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Search of human proteins with 71051598
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71051598 vacuolar protein sorting 36 [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71051598 vacuolar protein sorting 36 [Homo sapiens] 756 0.0
gi|58530840 desmoplakin isoform I [Homo sapiens] 35 0.11
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 34 0.19
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 34 0.19
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 33 0.43
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 33 0.43
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 33 0.43
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 33 0.43
gi|116089337 IQ motif containing GTPase activating protein 2 [Ho... 33 0.43
gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens] 33 0.57
gi|89111135 ATP-binding cassette protein C12 [Homo sapiens] 33 0.57
gi|21361380 EAP30 subunit of ELL complex [Homo sapiens] 32 0.74
gi|56699473 zinc finger protein 192 [Homo sapiens] 31 1.7
gi|53729363 leucine rich repeat and sterile alpha motif containi... 31 2.2
gi|53729361 leucine rich repeat and sterile alpha motif containi... 31 2.2
gi|53729359 leucine rich repeat and sterile alpha motif containi... 31 2.2
gi|5803145 ralA binding protein 1 [Homo sapiens] 30 3.7
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 4.8
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 30 4.8
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 30 4.8
gi|238859653 pleckstrin homology domain containing family A memb... 29 6.3
gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isofo... 29 6.3
gi|93277088 mediator of RNA polymerase II transcription, subunit... 29 6.3
gi|117414154 sodium channel associated protein 2 isoform b [Homo... 29 6.3
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 29 6.3
gi|31982906 cingulin-like 1 [Homo sapiens] 29 6.3
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 29 8.2
gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] 29 8.2
gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] 29 8.2
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 29 8.2
>gi|71051598 vacuolar protein sorting 36 [Homo sapiens]
Length = 386
Score = 756 bits (1953), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 60
MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA
Sbjct: 1 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 60
Query: 61 ILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYR 120
ILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYR
Sbjct: 61 ILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYR 120
Query: 121 RLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFED 180
RLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFED
Sbjct: 121 RLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFED 180
Query: 181 LSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQ 240
LSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQ
Sbjct: 181 LSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQ 240
Query: 241 YHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLP 300
YHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLP
Sbjct: 241 YHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLP 300
Query: 301 LRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLA 360
LRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLA
Sbjct: 301 LRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLA 360
