Search of human proteins with 68509938

Search of human proteins with 68509938

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
         (197 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|68509938 Golli-mbp isoform 2 [Homo sapiens]                        399   e-111
gi|68509940 Golli-mbp isoform 1 [Homo sapiens]                        390   e-109
gi|68509930 myelin basic protein isoform 1 [Homo sapiens]             127   6e-30
gi|4505123 myelin basic protein isoform 2 [Homo sapiens]              127   6e-30
gi|68509932 myelin basic protein isoform 4 [Homo sapiens]             126   1e-29
gi|68509928 myelin basic protein isoform 3 [Homo sapiens]             126   1e-29
gi|60097902 filaggrin [Homo sapiens]                                   44   9e-05
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]    41   6e-04
gi|150378498 fragile site-associated protein [Homo sapiens]            37   0.011
gi|38788333 remodeling and spacing factor 1 [Homo sapiens]             35   0.054
gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]     33   0.12 
gi|4505999 protein phosphatase 1G [Homo sapiens]                       33   0.16 
gi|29826282 protein phosphatase 1G [Homo sapiens]                      33   0.16 
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]         33   0.20 
gi|88759339 aster-associated protein [Homo sapiens]                    33   0.20 
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H...    32   0.27 
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]           32   0.35 
gi|42821110 hypothetical protein LOC340602 [Homo sapiens]              31   0.60 
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof...    31   0.60 
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof...    31   0.60 
gi|57864582 hornerin [Homo sapiens]                                    31   0.78 
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof...    31   0.78 
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof...    31   0.78 
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof...    31   0.78 
gi|55770834 centromere protein F [Homo sapiens]                        31   0.78 
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]     30   1.0  
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    30   1.0  
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    30   1.0  
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    30   1.0  
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    30   1.0  

>gi|68509938 Golli-mbp isoform 2 [Homo sapiens]
          Length = 197

 Score =  399 bits (1024), Expect = e-111
 Identities = 197/197 (100%), Positives = 197/197 (100%)

Query: 1   MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
           MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
Sbjct: 1   MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60

Query: 61  DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
           DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
Sbjct: 61  DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120

Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
           QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
Sbjct: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180

Query: 181 GDRGAPKRGSGKVSSEE 197
           GDRGAPKRGSGKVSSEE
Sbjct: 181 GDRGAPKRGSGKVSSEE 197


>gi|68509940 Golli-mbp isoform 1 [Homo sapiens]
          Length = 304

 Score =  390 bits (1003), Expect = e-109
 Identities = 193/194 (99%), Positives = 193/194 (99%)

Query: 1   MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
           MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ
Sbjct: 1   MGNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60

Query: 61  DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
           DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI
Sbjct: 61  DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120

Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
           QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG
Sbjct: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180

Query: 181 GDRGAPKRGSGKVS 194
           GDRGAPKRGSGK S
Sbjct: 181 GDRGAPKRGSGKDS 194


>gi|68509930 myelin basic protein isoform 1 [Homo sapiens]
          Length = 197

 Score =  127 bits (319), Expect = 6e-30
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60


>gi|4505123 myelin basic protein isoform 2 [Homo sapiens]
          Length = 186

 Score =  127 bits (319), Expect = 6e-30
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60


>gi|68509932 myelin basic protein isoform 4 [Homo sapiens]
          Length = 160

 Score =  126 bits (316), Expect = 1e-29
 Identities = 60/61 (98%), Positives = 60/61 (98%)

Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK 
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60

Query: 194 S 194
           S
Sbjct: 61  S 61


>gi|68509928 myelin basic protein isoform 3 [Homo sapiens]
          Length = 171

 Score =  126 bits (316), Expect = 1e-29
 Identities = 60/61 (98%), Positives = 60/61 (98%)

Query: 134 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 193
           MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK 
Sbjct: 1   MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKD 60

Query: 194 S 194
           S
Sbjct: 61  S 61


>gi|60097902 filaggrin [Homo sapiens]
          Length = 4061

 Score = 43.9 bits (102), Expect = 9e-05
 Identities = 43/199 (21%), Positives = 84/199 (42%), Gaps = 27/199 (13%)

Query: 4    HAGKRELNAEK---ASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEA-DANQNNGTSS 59
            H+G R   A      S +S+  +G+SE  R       + S+D++  G + D+ + +G++S
Sbjct: 908  HSGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQGSSVSQDSDSEGHSEDSERWSGSAS 967

