BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|7019507 purine-rich element binding protein G isoform A [Homo sapiens] (347 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|7019507 purine-rich element binding protein G isoform A [Homo... 711 0.0 gi|62865862 purine-rich element binding protein G isoform B [Hom... 588 e-168 gi|5032007 purine-rich element binding protein A [Homo sapiens] 301 6e-82 gi|15147219 purine-rich element binding protein B [Homo sapiens] 286 1e-77 gi|23510368 homeobox D11 [Homo sapiens] 35 0.13 gi|38198663 potassium channel tetramerisation domain containing ... 33 0.38 gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 33 0.38 gi|4758392 forkhead box D1 [Homo sapiens] 33 0.49 gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 33 0.49 gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 32 0.64 gi|46430491 scratch 2 protein [Homo sapiens] 32 0.64 gi|4758168 distal-less homeobox 2 [Homo sapiens] 32 0.84 gi|154448890 THO complex 1 [Homo sapiens] 32 0.84 gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1 gi|51479145 brefeldin A-inhibited guanine nucleotide-exchange pr... 32 1.1 gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 32 1.1 gi|122937424 one cut homeobox 3 [Homo sapiens] 32 1.1 gi|44917619 kelch domain containing 10 [Homo sapiens] 31 1.4 gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] 31 1.9 gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] 31 1.9 gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 31 1.9 gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 31 1.9 gi|4503765 fragile X mental retardation 1 [Homo sapiens] 30 2.4 gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens] 30 2.4 gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] 30 2.4 gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] 30 2.4 gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.4 gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.4 gi|33620755 YEATS domain containing 2 [Homo sapiens] 30 2.4 gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens] 30 3.2 >gi|7019507 purine-rich element binding protein G isoform A [Homo sapiens] Length = 347 Score = 711 bits (1834), Expect = 0.0 Identities = 347/347 (100%), Positives = 347/347 (100%) Query: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL Sbjct: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60 Query: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG Sbjct: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120 Query: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN Sbjct: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180 Query: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI Sbjct: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240 Query: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTI 300 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTI Sbjct: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTI 300 Query: 301 TVPFKAWTRFGENFIKYEEEMRKICNSHKEKRMDGRKASGEEQECLD 347 TVPFKAWTRFGENFIKYEEEMRKICNSHKEKRMDGRKASGEEQECLD Sbjct: 301 TVPFKAWTRFGENFIKYEEEMRKICNSHKEKRMDGRKASGEEQECLD 347 >gi|62865862 purine-rich element binding protein G isoform B [Homo sapiens] Length = 322 Score = 588 bits (1516), Expect = e-168 Identities = 291/302 (96%), Positives = 294/302 (97%), Gaps = 1/302 (0%) Query: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL Sbjct: 1 MERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQEL 