Guide to the Human Genome
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Name: OR12D3 Sequence: fasta or formatted (316aa) NCBI GI: 13624335
Description:

olfactory receptor, family 12, subfamily D, member 3

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         20           4
 C cysteine            3.5         11           1
 D aspartate           1.9          6           1
 E glutamate           2.2          7           1
 F phenylalanine       8.9         28           3
 G glycine             4.7         15           1
 H histidine           3.2         10           2
 I isoleucine          7.9         25           2
 K lysine              3.2         10           2
 L leucine            15.8         50           3
 M methionine          4.7         15           2
 N asparagine          4.1         13           1
 P proline             3.5         11           1
 Q glutamine           3.2         10           2
 R arginine            3.2         10           2
 S serine              7.6         24           2
 T threonine           5.1         16           2
 V valine              6.6         21           2
 W tryptophan          0.9          3           1
 Y tyrosine            3.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 12, subfamily D, member 3... 
OR12D2                0.646   olfactory receptor, family 12, subfamily D, member 2...
OR5AP2                0.413   olfactory receptor, family 5, subfamily AP, member 2...
OR5V1                 0.408   olfactory receptor, family 5, subfamily V, member 1 ...
OR4D5                 0.402   olfactory receptor, family 4, subfamily D, member 5 ...
OR1A1                 0.398   olfactory receptor, family 1, subfamily A, member 1 [...
OR4K2                 0.398   olfactory receptor, family 4, subfamily K, member 2 ...
OR1J2                 0.398   olfactory receptor, family 1, subfamily J, member 2 ...
OR10G7                0.397   olfactory receptor, family 10, subfamily G, member 7...
OR1N1                 0.395   olfactory receptor, family 1, subfamily N, member 1 ...
OR1E1                 0.395   olfactory receptor, family 1, subfamily E, member 1...
OR2A25                0.393   olfactory receptor, family 2, subfamily A, member 25...
OR5AR1                0.393   olfactory receptor, family 5, subfamily AR, member 1...
OR4E2                 0.393   olfactory receptor, family 4, subfamily E, member 2 ...
OR4S2                 0.393   olfactory receptor, family 4, subfamily S, member 2...
OR5F1                 0.392   olfactory receptor, family 5, subfamily F, member 1 ...
OR1M1                 0.392   olfactory receptor, family 1, subfamily M, member 1 ...
OR13C4                0.390   olfactory receptor, family 13, subfamily C, member 4...
OR5T3                 0.389   olfactory receptor, family 5, subfamily T, member 3 ...
OR5M10                0.387   olfactory receptor, family 5, subfamily M, member 10...
OR10G4                0.387   olfactory receptor, family 10, subfamily G, member 4...
OR13D1                0.387   olfactory receptor, family 13, subfamily D, member 1...
OR1L4                 0.387   olfactory receptor, family 1, subfamily L, member 4 ...
OR10G9                0.385   olfactory receptor, family 10, subfamily G, member 9...
OR8H1                 0.385   olfactory receptor, family 8, subfamily H, member 1 ...
OR7C1                 0.385   olfactory receptor, family 7, subfamily C, member 1 ...
OR2A12                0.385   olfactory receptor, family 2, subfamily A, member 12...
OR1L6                 0.385   olfactory receptor, family 1, subfamily L, member 6 ...
OR4B1                 0.384   olfactory receptor, family 4, subfamily B, member 1 ...
OR8D4                 0.384   olfactory receptor, family 8, subfamily D, member 4 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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