Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 13786127
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13786127 Cdc42 effector protein 4 [Homo sapiens]
(356 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13786127 Cdc42 effector protein 4 [Homo sapiens] 707 0.0
gi|23238226 CDC42 effector protein 1 [Homo sapiens] 105 5e-23
gi|5802998 Cdc42 effector protein 2 [Homo sapiens] 74 2e-13
gi|19923356 Cdc42 effector protein 3 [Homo sapiens] 74 3e-13
gi|30089966 CDC42 effector protein 5 [Homo sapiens] 70 2e-12
gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens] 40 0.004
gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens] 40 0.004
gi|153070260 myristoylated alanine-rich protein kinase C substra... 39 0.005
gi|60097902 filaggrin [Homo sapiens] 39 0.007
gi|27886561 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.035
gi|27886559 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.035
gi|27886555 nuclear factor of activated T-cells, cytoplasmic, ca... 37 0.035
gi|4758804 nuclear factor of activated T-cells, cytoplasmic, cal... 37 0.035
gi|55741677 SET domain containing 1A [Homo sapiens] 35 0.13
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.18
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 34 0.18
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 34 0.18
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 34 0.18
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 34 0.18
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 34 0.18
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 34 0.18
gi|18079216 CASK interacting protein 1 [Homo sapiens] 33 0.39
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 33 0.39
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 33 0.39
gi|145301567 hypothetical protein LOC56006 [Homo sapiens] 33 0.39
gi|81295809 pericentrin [Homo sapiens] 33 0.39
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.39
gi|56550065 complexin 2 [Homo sapiens] 33 0.39
gi|5729783 complexin 2 [Homo sapiens] 33 0.39
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 33 0.51
>gi|13786127 Cdc42 effector protein 4 [Homo sapiens]
Length = 356
Score = 707 bits (1824), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 1 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP 60
MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP
Sbjct: 1 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP 60
Query: 61 DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP 120
DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP
Sbjct: 61 DGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLP 120
Query: 121 QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD 180
QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD
Sbjct: 121 QLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLD 180
Query: 181 EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYH 240
EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYH
Sbjct: 181 EQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYH 240
Query: 241 GDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMG 300
GDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMG
Sbjct: 241 GDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMG 300
Query: 301 SHTTRDSSSLSSCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDEEEEDEIRV 356
SHTTRDSSSLSSCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDEEEEDEIRV
Sbjct: 301 SHTTRDSSSLSSCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDEEEEDEIRV 356
>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