Query: 361 EKMGHLCRDDSVEGLRFYPNLFMTQS 386
EKMGHLCRDDSVEGLRFYPNLFMTQS
Sbjct: 361 EKMGHLCRDDSVEGLRFYPNLFMTQS 386
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 35.0 bits (79), Expect = 0.11
Identities = 48/223 (21%), Positives = 95/223 (42%), Gaps = 19/223 (8%)
Query: 162 KLEEKRKETDKNISEAFEDLSKLMIKAKEMVELS---KSIANKIKDKQGDITEDETIRFK 218
+L+ + + K S A E ++KL ++ +E+ L + ++ + K DIT + +
Sbjct: 1506 RLQRVQYDLQKANSSATETINKLKVQEQELTRLRIDYERVSQERTVKDQDITRFQNSLKE 1565
Query: 219 SYLLSMGIANPVTR--ETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLT---EVYCLV 273
L + + R T + +L ++L G+ + E+ I +LT E +V
Sbjct: 1566 LQLQKQKVEEELNRLKRTASEDSCKRKKLEEELEGMRRSLKEQAIKITNLTQQLEQASIV 1625
Query: 274 NRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASA------ 327
+ +L D+++ + E + LR S V + Q +E+E V A
Sbjct: 1626 KKRSEDDLRQQRDVLDG-HLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLRNEH 1684
Query: 328 ----LETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHL 366
+E S + + E +L ++ L KE L+L E++ +L
Sbjct: 1685 FQKAIEDKSRSLNESKIEIERLQSLTENLTKEHLMLEEELRNL 1727
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 34.3 bits (77), Expect = 0.19
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 136 VSQSLQTNRGPQPGRIRAVGIVG-IERKLEEKRKETDKNISEAFEDLSKLMIKAKE 190
+ + L+ RG P A+ +VG I ++L+E++ E IS AFEDL + + + K+
Sbjct: 162 LQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQ 217
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 34.3 bits (77), Expect = 0.19
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 136 VSQSLQTNRGPQPGRIRAVGIVG-IERKLEEKRKETDKNISEAFEDLSKLMIKAKE 190
+ + L+ RG P A+ +VG I ++L+E++ E IS AFEDL + + + K+
Sbjct: 162 LQRQLEAVRGRLPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQ 217
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 33.1 bits (74), Expect = 0.43
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 162 KLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYL 221
KL ++RK ++ IS+ +L++ KAK + K+K+K + + +R K
Sbjct: 996 KLSKERKLLEERISDLTTNLAEEEEKAKNLT--------KLKNKHESMISELEVRLKKEE 1047
Query: 222 LSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLE 258
S + R+ G + +H Q+A A I ++ ++
Sbjct: 1048 KSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQ 1084
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSY 220
RKL+ + K+ + + +A ++ AKE + +KS+ + Q D+ E R ++
Sbjct: 1648 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1707
Query: 221 LLSMGIANPVTRETYGSGT--QYHMQLAKQLAGILQVPLEERGGIMSLTE 268
L +A + G +L ++A + + EE+G + ++++
Sbjct: 1708 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSD 1757
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 33.1 bits (74), Expect = 0.43
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 162 KLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYL 221
KL ++RK ++ IS+ +L++ KAK + K+K+K + + +R K
Sbjct: 1003 KLSKERKLLEERISDLTTNLAEEEEKAKNLT--------KLKNKHESMISELEVRLKKEE 1054
Query: 222 LSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLE 258
S + R+ G + +H Q+A A I ++ ++
Sbjct: 1055 KSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQ 1091
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSY 220
RKL+ + K+ + + +A ++ AKE + +KS+ + Q D+ E R ++
Sbjct: 1655 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1714
Query: 221 LLSMGIANPVTRETYGSGT--QYHMQLAKQLAGILQVPLEERGGIMSLTE 268
L +A + G +L ++A + + EE+G + ++++
Sbjct: 1715 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSD 1764