Query: 60   QDTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQT 119
            ++      + +A  ++     HP          R    D  G   +    R S +   +T
Sbjct: 968  RN-----HRGSAQEQSRHGSRHP----------RSHHEDRAGHGHSADSSRQSGTPHAET 1012

Query: 120  IQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRF- 178
                 AA+S       ++  P +RHGS++  +A   D +RH  +PR + +  +   G + 
Sbjct: 1013 SSGGQAASSHE----QARSSPGERHGSRHQQSA---DSSRHSGIPRRQASSAVRDSGHWG 1065

Query: 179  FGGDRGAPKRGSGKVSSEE 197
              G + +   G  + S  +
Sbjct: 1066 SSGSQASDSEGHSEESDTQ 1084



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 39/184 (21%), Positives = 78/184 (42%), Gaps = 24/184 (13%)

Query: 16   STNSETNRGESEKKRNLGELSRTTSEDNEVFGEA-DANQNNGTSSQDTAVTDSKRTADPK 74
            S +S+  +G+SE  R       + S+D++  G + D+ + +G++S++      + +   +
Sbjct: 3192 SRHSQAVQGQSEGSRRSRRQGSSVSQDSDSEGHSEDSERWSGSASRN-----HRGSVQEQ 3246

Query: 75   NAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVM 134
            +     HP          R    D  G   +  + R S +   +T     AA+S      
Sbjct: 3247 SRHGSRHP----------RSHHEDRAGHGHSADRSRQSGTRHAETSSGGQAASSHE---- 3292

Query: 135  ASQKRPSQRHGSKYLATASTMDHARHGFLPR-HRDTGILDSIGRFFGGDRGAPKRGSGKV 193
             ++  P +RHGS++  +A   D +RH  +PR    + + DS      G + +   G  + 
Sbjct: 3293 QARSSPGERHGSRHQQSA---DSSRHSGIPRGQASSAVRDSRHWGSSGSQASDSEGHSEE 3349

Query: 194  SSEE 197
            S  +
Sbjct: 3350 SDTQ 3353



 Score = 35.0 bits (79), Expect = 0.041
 Identities = 37/198 (18%), Positives = 77/198 (38%), Gaps = 25/198 (12%)

Query: 4    HAGKRELNAEK---ASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQ 60
            H+G R         +S +S+  +GES   +       + S+D +  G ++ ++    S+ 
Sbjct: 1556 HSGSRHHEPSTRAGSSRHSQVGQGESAGSKTSRRQGSSVSQDRDSEGHSEDSERRSESAS 1615

Query: 61   DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
                  ++  +   +    +H  D  S  H              +    R S +   +T 
Sbjct: 1616 RNHYGSAREQSRHGSRNPRSHQEDRASHGH--------------SAESSRQSGTRHAETS 1661

Query: 121  QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGIL-DSIGRFF 179
                AA+S+      ++  P +RHGS++  +A +   +  G   R +D+ ++ DS  R  
Sbjct: 1662 SGGQAASSQE----QARSSPGERHGSRHQQSADSSTDSGTG---RRQDSSVVGDSGNRGS 1714

Query: 180  GGDRGAPKRGSGKVSSEE 197
             G + +   G  + S  +
Sbjct: 1715 SGSQASDSEGHSEESDTQ 1732



 Score = 31.2 bits (69), Expect = 0.60
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 21/207 (10%)

Query: 2    GNHAGKRELNAEKASTNSETNRGESEKKR-NLGELSRTTSEDNEVFGEADANQNNGTS-S 59
            G+ +  R+   +K S +   + G    +  +  + SR +    E    +  +++ G+S S
Sbjct: 1212 GSRSASRQTRKDKQSGDGSRHSGSRHHEAASWADSSRHSQVGQEQSSGSRTSRHQGSSVS 1271

Query: 60   QDTAVTDSKRTADPKNAWQDAHPADPGSRPH--LIRLFSRDAPGREDNTFKDRPSESDEL 117
            QD+   DS+R +D       +      SR H    R  SRD         +DR S     
Sbjct: 1272 QDS---DSERHSDDSERLSGS-----ASRNHHGSSREQSRDGSRHPGFHQEDRASHGHSA 1323

Query: 118  QTIQEDSAATSESLD---VMASQKR----PSQRHGSKYLATASTMDHARHGFLPRHRDTG 170
             + ++     +ES      ++S ++    P +RHGS++  +A +  H+  G   R   + 
Sbjct: 1324 DSSRQSGTHHTESSSHGQAVSSHEQARSSPGERHGSRHQQSADSSRHS--GIGHRQASSA 1381