Length = 391
Score = 105 bits (263), Expect = 5e-23
Identities = 100/298 (33%), Positives = 131/298 (43%), Gaps = 42/298 (14%)
Query: 10 SSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEPDGESLDEQP 69
SS KRR LTA+MIS PLGDFRHTMHVGR GD FGDTSFL++ G
Sbjct: 25 SSSQGKRR----LTADMISHPLGDFRHTMHVGRGGDVFGDTSFLSNHGG--------SSG 72
Query: 70 SSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAE 129
S+ S RS L++K + +R + R + + +KNA+SLPQLN+
Sbjct: 73 STHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAISLPQLNQAAYDS 132
Query: 130 KGTSKLPKSLSSSPVKKANDGE---GGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGD 186
KL S SSP + DG G D T +PR + PH D G
Sbjct: 133 LVVGKL--SFDSSPT-SSTDGHSSYGLDSGFCTISRLPR---SEKPH------DRDRDGS 180
Query: 187 LTDLPVVPKATYGLKHAESIMSFH--IDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEG 244
P GL+ ++S++SF +DLGPS+L ++L +M PE
Sbjct: 181 FPSEP-------GLRRSDSLLSFRLDLDLGPSLLSELLGVMSL----PEAPAAETPAPAA 229
Query: 245 AAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSH 302
T P A PP A PS P A G AA P+P ++ + H
Sbjct: 230 NPPAPTANPTGPAANPPATTANPPAPAANPSAP--AATPTGPAANPPAPAASSTPHGH 285
>gi|5802998 Cdc42 effector protein 2 [Homo sapiens]
Length = 210
Score = 73.9 bits (180), Expect = 2e-13
Identities = 65/218 (29%), Positives = 99/218 (45%), Gaps = 37/218 (16%)
Query: 15 KRRSRADLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGEPDGESLDEQPSSS 72
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K G ++
Sbjct: 18 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTMVEGPEEDG 77
Query: 73 SSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGT 132
+ L +F +++ T RE D L +KNA+SLP + +A T
Sbjct: 78 TFD---LPFQF-----TRTATVCGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 123
Query: 133 SKLPKSLSSSPVKKANDGEGGDEEAGTEE--AVPRRNGAAGPHSPDPLLDEQAFGDLTDL 190
++ P P + +E G+ + +P +P+ +E
Sbjct: 124 AQAP---PKPPRLHLETPQPSPQEGGSVDIWRIPETGSPNSGLTPESGAEEPF------- 173
Query: 191 PVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKE 228
L +A S++S H+DLGPS+L DVL IMD++
Sbjct: 174 ---------LSNASSLLSLHVDLGPSILDDVLQIMDQD 202
>gi|19923356 Cdc42 effector protein 3 [Homo sapiens]
Length = 254
Score = 73.6 bits (179), Expect = 3e-13
Identities = 76/261 (29%), Positives = 114/261 (43%), Gaps = 45/261 (17%)
Query: 2 PILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSK--- 56
PI + ++ K + R L+ +MIS PLGDFRHT+H+G+ G D FGD SFL
Sbjct: 6 PIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQGNYEL 65
Query: 57 -AGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKN 115
G + L + P + FR + S SV E + ++ +
Sbjct: 66 LPGNQEKAHLGQFPGHNEF--------FRANSTSDSVFT-ETPSPVLKNAISLPTIGGSQ 116
Query: 116 AMSLPQLNEKEAAEK----GTSKLPKSLSSSPV--KKANDGEG---------GDEEAGTE 160
A+ LP L+ K G +KLP+ LS PV +KA + GD G+
Sbjct: 117 ALMLPLLSPVTFNSKQESFGPAKLPR-LSCEPVMEEKAQEKSSLLENGTVHQGDTSWGSS 175
Query: 161 EAVPRRNGAAGPHSPDPLLDEQ----AFGDLTDLPVVPKATYGLKHAE--------SIMS 208
+ + + HS L EQ D+ D P + G +E S++S
Sbjct: 176 GSASQSSQGRDSHSSS--LSEQYPDWPAEDMFDHPTPCELIKGKTKSEESLSDLTGSLLS 233
Query: 209 FHIDLGPSMLGDVLSIMDKEE 229
+DLGPS+L +VL++MDK +
Sbjct: 234 LQLDLGPSLLDEVLNVMDKNK 254
>gi|30089966 CDC42 effector protein 5 [Homo sapiens]
Length = 148
Score = 70.5 bits (171), Expect = 2e-12
Identities = 37/63 (58%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 1 MPILKQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEP 60
MP+LKQL + + + R D A ISAPLGDFRHT+HVGR GDAFGDTSFL+ G P
Sbjct: 1 MPVLKQLGPA----QPKKRPDRGALSISAPLGDFRHTLHVGRGGDAFGDTSFLSRHGGGP 56
Query: 61 DGE 63
E
Sbjct: 57 PPE 59
