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Search of human proteins with 71043932
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71043932 zinc finger, SWIM domain containing 2 [Homo
sapiens]
(633 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens] 1324 0.0
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 77 5e-14
gi|150378447 zinc and ring finger 3 [Homo sapiens] 54 3e-07
gi|56711322 ring finger protein 43 [Homo sapiens] 52 1e-06
gi|37622894 ring finger protein 126 [Homo sapiens] 51 3e-06
gi|29788758 ring finger protein 130 [Homo sapiens] 51 4e-06
gi|5174653 ring finger protein 6 [Homo sapiens] 50 5e-06
gi|34305295 ring finger protein 6 [Homo sapiens] 50 5e-06
gi|34305293 ring finger protein 6 [Homo sapiens] 50 5e-06
gi|14149702 ring finger protein 167 [Homo sapiens] 50 6e-06
gi|34577087 ring finger protein 13 [Homo sapiens] 50 8e-06
gi|6005864 ring finger protein 13 [Homo sapiens] 50 8e-06
gi|7662486 ring finger protein 44 [Homo sapiens] 49 1e-05
gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens] 48 2e-05
gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens] 48 2e-05
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 48 2e-05
gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens] 48 2e-05
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 48 2e-05
gi|37595553 ring finger protein 111 [Homo sapiens] 48 2e-05
gi|38045931 ring finger protein 122 [Homo sapiens] 48 3e-05
gi|126032348 hect domain and RLD 2 [Homo sapiens] 47 4e-05
gi|7657520 ring finger protein 11 [Homo sapiens] 47 4e-05
gi|57165361 ring finger protein 165 [Homo sapiens] 47 5e-05
gi|63025220 ring finger protein 215 [Homo sapiens] 46 9e-05
gi|29789407 ring finger protein 149 [Homo sapiens] 46 1e-04
gi|58331204 ring finger protein 150 [Homo sapiens] 46 1e-04
gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo ... 45 2e-04
gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo ... 45 2e-04
gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens] 45 2e-04
gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens] 45 2e-04
>gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens]
Length = 633
Score = 1324 bits (3427), Expect = 0.0
Identities = 633/633 (100%), Positives = 633/633 (100%)
Query: 1 MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGN 60
MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGN
Sbjct: 1 MLRRGYKASERRRHLSERLSWHQDQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGN 60
Query: 61 PHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQ 120
PHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQ
Sbjct: 61 PHVCNCSTFPKGGELCKHICWVLLKKFKLPRNHESALQLGLGEREISDLLRGIHRVQTPQ 120
Query: 121 PGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKIL 180
PGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKIL
Sbjct: 121 PGTNDENEHVEEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKIL 180
Query: 181 ANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQF 240
ANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQF
Sbjct: 181 ANYQSTSNTSMLKCPLCRKEFAPLKLILEEFKNSSKLVAAAEKERLDKHLGIPCNNCKQF 240
Query: 241 PIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSLEKRADEVVKYIDTKN 300
PIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSLEKRADEVVKYIDTKN
Sbjct: 241 PIEGKCYKCTECIEYHLCQECFDSCCHLSHTFTFREKRNQKWRSLEKRADEVVKYIDTKN 300
Query: 301 EIEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLL 360
EIEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLL
Sbjct: 301 EIEEKMSHFQEKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLL 360
Query: 361 PCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVSNRDIIHLSKQK 420
PCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVSNRDIIHLSKQK
Sbjct: 361 PCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVSNRDIIHLSKQK 420