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 33.1 bits (74), Expect = 0.43
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 162 KLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYL 221
KL ++RK ++ IS+ +L++ KAK + K+K+K + + +R K
Sbjct: 1003 KLSKERKLLEERISDLTTNLAEEEEKAKNLT--------KLKNKHESMISELEVRLKKEE 1054
Query: 222 LSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLE 258
S + R+ G + +H Q+A A I ++ ++
Sbjct: 1055 KSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQ 1091
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSY 220
RKL+ + K+ + + +A ++ AKE + +KS+ + Q D+ E R ++
Sbjct: 1655 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1714
Query: 221 LLSMGIANPVTRETYGSGT--QYHMQLAKQLAGILQVPLEERGGIMSLTE 268
L +A + G +L ++A + + EE+G + ++++
Sbjct: 1715 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSD 1764
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 33.1 bits (74), Expect = 0.43
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 162 KLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYL 221
KL ++RK ++ IS+ +L++ KAK + K+K+K + + +R K
Sbjct: 996 KLSKERKLLEERISDLTTNLAEEEEKAKNLT--------KLKNKHESMISELEVRLKKEE 1047
Query: 222 LSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLE 258
S + R+ G + +H Q+A A I ++ ++
Sbjct: 1048 KSRQELEKLKRKLEGDASDFHEQIADLQAQIAELKMQ 1084
Score = 28.9 bits (63), Expect = 8.2
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSY 220
RKL+ + K+ + + +A ++ AKE + +KS+ + Q D+ E R ++
Sbjct: 1648 RKLQAQMKDFQRELEDARASRDEIFATAKENEKKAKSLEADLMQLQEDLAAAERARKQAD 1707
Query: 221 LLSMGIANPVTRETYGSGT--QYHMQLAKQLAGILQVPLEERGGIMSLTE 268
L +A + G +L ++A + + EE+G + ++++
Sbjct: 1708 LEKEELAEELASSLSGRNALQDEKRRLEARIAQLEEELEEEQGNMEAMSD 1757
>gi|116089337 IQ motif containing GTPase activating protein 2 [Homo
sapiens]
Length = 1575
Score = 33.1 bits (74), Expect = 0.43
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 159 IERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFK 218
+E +E R+ TDK ++ L L + ++K + N I +K D TEDE ++
Sbjct: 1044 LEASIENLRRVTDKVLNSIISSLDLLPYGLRY---IAKVLKNSIHEKFPDATEDELLKIV 1100
Query: 219 SYLLSMGIANP 229
LL NP
Sbjct: 1101 GNLLYYRYMNP 1111
>gi|7662244 DAZ interacting protein 3, zinc finger [Homo sapiens]
Length = 1208
Score = 32.7 bits (73), Expect = 0.57
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Query: 159 IERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSK----SIANKIKDKQGDITEDET 214
++ K +K+K +K ++ ED +++ +E + + S++ IKD D+ ED
Sbjct: 655 VKSKQRKKKKTKNKKNKDSKEDQVPYVVEKEEQLRKEQANPHSVSRLIKDDASDVQEDSA 714
Query: 215 IRFKSY---------LLSMGIANPVTRETYGSGTQYHMQLAKQL 249
+ K Y ++ G A VT + YG + + +QL
Sbjct: 715 MEDKFYSLDELHILDMIEQGSAGKVTTD-YGETEKERLARQRQL 757
>gi|89111135 ATP-binding cassette protein C12 [Homo sapiens]
Length = 1359
Score = 32.7 bits (73), Expect = 0.57
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 257 LEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQ 316
+EERG L ++ RG++ PE L NA M+EA K R D+G++V+
Sbjct: 689 MEERGRYAKL------IHNLRGLQFKDPEHLYNAA-MVEAFKESPAEREEDAGIIVLAPG 741
Query: 317 SHKEE 321
+ K+E
Sbjct: 742 NEKDE 746
>gi|21361380 EAP30 subunit of ELL complex [Homo sapiens]
Length = 258
Score = 32.3 bits (72), Expect = 0.74
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 152 RAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELS-KSIANKIKDKQGDIT 210
R VG I +K + K ++ A + L++ M K +M + + + A+K K +
Sbjct: 4 RGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQ-MSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 211 EDETIRFKSYLLSMGIANPVTR------ETYGSGTQYHMQLAKQLAGILQVPLEERGGIM 264