Score = 45.1 bits (105), Expect = 1e-04
Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 36/133 (27%)
Query: 150 GEGGD---------EEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDLPVVPKATYGL 200
G GGD G PR A P SP P P VP++
Sbjct: 37 GRGGDAFGDTSFLSRHGGGPPPEPRAPPAGAPRSPPP-------------PAVPQSA-AP 82
Query: 201 KHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAAP 260
A+ ++SFH+DLGPSML VL +MD PE AA A P P
Sbjct: 83 SPADPLLSFHLDLGPSMLDAVLGVMDAAR--PE-----------AAAAKPDAEPRPGTQP 129
Query: 261 PLARQEGKAGPDL 273
P AR A +L
Sbjct: 130 PQARCRPNADLEL 142
>gi|68348716 AF4/FMR2 family, member 3 isoform 2 [Homo sapiens]
Length = 1251
Score = 39.7 bits (91), Expect = 0.004
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 49 DTSFLNSKAGEPD-GESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLR 107
D+ ++S P G++ E P + +S S+L + S + + QR L +L
Sbjct: 360 DSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEE-NEQQAAQRTALRALS 418
Query: 108 DSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRN 167
DSA+ + P + KG+S S SSS + G D E TE +
Sbjct: 419 DSAV-----VQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSE--TESSSSESE 471
Query: 168 GAAGPHSPDP 177
G+ PH P
Sbjct: 472 GSKPPHFSSP 481
>gi|68348714 AF4/FMR2 family, member 3 isoform 1 [Homo sapiens]
Length = 1226
Score = 39.7 bits (91), Expect = 0.004
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 49 DTSFLNSKAGEPD-GESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLR 107
D+ ++S P G++ E P + +S S+L + S + + QR L +L
Sbjct: 335 DSQLVSSGHNNPKKGDAEPESPDNGTSNTSMLEDDLKLSSDEEE-NEQQAAQRTALRALS 393
Query: 108 DSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRN 167
DSA+ + P + KG+S S SSS + G D E TE +
Sbjct: 394 DSAV-----VQQPNCRTSVPSSKGSSSSSSSGSSSSSSDSESSSGSDSE--TESSSSESE 446
Query: 168 GAAGPHSPDP 177
G+ PH P
Sbjct: 447 GSKPPHFSSP 456
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 39.3 bits (90), Expect = 0.005
Identities = 65/307 (21%), Positives = 102/307 (33%), Gaps = 18/307 (5%)
Query: 44 GDAFGDTSFLNSKAGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDML 103
G F T+ A E GE+ S ++ + K G + G +E+
Sbjct: 2 GAQFSKTAAKGEAAAERPGEAAVASSPSKANGQENGHVKVNGDASPAAAESGAKEELQAN 61
Query: 104 GSL----RDSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGT 159
GS ++ + + P EK E + P++ +SPV+K EG E G+
Sbjct: 62 GSAPAADKEEPAAAGSGAASPSAAEK--GEPAAAAAPEA-GASPVEKEAPAEGEAAEPGS 118
Query: 160 EEAVPRRNGAAGPHSPDPLLDEQAF-GDLTDLPVVPKATYGLKHAESIMSFHIDLGPSML 218
A +A + P ++ A + P K + K + + F
Sbjct: 119 PTAAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKEA 178
Query: 219 GD-VLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLP 277
G+ + E +E GG AG + A A +EG AG D P
Sbjct: 179 GEGGEAEAPAAEGGKDEAAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGD----P 234
Query: 278 SHALEDEGWAAAAPSPGS----ARSMGSHTTRDSSSLSSCTSGILEERSPAFRG-PDRAR 332
A E A P S A S + + ++ E S A G P
Sbjct: 235 QEAKPQEAAVAPEKPPASDETKAAEEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQE 294
Query: 333 AAVSRQP 339
AA + +P
Sbjct: 295 AAPAEEP 301
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 38.9 bits (89), Expect = 0.007
Identities = 69/321 (21%), Positives = 112/321 (34%), Gaps = 49/321 (15%)
Query: 13 HSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEPDGESLDEQPSSS 72
H+ + R+D + S P R T + ++GD + + + G S Q
Sbjct: 1521 HTTPQGRSDASHGQ-SGPRSASRQTRNEEQSGDGSRHSGSRHHEPSTRAGSSRHSQVGQG 1579
Query: 73 SSKRSLLSRKFRGSKRSQ----------SVTRGEREQRDMLGSLRDSALFVKNAMSLPQL 122
S S SR+ +GS SQ S R E R+ GS R+ + ++ P+
Sbjct: 1580 ESAGSKTSRR-QGSSVSQDRDSEGHSEDSERRSESASRNHYGSAREQS---RHGSRNPRS 1635