Query: 421 EPDLFIPGTGLVLKQNRLGILPSIPQCNFDELNTPQSPKDAYENTTIDNLCSIKLDNSNS 480
EPDLFIPGTGLVLKQNRLGILPSIPQCNFDELNTPQSPKDAYENTTIDNLCSIKLDNSNS
Sbjct: 421 EPDLFIPGTGLVLKQNRLGILPSIPQCNFDELNTPQSPKDAYENTTIDNLCSIKLDNSNS 480
Query: 481 KKLTYDYKISQHFPRYLQDLPTVSFGKIPSQTLLPPIVHKNIVCPTAMESPCISGKFHTS 540
KKLTYDYKISQHFPRYLQDLPTVSFGKIPSQTLLPPIVHKNIVCPTAMESPCISGKFHTS
Sbjct: 481 KKLTYDYKISQHFPRYLQDLPTVSFGKIPSQTLLPPIVHKNIVCPTAMESPCISGKFHTS 540
Query: 541 LSRMTKGCKCNNHNLKKTPATKIREDNKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGE 600
LSRMTKGCKCNNHNLKKTPATKIREDNKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGE
Sbjct: 541 LSRMTKGCKCNNHNLKKTPATKIREDNKRSTLLPEDFNLIVNWSTAKLSLSKRYSNCMGE 600
Query: 601 ITRKCSHLSRQPVSHSVNTKSTELSLIIEGVQL 633
ITRKCSHLSRQPVSHSVNTKSTELSLIIEGVQL
Sbjct: 601 ITRKCSHLSRQPVSHSVNTKSTELSLIIEGVQL 633
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 77.0 bits (188), Expect = 5e-14
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 31/198 (15%)
Query: 24 DQALSSSIYLLREMGPTGFLLREEEPEYMDFRVFLGNPHVCNCSTFPKGGELCKHICWVL 83
++ + + +YLL+++GP FL+ + P+ +RVF+G P C+C+ G C H+ +V+
Sbjct: 309 NKVMRARLYLLQQIGPNSFLIGGDSPD-NKYRVFIG-PQNCSCAR----GTFCIHLLFVM 362
Query: 84 LKKFKLPRNHESALQLGLGEREISDLLRGIH-----RVQTPQPGTNDE------NEHV-- 130
L+ F+L + + L E+ L + H R++ P T + N H
Sbjct: 363 LRVFQLEPSDPMLWRKTLKNFEVESLFQKYHSRRSSRIKAPSRNTIQKFVSRMSNSHTLS 422
Query: 131 -------EEDGYIKQKEIDSEDICSICQELLLEKKLPVTFCRFGCGNSIHIKCMKILANY 183
+ IK +E E +C IC +L+++ +T C GC N +H CM I A
Sbjct: 423 SSSTSTSSSENSIKDEE---EQMCPICLLGMLDEE-SLTVCEDGCRNKLHHHCMSIWAE- 477
Query: 184 QSTSNTSMLKCPLCRKEF 201
+ N L CPLCR ++
Sbjct: 478 ECRRNREPLICPLCRSKW 495
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 54.3 bits (129), Expect = 3e-07
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLF--HKCNSC 382
C +CL+ + G+ R++PCTH+FHRKC+D WL H C C
Sbjct: 193 CAICLEKYIDGEELRVIPCTHRFHRKCVDPWLLQHHTCPHC 233
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQ 403
C +CL+ F GQ R++ C H+FHR C+D WL H+ +CP+ I ++ S +
Sbjct: 272 CAICLEEFSEGQELRVISCLHEFHRNCVDPWL-HQHRTCPLCMFNITEGDSFSQSLGPSR 330
Query: 404 AHQSVSNRDIIHLSKQ 419
++Q R +HL +Q
Sbjct: 331 SYQEPGRR--LHLIRQ 344
>gi|37622894 ring finger protein 126 [Homo sapiens]
Length = 311
Score = 51.2 bits (121), Expect = 3e-06
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 311 EKQGQVYTPKHIVRSLPLQLITKNSKLLAPGYQCLLCLKAFHLGQHTRLLPCTHKFHRKC 370
E G K +++LP +T+ + G +C +C + LG+ R LPC H FH C
Sbjct: 198 ENTGPPPADKEKIQALPTVPVTEEH--VGSGLECPVCKDDYALGERVRQLPCNHLFHDGC 255
Query: 371 IDNWLFHKCNSCPIDGQVIYNPLTWKNSAVNGQAHQSVS 409
I WL + +SCP V LT +N+A N VS
Sbjct: 256 IVPWL-EQHDSCP----VCRKSLTGQNTATNPPGLTGVS 289
>gi|29788758 ring finger protein 130 [Homo sapiens]
Length = 419
Score = 50.8 bits (120), Expect = 4e-06
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 320 KHIVRSLPLQLITKNSKLLAPGYQ-CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK 378
K + L + + K K P + C +C++++ R+LPC H FH+ C+D WL
Sbjct: 239 KKAISKLTTRTVKKGDKETDPDFDHCAVCIESYKQNDVVRILPCKHVFHKSCVDPWLSEH 298
Query: 379 CNSCPI 384
C +CP+
Sbjct: 299 C-TCPM 303
>gi|5174653 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 341 GYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAV 400
G C +C+ + G R LPC H+FH CID WL C +CPI Q P+ N A
Sbjct: 629 GKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENC-TCPICRQ----PVLGSNIAN 683
Query: 401 NG 402
NG
Sbjct: 684 NG 685
>gi|34305295 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 341 GYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAV 400
G C +C+ + G R LPC H+FH CID WL C +CPI Q P+ N A
Sbjct: 629 GKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENC-TCPICRQ----PVLGSNIAN 683
Query: 401 NG 402
NG
Sbjct: 684 NG 685
>gi|34305293 ring finger protein 6 [Homo sapiens]