E ++F+ ++G+ +P+ E G G Y+ +L Q+ + GG++
Sbjct: 63 EFR-VQFQDMCATIGV-DPLASGKGFWSEMLGVGDFYY-ELGVQIIEVCLALKHRNGGLI 119
Query: 265 SLTEVYCLVNRARG--MELLSPEDLVNACKMLEAL 297
+L E++ V + RG + +S +DL+ A K L+AL
Sbjct: 120 TLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKAL 154
>gi|56699473 zinc finger protein 192 [Homo sapiens]
Length = 578
Score = 31.2 bits (69), Expect = 1.7
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 316 QSHKEEEMVASALETVSEKGSLTSEEFA------------KLVGMSVLLAKERLLLAEKM 363
Q +E M S T S+KGS +E K+ M+V L +E LL
Sbjct: 181 QESQERAMSTSQSPTRSQKGSSGDQEMTATLLTAGFQTLEKIEDMAVSLIREEWLLDPSQ 240
Query: 364 GHLCRDDSVEGLR 376
LCRD+ E R
Sbjct: 241 KDLCRDNRPENFR 253
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.8 bits (68), Expect = 2.2
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIAN-KIKDKQ-GDITEDET 214
++L+E+ K+T++NIS + L + + K+ E+ KS+ N +I+ +Q IT++ET
Sbjct: 322 QRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSITQEET 377
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.8 bits (68), Expect = 2.2
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIAN-KIKDKQ-GDITEDET 214
++L+E+ K+T++NIS + L + + K+ E+ KS+ N +I+ +Q IT++ET
Sbjct: 322 QRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSITQEET 377
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.8 bits (68), Expect = 2.2
Identities = 19/56 (33%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIAN-KIKDKQ-GDITEDET 214
++L+E+ K+T++NIS + L + + K+ E+ KS+ N +I+ +Q IT++ET
Sbjct: 322 QRLQEQLKQTEQNISSRIQKLLQDNQRQKKSSEILKSLENERIRMEQLMSITQEET 377
>gi|5803145 ralA binding protein 1 [Homo sapiens]
Length = 655
Score = 30.0 bits (66), Expect = 3.7
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 156 IVGIERKLEE-KRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDET 214
+ ++RKL E KR+E + I++ LSK + +EM E + I + + +TE E
Sbjct: 436 LTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEILTEQEE 495
Query: 215 IRFKSYLLSMGIAN 228
+ L IA+
Sbjct: 496 LLAMEQFLRRQIAS 509
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 29.6 bits (65), Expect = 4.8
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 172 KNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSY 220
+ + EDL++ ++K KE ++ SK+ N + D D+ + + K+Y
Sbjct: 1785 RELKTQVEDLNENLLKLKEALKTSKNRENSLTDNLNDLNNELQKKQKAY 1833
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 29.6 bits (65), Expect = 4.8
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 111 KEHGQIEFYRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKET 170
K+H + + +RL + + + E V S++ R + A +LEE RK++
Sbjct: 421 KKHLKDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEA--------QLEEVRKKS 472
Query: 171 DKNISEAFEDLSKLMIKAK----EMVELSKSI-ANKIKDKQGDITEDETIRFKSYLLSMG 225
+K I + E+ + L +K + E++ L + I NK + + + E R +L
Sbjct: 473 EKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQ 532
Query: 226 IANPVTRETYGSGTQYHMQLAKQ 248
ET G +Y +LA +
Sbjct: 533 DPCLKLDETSPRGEEYQDKLAAE 555
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 29.6 bits (65), Expect = 4.8
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 112 EHGQIEFYRRLSEEMTQRRWENMP---VSQSLQTNRGPQPGRIRAVGI 156
E ++++ RRLS ++ R W + S S Q RGP P + + +
Sbjct: 736 ERSEVDYGRRLSADIRLRSWTSSGSSCQSSSSQPERGPSPSLLNTISL 783
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 29.3 bits (64), Expect = 6.3