Query: 123 NEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVP---RRNGAAGPHSPDPLL 179
++++ A G S +S S + A GG + E+A R+G+ S D
Sbjct: 1636 HQEDRASHGHSA--ESSRQSGTRHAETSSGGQAASSQEQARSSPGERHGSRHQQSADSST 1693
Query: 180 DEQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEE----G 235
D G + S++ + G S S EE D + G
Sbjct: 1694 DSGT---------------GRRQDSSVVGDSGNRGSSGSQASDSEGHSEESDTQSVSAHG 1738
Query: 236 EGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGS 295
+ G H T Q+ + G++G L + +H + PS G
Sbjct: 1739 QAGPHQQSHQESTRGQS----------GERSGRSGSFLYQVSTHEQSESAHGRTGPSTGG 1788
Query: 296 ARSMGSHTTRDSSSLSSCTSG 316
+ RDSS S+ G
Sbjct: 1789 RQRSRHEQARDSSRHSASQEG 1809
Score = 31.2 bits (69), Expect = 1.5
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 62 GESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLPQ 121
G S ++S RS SR GS+ + TR E + RD GS R S A S
Sbjct: 865 GHSGSHHSHTTSQGRSDASRGQSGSRSASRTTRNEEQSRD--GS-RHSGSRHHEASSHAD 921
Query: 122 LNEKEAAEKGTSKLPKS--LSSSPVKKANDGEGGDEEAGTEEAVPRRN 167
++ A +G S+ ++ S V + +D EG E++ RN
Sbjct: 922 ISRHSQAGQGQSEGSRTSRRQGSSVSQDSDSEGHSEDSERWSGSASRN 969
>gi|27886561 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 1 [Homo sapiens]
Length = 1075
Score = 36.6 bits (83), Expect = 0.035
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 244 GAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHT 303
G+A T + A + +A+ PL+ G P L +P + A++PSP + G H+
Sbjct: 921 GSATTASPAASHPLASSPLS---GPPSPQLQPMPYQS--PSSGTASSPSPATRMHSGQHS 975
Query: 304 TRDSSS----LSSCTSGILEER-SPAFRGPDRARAAVSRQP-DKEFSF 345
T+ S+ LS+ +S I PA PD A ++ +P D+E +F
Sbjct: 976 TQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIKPEPEDREPNF 1023
>gi|27886559 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 4 [Homo sapiens]
Length = 1045
Score = 36.6 bits (83), Expect = 0.035
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 244 GAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHT 303
G+A T + A + +A+ PL+ G P L +P + A++PSP + G H+
Sbjct: 921 GSATTASPAASHPLASSPLS---GPPSPQLQPMPYQS--PSSGTASSPSPATRMHSGQHS 975
Query: 304 TRDSSS----LSSCTSGILEER-SPAFRGPDRARAAVSRQP-DKEFSF 345
T+ S+ LS+ +S I PA PD A ++ +P D+E +F
Sbjct: 976 TQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIKPEPEDREPNF 1023
>gi|27886555 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 3 [Homo sapiens]
Length = 1065
Score = 36.6 bits (83), Expect = 0.035
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 244 GAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHT 303
G+A T + A + +A+ PL+ G P L +P + A++PSP + G H+
Sbjct: 921 GSATTASPAASHPLASSPLS---GPPSPQLQPMPYQS--PSSGTASSPSPATRMHSGQHS 975
Query: 304 TRDSSS----LSSCTSGILEER-SPAFRGPDRARAAVSRQP-DKEFSF 345
T+ S+ LS+ +S I PA PD A ++ +P D+E +F
Sbjct: 976 TQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIKPEPEDREPNF 1023
>gi|4758804 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 2 [Homo sapiens]
Length = 1068
Score = 36.6 bits (83), Expect = 0.035
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Query: 244 GAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHT 303
G+A T + A + +A+ PL+ G P L +P + A++PSP + G H+
Sbjct: 921 GSATTASPAASHPLASSPLS---GPPSPQLQPMPYQS--PSSGTASSPSPATRMHSGQHS 975
Query: 304 TRDSSS----LSSCTSGILEER-SPAFRGPDRARAAVSRQP-DKEFSF 345
T+ S+ LS+ +S I PA PD A ++ +P D+E +F
Sbjct: 976 TQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIKPEPEDREPNF 1023
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 34.7 bits (78), Expect = 0.13
Identities = 41/154 (26%), Positives = 57/154 (37%), Gaps = 9/154 (5%)
Query: 45 DAFGDTSFLNSKAGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLG 104
D D+S S + DGE+ S SSS S S S S S + E D
Sbjct: 1008 DEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEE 1067
Query: 105 SLRDSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAG--TEEA 162
R +AL +A P+ +P+ ++ SPV + E TEE+
Sbjct: 1068 EERPAAL--PSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEES 1125
Query: 163 VPRR-----NGAAGPHSPDPLLDEQAFGDLTDLP 191
P AGP +P P DE+ + LP
Sbjct: 1126 PPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLP 1159
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 34.3 bits (77), Expect = 0.18
Identities = 56/208 (26%), Positives = 71/208 (34%), Gaps = 26/208 (12%)
Query: 150 GEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDL----PVVPKATYGLKHAES 205
G+ GDE A P G G P P ++ GD+ + P P+ G A+
Sbjct: 1192 GQKGDEGARGFPGPPGPIGLQG--LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG 1249
Query: 206 IMSFHIDLGPSMLGDVLSIMDKEEWDPEE-------GEGGYHGDEGAAGTITQAPPYAVA 258
P +G V + +K E P E GE G G +G G +A P A
Sbjct: 1250 PQG-----PPGSVGSVGGVGEKGE--PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1302
Query: 259 APPLAR-QEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHTTRDSSSLSSCTSGI 317
PP A+ G GP P D G P P +G D G
Sbjct: 1303 GPPGAKGPPGDDGPKGNPGPVGFPGDPG-PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1361
Query: 318 LEERS----PAFRGPDRARAAVSRQPDK 341
E P RGP A A RQ +K
Sbjct: 1362 SGEAGPPGPPGKRGPPGAAGAEGRQGEK 1389
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 34.3 bits (77), Expect = 0.18
Identities = 56/208 (26%), Positives = 71/208 (34%), Gaps = 26/208 (12%)
Query: 150 GEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDL----PVVPKATYGLKHAES 205
G+ GDE A P G G P P ++ GD+ + P P+ G A+
Sbjct: 1141 GQKGDEGARGFPGPPGPIGLQG--LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG 1198
Query: 206 IMSFHIDLGPSMLGDVLSIMDKEEWDPEE-------GEGGYHGDEGAAGTITQAPPYAVA 258
P +G V + +K E P E GE G G +G G +A P A
Sbjct: 1199 PQG-----PPGSVGSVGGVGEKGE--PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1251
Query: 259 APPLAR-QEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHTTRDSSSLSSCTSGI 317
PP A+ G GP P D G P P +G D G
Sbjct: 1252 GPPGAKGPPGDDGPKGNPGPVGFPGDPG-PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1310
Query: 318 LEERS----PAFRGPDRARAAVSRQPDK 341
E P RGP A A RQ +K
Sbjct: 1311 SGEAGPPGPPGKRGPPGAAGAEGRQGEK 1338
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 34.3 bits (77), Expect = 0.18
Identities = 56/208 (26%), Positives = 71/208 (34%), Gaps = 26/208 (12%)
Query: 150 GEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDL----PVVPKATYGLKHAES 205
G+ GDE A P G G P P ++ GD+ + P P+ G A+
Sbjct: 1180 GQKGDEGARGFPGPPGPIGLQG--LPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG 1237
Query: 206 IMSFHIDLGPSMLGDVLSIMDKEEWDPEE-------GEGGYHGDEGAAGTITQAPPYAVA 258
P +G V + +K E P E GE G G +G G +A P A
Sbjct: 1238 PQG-----PPGSVGSVGGVGEKGE--PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAA 1290
Query: 259 APPLAR-QEGKAGPDLPSLPSHALEDEGWAAAAPSPGSARSMGSHTTRDSSSLSSCTSGI 317
PP A+ G GP P D G P P +G D G
Sbjct: 1291 GPPGAKGPPGDDGPKGNPGPVGFPGDPG-PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1349
Query: 318 LEERS----PAFRGPDRARAAVSRQPDK 341
E P RGP A A RQ +K
Sbjct: 1350 SGEAGPPGPPGKRGPPGAAGAEGRQGEK 1377
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 34.3 bits (77), Expect = 0.18
Identities = 68/259 (26%), Positives = 85/259 (32%), Gaps = 31/259 (11%)
Query: 84 RGSKRSQSVTRGEREQRDMLGSLRDSALFV-KNAMSLPQLNEKEAAEKGTSKLPKSLSSS 142