Length = 685
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 341 GYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNPLTWKNSAV 400
G C +C+ + G R LPC H+FH CID WL C +CPI Q P+ N A
Sbjct: 629 GKICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENC-TCPICRQ----PVLGSNIAN 683
Query: 401 NG 402
NG
Sbjct: 684 NG 685
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 50.1 bits (118), Expect = 6e-06
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIY 390
C +CL + G R+LPC H +H +C+D WL +CPI Q ++
Sbjct: 230 CAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVH 276
>gi|34577087 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 49.7 bits (117), Expect = 8e-06
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVI 389
C +CL + G R+LPC+H +H KC+D WL +CP+ Q +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>gi|6005864 ring finger protein 13 [Homo sapiens]
Length = 381
Score = 49.7 bits (117), Expect = 8e-06
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVI 389
C +CL + G R+LPC+H +H KC+D WL +CP+ Q +
Sbjct: 240 CAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKV 285
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 48.9 bits (115), Expect = 1e-05
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCN-SCPI 384
C++C F Q R+LPC H+FH KC+D WL K N +CPI
Sbjct: 380 CVVCFSDFEARQLLRVLPCNHEFHTKCVDKWL--KANRTCPI 419
>gi|37577185 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCN-SCPI 384
C++C+ F Q R+LPC H+FH KC+D WL K N +CPI
Sbjct: 380 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPI 419
>gi|37577181 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCN-SCPI 384
C++C+ F Q R+LPC H+FH KC+D WL K N +CPI
Sbjct: 380 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPI 419
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCN-SCPI 384
C++C+ F Q R+LPC H+FH KC+D WL K N +CPI
Sbjct: 413 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPI 452
>gi|37577177 ring finger protein 38 isoform 2 [Homo sapiens]
Length = 432
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCN-SCPI 384
C++C+ F Q R+LPC H+FH KC+D WL K N +CPI
Sbjct: 380 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPI 419
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 48.1 bits (113), Expect = 2e-05
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 344 CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCN-SCPI 384
C++C+ F Q R+LPC H+FH KC+D WL K N +CPI
Sbjct: 463 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL--KANRTCPI 502
>gi|37595553 ring finger protein 111 [Homo sapiens]
Length = 986
Score = 48.1 bits (113), Expect = 2e-05
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 343 QCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLF--HKCNSCPID 385
+C +CL G+ R LPC H FH+ C+D WL KC C +D
Sbjct: 933 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVD 977
>gi|38045931 ring finger protein 122 [Homo sapiens]
Length = 155
Score = 47.8 bits (112), Expect = 3e-05
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 336 KLLAPGYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPIDGQVIYNP 392
KL G C +CL+ F +LPC H FHRKC+ WL +C CP+ + I +P
Sbjct: 85 KLQLYGQTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRC-VCPMCNKPIASP 140
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 47.4 bits (111), Expect = 4e-05
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 229 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSCCH-LSHTF 272
H G+ C+ C+ FPI G +KC C ++ C+ CF + H HTF
Sbjct: 2703 HPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCFKTKKHNTRHTF 2747
>gi|7657520 ring finger protein 11 [Homo sapiens]
Length = 154
Score = 47.4 bits (111), Expect = 4e-05
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 343 QCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK--CNSC--PIDGQVI 389