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 74 AGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIK---LSFKEHGQIEFYRRLSEEMTQRR 130
AG GK + H P + P +S+ + ++ L K GQ RRL EE+ Q++
Sbjct: 305 AGGGKPPRSPQHWSQEPRTQPGPPLESTFHQSLETDTLLTKLCGQDRLLRRLQEEIDQKQ 364
Query: 131 WENMPVSQSLQTNRGPQPGRIRAVGIVG 158
E + +L+ R R G G
Sbjct: 365 EEKEQLEAALELTRQQLGQATREAGAPG 392
>gi|90819229 cutaneous T-cell lymphoma-associated antigen 1 isoform
1 [Homo sapiens]
Length = 745
Score = 29.3 bits (64), Expect = 6.3
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 122 LSEEMTQRRWENMPVSQSLQT-NRGPQPGRIRAVGIVGIERKL----EEKRKETDKNISE 176
L E T EN + Q L+ Q ++ + +E K EEK + D+ IS
Sbjct: 334 LQSENTHFESENQKLQQKLKVMTELYQENEMKLYRKLIVEEKCRLEKEEKLSKVDEMISH 393
Query: 177 AFEDLSKLMIKAKEMVELSKSI 198
A E+L +AK++ E K+I
Sbjct: 394 ATEELETYRKRAKDLKEFEKTI 415
>gi|93277088 mediator of RNA polymerase II transcription, subunit 12
homolog (S. cerevisiae)-like [Homo sapiens]
Length = 2145
Score = 29.3 bits (64), Expect = 6.3
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 152 RAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITE 211
R + + G+ ++ +E R + K + + L+K K+ + K+KQ
Sbjct: 726 RTILLYGVGKERDEARHQLKKITKDILKILNK---KSTTETGVGDEGQKARKNKQETFPT 782
Query: 212 DETIRFKSYLLSMGIANPVTRE----------TYGSGTQYHMQLAKQL 249
ET+ K LLS + VT + ++ SGT YH+ LA +
Sbjct: 783 LETVFTKLQLLSYFDQHQVTSQISNNVLEQITSFASGTSYHLPLAHHI 830
>gi|117414154 sodium channel associated protein 2 isoform b [Homo
sapiens]
Length = 939
Score = 29.3 bits (64), Expect = 6.3
Identities = 42/230 (18%), Positives = 94/230 (40%), Gaps = 34/230 (14%)
Query: 12 EINETLVIQQRGVR-IYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIE 70
E L ++ R + + DG E + A L S H LIW +K +E +++ ++
Sbjct: 549 EFRIALTVEARRFQDVKDGFENV---ATELAKSKHALIWAQRKENE-SSSLIKDLTCMVK 604
Query: 71 EQAAGIGKSAKIVVHLHPAPPNKEPG---PFQSSKNSYIKLSFKEHGQIEFYRRLSEE-- 125
EQ + + +K+ N+ + K I++ +H +++ L+ +
Sbjct: 605 EQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKES 664
Query: 126 -----MTQRR-WENMPVSQ--SLQTNRGPQPGRIRAVG---------------IVGIERK 162
T+R+ W + Q SL NRG +I ++ + I+ K
Sbjct: 665 LIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCK 724
Query: 163 LEEKRKETDKNISEAFEDLSKLMIKAKEMV-ELSKSIANKIKDKQGDITE 211
+ + + ET + + + ++ + + + +E + E+ K ++ +K + E
Sbjct: 725 IIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDE 774
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 29.3 bits (64), Expect = 6.3
Identities = 42/230 (18%), Positives = 94/230 (40%), Gaps = 34/230 (14%)
Query: 12 EINETLVIQQRGVR-IYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMAILLSQIVFIE 70
E L ++ R + + DG E + A L S H LIW +K +E +++ ++
Sbjct: 642 EFRIALTVEARRFQDVKDGFENV---ATELAKSKHALIWAQRKENE-SSSLIKDLTCMVK 697
Query: 71 EQAAGIGKSAKIVVHLHPAPPNKEPG---PFQSSKNSYIKLSFKEHGQIEFYRRLSEE-- 125
EQ + + +K+ N+ + K I++ +H +++ L+ +
Sbjct: 698 EQKTKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKES 757
Query: 126 -----MTQRR-WENMPVSQ--SLQTNRGPQPGRIRAVG---------------IVGIERK 162
T+R+ W + Q SL NRG +I ++ + I+ K
Sbjct: 758 LIFGLRTERKVWGHELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCK 817
Query: 163 LEEKRKETDKNISEAFEDLSKLMIKAKEMV-ELSKSIANKIKDKQGDITE 211
+ + + ET + + + ++ + + + +E + E+ K ++ +K + E
Sbjct: 818 IIDDQTETIRKLKDCLQEKDEHIKRLQEKITEIEKCTQEQLDEKSSQLDE 867
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 29.3 bits (64), Expect = 6.3
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 111 KEHGQIEFYRRLSEEMTQRRWENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKET 170