+G+ S G + D R S + K A L QLN E E+G LP
Sbjct: 209 KGTGHEFSAALGTQGPADQRADARASCILAAKTAPGLKQLNG-EPGERGEDGLP----GK 263
Query: 143 PVKKANDGEGGDEEAGTEEAVPRRNGAAG-PHSPDPLLDEQAFGDLTDLPVVPKATYGLK 201
P + GE G E+ GA G P D+ G+L LP GLK
Sbjct: 264 PGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGEL-GLP-------GLK 315
Query: 202 HAESIMSFHIDLGPSMLGDVLSIMDKEEWDP-------EEGEGGYHGDEGAAGTITQAPP 254
GP L S+ P E+G+ G G+ G G + P
Sbjct: 316 GDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGP 375
Query: 255 YAVAAPPLAR-QEGKAG----PDLPSLPSHALEDEGWAAAAPSPGSARSMGSHTTRDSSS 309
PP A+ QEG G P P H G + PGS + G T
Sbjct: 376 QGPTGPPGAKGQEGAHGAPGAAGNPGAPGHV----GAPGPSGPPGSVGAPGLRGTPGKDG 431
Query: 310 LSSCTSGILEERSPAFRGP 328
EE SP GP
Sbjct: 432 ERGEKGAAGEEGSPGPVGP 450
Score = 30.8 bits (68), Expect = 1.9
Identities = 52/205 (25%), Positives = 69/205 (33%), Gaps = 23/205 (11%)
Query: 114 KNAMSLPQLN-----EKEAAEKGTSKLPKSLS------SSPVKKANDGEGGDEEAGTEEA 162
K + LP L + EA G LP + S P ++ GE GD E
Sbjct: 306 KGELGLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPG 365
Query: 163 VPRRNGAAGPHSPDPLLDEQAFGDLTDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVL 222
+ R G GP P + P G A + GP
Sbjct: 366 LQGRPGELGPQGPTGPPGAKGQEGAHGAP----GAAGNPGAPGHVGAPGPSGPPGSVGAP 421
Query: 223 SIMDKEEWDPEEGEGGYHGDEGAAGTI-TQAPPYA--VAAPPLARQEGKAG----PDLPS 275
+ D E GE G G+EG+ G + + P A + PP ++G+ G P LP
Sbjct: 422 GLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPG 481
Query: 276 LPSHALEDEGWAAAAPSPGSARSMG 300
P D G SPGS G
Sbjct: 482 -PLGTKGDRGAPGIPGSPGSRGDPG 505
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 235 GEGGYHGDEGAAGTITQAPP---YAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAP 291
GE G GDEG G PP AP L G AGP +P PS + + G
Sbjct: 403 GERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIP--PSDEICEPGPPGPPG 460
Query: 292 SPGSARSMG 300
SPG G
Sbjct: 461 SPGDKGLQG 469
Score = 28.5 bits (62), Expect = 9.6
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAG-PDLPSLPSHALEDEGWAAAAPSP 293
G G GD G G PP +P + G G P P LP G A A+ P
Sbjct: 840 GIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLP-------GKAGASGFP 892
Query: 294 GSARSMG 300
G+ MG
Sbjct: 893 GTKGEMG 899
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 235 GEGGYHGDEGAAGTITQAPP---YAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAP 291
GE G GDEG G PP AP L G AGP +P PS + + G
Sbjct: 403 GERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIP--PSDEICEPGPPGPPG 460
Query: 292 SPGSARSMG 300
SPG G
Sbjct: 461 SPGDKGLQG 469
Score = 28.5 bits (62), Expect = 9.6
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAG-PDLPSLPSHALEDEGWAAAAPSP 293
G G GD G G PP +P + G G P P LP G A A+ P
Sbjct: 840 GIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLP-------GKAGASGFP 892
Query: 294 GSARSMG 300
G+ MG
Sbjct: 893 GTKGEMG 899
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 34.3 bits (77), Expect = 0.18
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 235 GEGGYHGDEGAAGTITQAPP---YAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAP 291
GE G GDEG G PP AP L G AGP +P PS + + G
Sbjct: 403 GERGQKGDEGPPGISIPGPPGLDGQPGAPGLPGPPGPAGPHIP--PSDEICEPGPPGPPG 460
Query: 292 SPGSARSMG 300
SPG G
Sbjct: 461 SPGDKGLQG 469
Score = 28.5 bits (62), Expect = 9.6
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAG-PDLPSLPSHALEDEGWAAAAPSP 293
G G GD G G PP +P + G G P P LP G A A+ P
Sbjct: 840 GIPGEKGDPGPPGLDVPGPPGERGSPGIPGAPGPIGPPGSPGLP-------GKAGASGFP 892
Query: 294 GSARSMG 300
G+ MG
Sbjct: 893 GTKGEMG 899