60 Query: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG Sbjct: 61 ASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLG 120 Query: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN Sbjct: 121 DFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDN 180 Query: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI Sbjct: 181 RKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLI 240 Query: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTI 300 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLK++ P R I Sbjct: 241 EDYGEGDIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKLTNY-PKSRENI 299 Query: 301 TV 302 + Sbjct: 300 NL 301 >gi|5032007 purine-rich element binding protein A [Homo sapiens] Length = 322 Score = 301 bits (771), Expect = 6e-82 Identities = 172/338 (50%), Positives = 211/338 (62%), Gaps = 69/338 (20%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDI 67 GGGGG G GG + GG G + L QH E QELASKRVDI Sbjct: 32 GGGGGGGGGGGSGGGGGGAPGGL----QH-------------------ETQELASKRVDI 68 Query: 68 QKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDFIEHYA 127 Q KRFYLDVKQ+++GRFLKIAEV G KS+LTLS+SVA E +D LGDFIEHYA Sbjct: 69 QNKRFYLDVKQNAKGRFLKIAEVGAGGN------KSRLTLSMSVAVEFRDYLGDFIEHYA 122 Query: 128 HLGLKGHRQEHGHSKEQGSRRRQKHSAPS-PPVSVGSEEHPHSVLKTDYIERDNRKYYLD 186 LG PS PP +++ P LK++++ R+NRKYY+D Sbjct: 123 QLG------------------------PSQPPDLAQAQDEPRRALKSEFLVRENRKYYMD 158 Query: 187 LKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQEQTIVLPAQGMIEFRDALVQLIEDYGEG 246 LKENQRGRFLRIRQT+ RG G+ Q QTI LPAQG+IEFRDAL +LI+DYG Sbjct: 159 LKENQRGRFLRIRQTVNRGPGL------GSTQGQTIALPAQGLIEFRDALAKLIDDYGV- 211 Query: 247 DIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNTITVPFKA 306 +++P ELPEGTS VDNKRF+FDVGSNKYG+F++VSEV+P YRN+ITVP+K Sbjct: 212 --------EEEPAELPEGTSLTVDNKRFFFDVGSNKYGVFMRVSEVKPTYRNSITVPYKV 263 Query: 307 WTRFGENFIKYEEEMRKICNSHKEKRMDGRKASGEEQE 344 W +FG F KY EEM+KI +EKR + ++Q+ Sbjct: 264 WAKFGHTFCKYSEEMKKIQEKQREKRAACEQLHQQQQQ 301 >gi|15147219 purine-rich element binding protein B [Homo sapiens] Length = 312 Score = 286 bits (733), Expect = 1e-77 Identities = 165/310 (53%), Positives = 201/310 (64%), Gaps = 41/310 (13%) Query: 49 NQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRGRFLKIAEVWIGRGRQDNIRKSKLTLS 108 ++ GG E QELASKR+DIQ KRFYLDVKQ+++GRFLKIAEV G KS+LTLS Sbjct: 23 SRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEVGAGGS------KSRLTLS 76 Query: 109 LSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVSVGSEEHPH 168 ++VAAE +D LGDFIEHYA LG Q ++E G RR Sbjct: 77 MAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR------------------- 117 Query: 169 SVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLGQE--QTIVLPA 226 LK++++ R+NRKYYLDLKENQRGRFLRIRQT+ RG G G G + QTI LPA Sbjct: 118 -ALKSEFLVRENRKYYLDLKENQRGRFLRIRQTVNRGGGGFGAGPGPGGLQSGQTIALPA 176 Query: 227 QGMIEFRDALVQLIEDYGEGDIEERRGGDDDPL---------ELPEGTSFRVDNKRFYFD 277 QG+IEFRDAL +LI+DYG G+ +E GG ELPEGTS VD+KRF+FD Sbjct: 177 QGLIEFRDALAKLIDDYG-GEDDELAGGPGGGAGGPGGGLYGELPEGTSITVDSKRFFFD 235 Query: 278 VGSNKYGIFLKVSEVRPPYRNTITVPFKAWTRFGENFIKYEEEMRKICNSHKEK---RMD 334 VG NKYG+FL+VSEV+P YRN ITVPFKAW +FG F +Y +EM++I ++K R Sbjct: 236 VGCNKYGVFLRVSEVKPSYRNAITVPFKAWGKFGGAFCRYADEMKEIQERQRDKLYERRG 295 Query: 335 GRKASGEEQE 344 G GEE E Sbjct: 296 GGSGGGEESE 305 Score = 57.8 bits (138), Expect = 1e-08 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 18/140 (12%) Query: 158 PVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTMMRGTGMIGYFGHSLG 217 P S G E L + ++ N+++YLD+K+N +GRFL+I + G G G Sbjct: 21 PASRGGGEQETQELASKRLDIQNKRFYLDVKQNAKGRFLKIAEV---GAG---------G 68 Query: 218 QEQTIVLPAQGMIEFRDALVQLIEDY---GEGDIEERRGGDDD---PLELPEGTSFRVDN 271 + + L EFRD+L IE Y G E+ G ++ P + +N Sbjct: 69 SKSRLTLSMAVAAEFRDSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRRALKSEFLVREN 128 Query: 272 KRFYFDVGSNKYGIFLKVSE 291 +++Y D+ N+ G FL++ + Sbjct: 129 RKYYLDLKENQRGRFLRIRQ 148 >gi|23510368 homeobox D11 [Homo sapiens] Length = 338 Score = 34.7 bits (78), Expect = 0.13 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 8/59 (13%) Query: 1 MERAR---RRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAE 56 +ERA+ R GGGGG GG + GG G + P+YAA+A A AAE Sbjct: 68 LERAKWPYRGGGGGGSAGGGSSGGGPGGGGG-----GAGGYAPYYAAAAAAAAAAAAAE 121 >gi|38198663 potassium channel tetramerisation domain containing 8 [Homo sapiens] Length = 473 Score = 33.1 bits (74), Expect = 0.38 Identities = 26/100 (26%), Positives = 40/100 (40%) Query: 23 SGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDIQKKRFYLDVKQSSRG 82 SG S + L + SH P+ A A Q KK + + Sbjct: 348 SGTSCNELSTSSCDSHSEASTPQDNPSSAQQATAHQPNTLTLDRPSKKAPVQWIPPPDKR 407 Query: 83 RFLKIAEVWIGRGRQDNIRKSKLTLSLSVAAELKDCLGDF 122 R ++ + I + R+ N+ K K+ LSV E+K C+ DF Sbjct: 408 RNSELFQTLISKSRETNLSKKKVCEKLSVEEEMKKCIQDF 447 >gi|110347449 POU domain, class 4, transcription factor 1 [Homo sapiens] Length = 419 Score = 33.1 bits (74), Expect = 0.38 Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHS--HYPHYAASATPNQAGG 53 GGGGG G GG GG L S HS H H AA+A N G Sbjct: 166 GGGGGPGGGGGGPGGGLLGGSAHPHPHMHSLGHLSHPAAAAAMNMPSG 213 >gi|4758392 forkhead box D1 [Homo sapiens] Length = 465 Score = 32.7 bits (73), Expect = 0.49 Identities = 20/65 (30%), Positives = 28/65 (43%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRVDI 67 GGGGG G GG GSG + P + A +P + +EI E S R Sbjct: 102 GGGGGGGAGGGGSAGSGAKNPLVKPPYSYIALITMAILQSPKKRLTLSEICEFISGRFPY 161 Query: 68 QKKRF 72 +++F Sbjct: 162 YREKF 166 >gi|5453936 POU class 3 homeobox 3 [Homo sapiens] Length = 500 Score = 32.7 bits (73), Expect = 0.49 Identities = 15/41 (36%), Positives = 22/41 (53%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATP 48 GGGGG G G +++ GL + A+H H+ H+ A P Sbjct: 242 GGGGGAGGGAQSLVHPGLVRGDTPELAEHHHHHHHHAHPHP 282 >gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming sequence [Homo sapiens] Length = 906 Score = 32.3 bits (72), Expect = 0.64 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 3/37 (8%) Query: 8 GGGGGRGRGGKNVGG-SGLSKSRLYPQAQHSHY--PH 41 G GGG G GG GG GL K P H H+ PH Sbjct: 10 GAGGGSGSGGSGSGGLIGLMKDAFQPHHHHHHHLSPH 46 >gi|46430491 scratch 2 protein [Homo sapiens] Length = 307 Score = 32.3 bits (72), Expect = 0.64 Identities = 16/34 (47%), Positives = 18/34 (52%) Query: 5 RRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSH 38 RRRGGGGG G + GG+G R QA H Sbjct: 120 RRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153 >gi|4758168 distal-less homeobox 2 [Homo sapiens] Length = 328 Score = 32.0 bits (71), Expect = 0.84 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%) Query: 5 RRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELA 61 +R GGGG G GG G SG S S A +YP Y + +G A+ +Q A Sbjct: 247 QRMAGGGGPGSGGSGAGSSGSSPSSA-ASAFLGNYPWYHQT-----SGSASHLQATA 297 >gi|154448890 THO complex 1 [Homo sapiens] Length = 657 Score = 32.0 bits (71), Expect = 0.84 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 28/110 (25%) Query: 241 EDYGEG-DIEERRGGDDDPLELPEGTSFRVDNKRFYFDVGSNKYGIFLKVSEVRPPYRNT 299 ED EG D+EE GD+ E P S +D Y ++ K ++ +RN Sbjct: 204 EDREEGMDVEEGEMGDE---EAPTTCSIPID------------YNLYRKFWSLQDYFRNP 248 Query: 300 ITVPFK-AWTRFGENFIKYEEEMRKICNSHK-------EKRMDGRKASGE 341 + K +W + F+KY EE+ + S+K K+M+ K GE Sbjct: 249 VQCYEKISW----KTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGE 294 >gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] Length = 819 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Query: 5 RRRGGGGG--RGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGA 54 + RGGGG RG GG GSG +KSR +A S H A + GGA Sbjct: 722 KSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASK-SHGGGGAKRRRGGGA 772 >gi|51479145 brefeldin A-inhibited guanine nucleotide-exchange protein 1 [Homo sapiens] Length = 1849 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 143 EQGSRRRQKHSAPSPPVSVGSEEHPHSVLKTDYIERDNRKYYLDLKENQRGRFLRIRQTM 202 E+ +K S P GS P KT++IE D KY+L + + + RI T Sbjct: 42 EEIKAETEKQSPPHGEAKAGSSTLPPVKSKTNFIEAD--KYFLPFELACQSKCPRIVSTS 99 Query: 203 MRGTGMIGYFGHSLGQEQTIVLPAQGMIE 231 + + +GH G P + +I+ Sbjct: 100 LDCLQKLIAYGHLTGNAPDSTTPGKKLID 128 >gi|45439359 triple functional domain (PTPRF interacting) [Homo sapiens] Length = 3097 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 15/59 (25%) Query: 8 GGGGGRGRGGKNVGGSG-------------LSKSR--LYPQAQHSHYPHYAASATPNQA 51 GGGGG G GG GGSG S+SR PQ H P +SA +QA Sbjct: 2303 GGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPVRHHPPVLVSSAASSQA 2361 Score = 28.9 bits (63), Expect = 7.1 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 8/58 (13%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATPNQAGGAAEIQELASKRV 65 GGGGG G GG GG G S P H S P+ GGA R+ Sbjct: 2292 GGGGGGGSGGS--GGGGGSGGGGAPSGGSGH------SGGPSSCGGAPSTSRSRPSRI 2341 >gi|122937424 one cut homeobox 3 [Homo sapiens] Length = 494 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYP----QAQHSHYPHYAASATPNQAGG---AAEIQEL 60 GGGGG G GG GSG + L P A +H PH GG A +E+ Sbjct: 265 GGGGGTGSGG---AGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGGGPSAGAAAEEI 321 Query: 61 ASKRV 65 +K V Sbjct: 322 NTKEV 326 >gi|44917619 kelch domain containing 10 [Homo sapiens] Length = 442 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Query: 2 ERARRRGGG------GGRGRGGKNVGGSGLSKSRLYPQAQHSHYPH 41 +R RRRGGG GG G GG + G G +L Q S PH Sbjct: 8 DRNRRRGGGAAGAGGGGSGAGGGSGGSGGRGTGQLNRFVQLSGRPH 53 >gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens] Length = 498 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 101 RKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVS 160 RK++ T+S+ V +K L + + GLK + SKE + R SA SPP Sbjct: 318 RKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSS-SASSPPKK 376 Query: 161 VGSEEHPHS 169 H HS Sbjct: 377 EHHHHHHHS 385 >gi|4826830 methyl CpG binding protein 2 isoform 1 [Homo sapiens] Length = 486 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 101 RKSKLTLSLSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQGSRRRQKHSAPSPPVS 160 RK++ T+S+ V +K L + + GLK + SKE + R SA SPP Sbjct: 306 RKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSS-SASSPPKK 364 Query: 161 VGSEEHPHS 169 H HS Sbjct: 365 EHHHHHHHS 373 >gi|7710145 methyl-CpG binding domain protein 2 testis-specific isoform [Homo sapiens] Length = 302 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/23 (65%), Positives = 15/23 (65%) Query: 3 RARRRGGGGGRGRGGKNVGGSGL 25 R R RG G GRGRG GGSGL Sbjct: 82 RGRGRGRGRGRGRGRPPSGGSGL 104 >gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo sapiens] Length = 411 Score = 30.8 bits (68), Expect = 1.9 Identities = 15/23 (65%), Positives = 15/23 (65%) Query: 3 RARRRGGGGGRGRGGKNVGGSGL 25 R R RG G GRGRG GGSGL Sbjct: 82 RGRGRGRGRGRGRGRPPSGGSGL 104 >gi|4503765 fragile X mental retardation 1 [Homo sapiens] Length = 632 Score = 30.4 bits (67), Expect = 2.4 Identities = 12/17 (70%), Positives = 14/17 (82%) Query: 6 RRGGGGGRGRGGKNVGG 22 RR GGGGRG+GG+ GG Sbjct: 532 RRRGGGGRGQGGRGRGG 548 >gi|116006951 polycystin 1-like 2 isoform a [Homo sapiens] Length = 2459 Score = 30.4 bits (67), Expect = 2.4 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%) Query: 109 LSVAAELKDCLGDFIEHYAHLGLKGHRQEHGHSKEQ-GSRRRQKHSAPS 156 LS E+ D L ++ + LG+K R+E G S+EQ GS + +HS P+ Sbjct: 2407 LSEEGEIVDLL--LMKILSFLGIKSKREEPGSSREQPGSLSQTRHSRPA 2453 >gi|41281831 neuronal PAS domain protein 3 isoform 2 [Homo sapiens] Length = 920 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/24 (58%), Positives = 14/24 (58%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLY 31 GGGGG G GG GG S S LY Sbjct: 750 GGGGGGGGGGAGGGGPSASNSLLY 773 >gi|11545847 neuronal PAS domain protein 3 isoform 1 [Homo sapiens] Length = 901 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/24 (58%), Positives = 14/24 (58%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLY 31 GGGGG G GG GG S S LY Sbjct: 731 GGGGGGGGGGAGGGGPSASNSLLY 754 >gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo sapiens] Length = 1941 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Query: 2 ERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQH-------SHYPHYAASATPNQ 50 + A G GGG +GGK G S + S L+ + + S +PH+ PN+ Sbjct: 628 QTAEGEGAGGGAKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNE 683 >gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo sapiens] Length = 1941 Score = 30.4 bits (67), Expect = 2.4 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Query: 2 ERARRRGGGGGRGRGGKNVGGSGLSKSRLYPQAQH-------SHYPHYAASATPNQ 50 + A G GGG +GGK G S + S L+ + + S +PH+ PN+ Sbjct: 628 QTAEGEGAGGGAKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNE 683 >gi|33620755 YEATS domain containing 2 [Homo sapiens] Length = 1422 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/41 (39%), Positives = 18/41 (43%) Query: 8 GGGGGRGRGGKNVGGSGLSKSRLYPQAQHSHYPHYAASATP 48 GGGG G GG GG S + +QH Y Y TP Sbjct: 818 GGGGSTGGGGGTAGGGTQSTAGPGGISQHLTYTSYILKQTP 858 >gi|169214870 PREDICTED: similar to hCG2041260 [Homo sapiens] Length = 412 Score = 30.0 bits (66), Expect = 3.2 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%) Query: 2 ERARRRGGGGG--RGRGGKNVGGSGL 25 ER+ RRG G G R +G +++GGSGL Sbjct: 94 ERSERRGAGAGDERRKGAQHLGGSGL 119 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,271,968 Number of Sequences: 37866 Number of extensions: 676727 Number of successful extensions: 4639 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 43 Number of HSP's that attempted gapping in prelim test: 4205 Number of HSP's gapped (non-prelim): 356 length of query: 347 length of database: 18,247,518 effective HSP length: 103 effective length of query: 244 effective length of database: 14,347,320 effective search space: 3500746080 effective search space used: 3500746080 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.