+E Q E RRL EM RW + LQ R + ++ +L+E +++
Sbjct: 924 EESEQKEQLRRLKNEMENERWHLGKTIEKLQKEMADIVEASR-TSTLELQNQLDEYKEKN 982
Query: 171 DKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITED 212
+ ++E L + ++A E S+ A K++D+ + E+
Sbjct: 983 RRELAEMQRQLKEKTLEA----EKSRLTAMKMQDEMRLMEEE 1020
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 28.9 bits (63), Expect = 8.2
Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 29/208 (13%)
Query: 161 RKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSY 220
R EEK K+ + + E+L K + + + K++ +KD Q + E E + K
Sbjct: 1753 RNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALK-- 1810
Query: 221 LLSMGIANPVTRETYGSGTQYHMQLAKQLAGI-LQVPLEERGGIMSLTEVYCLVNRARGM 279
G + +L ++ + ++ +E++ G +L + + + M
Sbjct: 1811 ----------------GGKKQIQKLENRVRELENELDVEQKRGAEALKGAHKYERKVKEM 1854
Query: 280 ELLSPEDLVNACKMLEAL-KLPLRLRVFDSGVMVIELQSHKEE---EMVASALETVSEKG 335
+ ED N ++ + + KL +++ + E Q++ + V LE +E+
Sbjct: 1855 TYQAEEDHKNILRLQDLVDKLQAKVKSYKRQAEEAEEQANTQLSRCRRVQHELEEAAERA 1914
Query: 336 SLTSEEFAKLVGMSVLLAKERLLLAEKM 363
+ + K L AK R + ++KM
Sbjct: 1915 DIAESQVNK------LRAKSRDVGSQKM 1936
>gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]
Length = 2540
Score = 28.9 bits (63), Expect = 8.2
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 158 GIERKLEEKRKETDKNISEAFEDLSKLM-----IKAKEMVELSKSIANKIKDKQG--DIT 210
GI +K EE+ + D + + +D S++ I A + V+ + KI +QG +
Sbjct: 2362 GILKKFEEE--DLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLP 2419
Query: 211 EDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVY 270
E + IR +S+ ++ + + E YG T L + L + +P G + + +
Sbjct: 2420 EHDPIRDQSWYVNKKLRQRLLEE-YGVRT---CTLIQFLGDAIVLPA---GALHQVQNFH 2472
Query: 271 CLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMV 324
+ + +SPE LV + + + L+L +D + V + H +EMV
Sbjct: 2473 SCIQVTE--DFVSPEHLVESFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMV 2524
>gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]
Length = 2303
Score = 28.9 bits (63), Expect = 8.2
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 158 GIERKLEEKRKETDKNISEAFEDLSKLM-----IKAKEMVELSKSIANKIKDKQG--DIT 210
GI +K EE+ + D + + +D S++ I A + V+ + KI +QG +
Sbjct: 2125 GILKKFEEE--DLDDILRKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLP 2182
Query: 211 EDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVY 270
E + IR +S+ ++ + + E YG T L + L + +P G + + +
Sbjct: 2183 EHDPIRDQSWYVNKKLRQRLLEE-YGVRT---CTLIQFLGDAIVLPA---GALHQVQNFH 2235
Query: 271 CLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMV 324
+ + +SPE LV + + + L+L +D + V + H +EMV
Sbjct: 2236 SCIQVTE--DFVSPEHLVESFHLTQELRLLKEEINYDDKLQVKNILYHAVKEMV 2287
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 28.9 bits (63), Expect = 8.2
Identities = 23/105 (21%), Positives = 55/105 (52%), Gaps = 15/105 (14%)
Query: 99 QSSKNSYIKLSFKEHGQI-EFYRRLSEEMTQRRWENMPVSQSLQTN----RGPQPGRIRA 153
++SK ++L K+ ++ EF+ +L + Q++ E + ++++ P+ ++
Sbjct: 168 ETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNT 227
Query: 154 VGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSI 198
+ L+E+R NI+EAF+D+S+ ++ ++M E + I
Sbjct: 228 I--------LQEQRMAF--NIAEAFKDVSEPIVFLQQMQEFREKI 262
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,388,911
Number of Sequences: 37866
Number of extensions: 551250
Number of successful extensions: 2335
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 2310
Number of HSP's gapped (non-prelim): 51
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.