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 33.1 bits (74), Expect = 0.39
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 23/141 (16%)
Query: 136 PKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSP--------DPLLDEQAFGDL 187
P SL + VK+A AGTE ++P+ + ++GP +P P G +
Sbjct: 338 PSSLGEAIVKRAGS------RAGTEPSLPQGSSSSGPSAPPEEIWVLRKPFAGGDRSGSI 391
Query: 188 TDLPVVPKATYGLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEGAAG 247
+ + + HA S G +L VLS E P G+ EG+AG
Sbjct: 392 SGMAGGRGSGGHALHAGS-------EGVKLLATVLSQKSVSESGP--GDSPAKPPEGSAG 442
Query: 248 TITQAPPYAVAAPPLARQEGK 268
PP A A Q K
Sbjct: 443 VARSQPPVAHAGQVYGEQPPK 463
Score = 28.9 bits (63), Expect = 7.4
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 1/97 (1%)
Query: 253 PPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAP-SPGSARSMGSHTTRDSSSLS 311
PP A+P G +P+ P A AAAAP +P S G + S
Sbjct: 1318 PPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAAPPAPPEGASPGDSARQKLEETS 1377
Query: 312 SCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDE 348
+C + L+ R D S S +D+
Sbjct: 1378 ACLAAALQAVEEKIRQEDAQGPRDSAAEKSTGSILDD 1414
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.39
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQ--EGKAGPDL------PSLPSHALEDEGW 286
G G G AP V+ PP + + G A P PS+P + + G
Sbjct: 87 GGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGA 146
Query: 287 AAAAPSPGSARSMGSHTTRDSSSLSSCTSGIL 318
AAA + GS R+ GS T S +SC +L
Sbjct: 147 AAATATAGSRRAAGSTT---GSVTTSCRRALL 175
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 33.1 bits (74), Expect = 0.39
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQ--EGKAGPDL------PSLPSHALEDEGW 286
G G G AP V+ PP + + G A P PS+P + + G
Sbjct: 87 GGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGA 146
Query: 287 AAAAPSPGSARSMGSHTTRDSSSLSSCTSGIL 318
AAA + GS R+ GS T S +SC +L
Sbjct: 147 AAATATAGSRRAAGSTT---GSVTTSCRRALL 175
>gi|145301567 hypothetical protein LOC56006 [Homo sapiens]
Length = 520
Score = 33.1 bits (74), Expect = 0.39
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 233 EEGEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPS 292
EEG+G + T PP A APP +EG+ P+ P + +++ G AAP+
Sbjct: 105 EEGKGPVAVTGASTPEGTAPPPPAAPAPPKGEKEGQR----PTQPVYQIQNRGMGTAAPA 160
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 33.1 bits (74), Expect = 0.39
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 13/121 (10%)
Query: 242 DEGAAGTITQAPPYA-----VAAPPLARQEGKAGP--DLPSLPSHALEDEGWAAAAPSPG 294
D GA ++ AP VA P L R + + + SH E + SP
Sbjct: 1193 DAGAGLALSTAPALEETWSDVALPELDRTLSECAEMSSVAEISSHMRE-----SFLMSPE 1247
Query: 295 SARSMGSHTTRDSSSLSSCTSGILEERSPAFRGPDRARAAVSRQPDKEFSFMDEEEEDEI 354
S R R SLS G++E + R + AR SR +KEFSF +EE +
Sbjct: 1248 SVRECEQPIRRVFQSLSLAVDGLMEMALDSSRQLEEARQIHSRF-EKEFSFKNEETAQVV 1306
Query: 355 R 355
R
Sbjct: 1307 R 1307
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.1 bits (74), Expect = 0.39
Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 20/201 (9%)
Query: 132 TSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDLP 191
TS K + + + + G GG +E + ++ AAG P + GDL P
Sbjct: 2470 TSPKSKKAKEALLLREDPGAGGWQEPKSLLSLGSYPPAAGSSEPKAPWPKATDGDLAQEP 2529
Query: 192 VVPKATY-----------------GLKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEE 234
P T+ G + +ES S G S S E EE
Sbjct: 2530 G-PGLTFEDSGNPKSPDKAQAEQDGAEESESSSSS--SSGSSSSSSSSSSSGSETEGEEE 2586
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLPSLPSHALEDEGWAAAAPSPG 294
G+ G G G A A+P + + S S + ++++ S
Sbjct: 2587 GDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Query: 295 SARSMGSHTTRDSSSLSSCTS 315