+C++C+ F G R LPC H +H CID+WL C SC P+D ++
Sbjct: 98 ECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCMEPVDAALL 148
>gi|57165361 ring finger protein 165 [Homo sapiens]
Length = 346
Score = 47.0 bits (110), Expect = 5e-05
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 343 QCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWL--FHKCNSCPID 385
+C +CL G+ R LPC H FH+ C+D WL KC C +D
Sbjct: 293 KCTICLSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVD 337
>gi|63025220 ring finger protein 215 [Homo sapiens]
Length = 377
Score = 46.2 bits (108), Expect = 9e-05
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 340 PGYQ-CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHKCNSCPI 384
PG + C +CL F Q R+LPC H+FHR C+D WL + +CP+
Sbjct: 320 PGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQ-QTCPL 364
>gi|29789407 ring finger protein 149 [Homo sapiens]
Length = 400
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 320 KHIVRSLPLQLITKNSKLL-APGYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLF-- 376
K ++ L L + K + C +C++ F + R+LPC H FHR CID WL
Sbjct: 244 KKVIGQLLLHTVKHGEKGIDVDAENCAVCIENFKVKDIIRILPCKHIFHRICIDPWLLDH 303
Query: 377 HKCNSCPID 385
C C +D
Sbjct: 304 RTCPMCKLD 312
>gi|58331204 ring finger protein 150 [Homo sapiens]
Length = 438
Score = 45.8 bits (107), Expect = 1e-04
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 320 KHIVRSLPLQLITKNSKLLAPGYQ-CLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK 378
K + L ++ I K K + C +C++ + R+LPC H FH+ C+D WL
Sbjct: 253 KKAISKLQIRTIKKGDKETESDFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDH 312
Query: 379 CNSCPI 384
+CP+
Sbjct: 313 -RTCPM 317
>gi|239749332 PREDICTED: hypothetical protein XP_002347002 [Homo
sapiens]
Length = 183
Score = 45.4 bits (106), Expect = 2e-04
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 343 QCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK--CNSC--PID 385
+C++CL F G R LPC H FH CID WL C C P+D
Sbjct: 87 ECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVD 133
>gi|239743424 PREDICTED: hypothetical protein XP_002342853 [Homo
sapiens]
Length = 183
Score = 45.4 bits (106), Expect = 2e-04
Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 343 QCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK--CNSC--PID 385
+C++CL F G R LPC H FH CID WL C C P+D
Sbjct: 87 ECVICLLEFVCGDPIRCLPCKHFFHLDCIDTWLLRSFTCPYCRGPVD 133
>gi|37588873 ring finger protein 128 isoform 1 [Homo sapiens]
Length = 428
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 320 KHIVRSLPLQLITKNSKLLAP-GYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK 378
K + L L+ + + K + P G C +C++ + R+L C H FH+ C+D WL
Sbjct: 252 KKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEH 311
Query: 379 CNSCPI 384
+CP+
Sbjct: 312 -RTCPM 316
>gi|37588871 ring finger protein 128 isoform 2 [Homo sapiens]
Length = 402
Score = 45.1 bits (105), Expect = 2e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 320 KHIVRSLPLQLITKNSKLLAP-GYQCLLCLKAFHLGQHTRLLPCTHKFHRKCIDNWLFHK 378
K + L L+ + + K + P G C +C++ + R+L C H FH+ C+D WL
Sbjct: 226 KKAIGRLQLRTLKQGDKEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEH 285
Query: 379 CNSCPI 384
+CP+
Sbjct: 286 -RTCPM 290
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,977,881
Number of Sequences: 37866
Number of extensions: 1336554
Number of successful extensions: 4368
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 4146
Number of HSP's gapped (non-prelim): 320
length of query: 633
length of database: 18,247,518
effective HSP length: 108
effective length of query: 525
effective length of database: 14,157,990
effective search space: 7432944750
effective search space used: 7432944750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.