S+ S S ++ SSS SS +S
Sbjct: 2647 SSSSSSSSSSSSSSSSSSSSS 2667
Score = 28.9 bits (63), Expect = 7.4
Identities = 39/185 (21%), Positives = 60/185 (32%), Gaps = 9/185 (4%)
Query: 5 KQLVSSSVHSKRRSRADLTAEMISAPLGDFRHTMHVGRAGDAFGDTSFLNSKAGEPDGES 64
K L+S + ++ A A GD G + G+ + E DG
Sbjct: 2496 KSLLSLGSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQAEQDGAE 2555
Query: 65 LDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDM------LGSLRDSALFVKNAMS 118
E SSSSS S S S S S T GE E G SA + A
Sbjct: 2556 ESESSSSSSSGSSSSS---SSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASP 2612
Query: 119 LPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPL 178
+ ++ +S S SSS ++ + + + + ++ S
Sbjct: 2613 ASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Query: 179 LDEQA 183
DE +
Sbjct: 2673 TDEDS 2677
>gi|56550065 complexin 2 [Homo sapiens]
Length = 134
Score = 33.1 bits (74), Expect = 0.39
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 48 GDTSFLNSKAGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLR 107
G T + G + + D Q + +L ++ +R R E E+ + +R
Sbjct: 11 GATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQE---EERKAKHARMEAEREKVRQQIR 67
Query: 108 DSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAV 163
D L + EKEA EK + P S + KKA GDEE EE++
Sbjct: 68 DK-------YGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESI 116
>gi|5729783 complexin 2 [Homo sapiens]
Length = 134
Score = 33.1 bits (74), Expect = 0.39
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 48 GDTSFLNSKAGEPDGESLDEQPSSSSSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLR 107
G T + G + + D Q + +L ++ +R R E E+ + +R
Sbjct: 11 GATKDMGKMLGGEEEKDPDAQKKEEERQEALRQQE---EERKAKHARMEAEREKVRQQIR 67
Query: 108 DSALFVKNAMSLPQLNEKEAAEKGTSKLPKSLSSSPVKKANDGEGGDEEAGTEEAV 163
D L + EKEA EK + P S + KKA GDEE EE++
Sbjct: 68 DK-------YGLKKKEEKEAEEKAALEQPCEGSLTRPKKAIPAGCGDEEEEEEESI 116
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 32.7 bits (73), Expect = 0.51
Identities = 43/167 (25%), Positives = 55/167 (32%), Gaps = 22/167 (13%)
Query: 140 SSSPVKKANDGEGGDEEAGTEEAVPRRNGAAGPHSPDPLLDEQAFGDLTDLPVVPKATYG 199
S P DG+ G ++ RNGA G P+ LP +P G
Sbjct: 297 SGEPGMPGKDGQNGVPGLDGQKGEAGRNGAPGEKGPN------------GLPGLPGRA-G 343
Query: 200 LKHAESIMSFHIDLGPSMLGDVLSIMDKEEWDPEEGEGGYHGDEGAAGTITQAPPYAVAA 259
K + +LG + + E GE G+ G GA G Q PP A
Sbjct: 344 SKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALG--PQGPPGAPGV 401
Query: 260 PPLARQEGKAGPDLPSLPSHA-----LEDEGWAAAAPSPGSARSMGS 301
Q+G G P LP + D G AA G GS
Sbjct: 402 RGFQGQKGSMGD--PGLPGPQGLRGDVGDRGPGGAAGPKGDQGIAGS 446
Score = 29.3 bits (64), Expect = 5.6
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 17/89 (19%)
Query: 235 GEGGYHGDEGAAGTITQAPPYAVAAPPLARQEGKAGPDLP-SLPSHALEDEGWAAAAP-- 291
G G GD+GAAG P EG GP P +P + + + A P
Sbjct: 596 GNQGDRGDKGAAGAGLDGP------------EGDQGPQGPQGVPGTSKDGQDGAPGEPGP 643
Query: 292 --SPGSARSMGSHTTRDSSSLSSCTSGIL 318
PG ++G+ T S+C +L
Sbjct: 644 PGDPGLPGAIGAQGTPGICDTSACQGAVL 672
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,509,378
Number of Sequences: 37866
Number of extensions: 828270
Number of successful extensions: 4058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 3779
Number of HSP's gapped (non-prelim): 414
length of query: 356
length of database: 18,247,518
effective HSP length: 103
effective length of query: 253
effective length of database: 14,347,320
effective search space: 3629871960
effective search space used: 3629871960
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.