Query: 171  ILDSIGRFFGGDRGAPKRGSGKVSSEE 197
            + DS  R   G +     G  + S  +
Sbjct: 1382 VRDSGHRGSSGSQVTNSEGHSEDSDTQ 1408


>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
          Length = 1301

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 11  NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRT 70
           +++  S+ SE++  +S+ K +  + + + S DN    ++  + N+  SS  +  +DS  +
Sbjct: 621 DSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSS 680

Query: 71  ADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSES 130
           +D  N+   +  +D  +        S D+    D+   D  S+S    +   DS+ +S+S
Sbjct: 681 SDSSNSSDSSDSSDSSNSSE-----SSDSSDSSDSDSSD-SSDSSNSNSSDSDSSNSSDS 734

Query: 131 LD 132
            D
Sbjct: 735 SD 736



 Score = 33.9 bits (76), Expect = 0.092
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 8/158 (5%)

Query: 2   GNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQD 61
           GN+       ++     S+++  +S    N  + S ++  D+     +D+N ++ + S D
Sbjct: 530 GNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDS-----SDSNSSSDSDSSD 584

Query: 62  TAVTDS--KRTADPKNAWQDAHPADPG-SRPHLIRLFSRDAPGREDNTFKDRPSESDELQ 118
           +  +DS    ++D  N+   +  +D   S        S+    + ++   D  S+SD   
Sbjct: 585 SDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSD 644

Query: 119 TIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMD 156
           +   DS+  S+S D   S         S    ++S+ D
Sbjct: 645 SNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSD 682



 Score = 32.0 bits (71), Expect = 0.35
 Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 11   NAEKASTNSETNRGESEKKRNLGELSRTT-SEDNEVFGEADANQNNGTSSQDTAVTDSKR 69
            N+  + ++  +N  +S    N  + S ++ S DN    ++  + ++  SS  +  +DS  
Sbjct: 899  NSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSN 958

Query: 70   TADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSE 129
            ++D  N+   +  +D  S        S D+    D++     S+S        DS+ +S+
Sbjct: 959  SSDSSNS---SDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSN----SSDSSDSSD 1011

Query: 130  SLDVMASQKRPSQRHGSKYLATASTMD 156
            S D   S    +    S    ++ + D
Sbjct: 1012 SSDSSNSSDSSNSSDSSNSSDSSDSSD 1038



 Score = 31.2 bits (69), Expect = 0.60
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 5/147 (3%)

Query: 11   NAEKASTNSETNRGESEKKRNLGELSRTT-SEDNEVFGEADANQNNGTSSQDTAVTDSKR 69
            N+  +S +S ++  +S    N  + S ++ S D+     +  N N+  SS     +DS  
Sbjct: 890  NSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNS---SDSSD 946

Query: 70   TADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSE 129
            ++D  N+   ++ +D  +        S D+    +++     S+S +  +   DS+ +S+
Sbjct: 947  SSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSD-SSDSSDSSNSSD 1005

Query: 130  SLDVMASQKRPSQRHGSKYLATASTMD 156
            S D   S    +    S    ++++ D
Sbjct: 1006 SSDSSDSSDSSNSSDSSNSSDSSNSSD 1032


>gi|150378498 fragile site-associated protein [Homo sapiens]
          Length = 5005

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 4    HAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDT- 62
            + G R  NA+   TN+E N+ ES  K +LG   R TS+ +   G  D   +      D+ 
Sbjct: 2630 NGGNRVNNAKNKRTNNENNKKESRNKNSLGRSERRTSKVSRK-GSKDVVDHMTIHMDDSD 2688

Query: 63   AVTDSKRTADPKNAWQDAH 81
            ++T S+++      WQ+ +
Sbjct: 2689 SITVSEQSEPSAECWQNMY 2707


>gi|38788333 remodeling and spacing factor 1 [Homo sapiens]
          Length = 1441

 Score = 34.7 bits (78), Expect = 0.054
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 15/116 (12%)

Query: 7    KRELNAEKA-----STNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQD 61
            KR L++ ++     S NSE +    E KR++ +  R+T E +E   E +  +   +  + 
Sbjct: 1241 KRRLSSSESEESYLSKNSEDDELAKESKRSVRKRGRSTDEYSEADEEEEEEEGKPSRKRL 1300

Query: 62   TAV-TDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDE 116
              + TD + + D  NA  DA+     S+P ++       P  +++T K    ESDE
Sbjct: 1301 HRIETDEEESCD--NAHGDANQPARDSQPRVL-------PSEQESTKKPYRIESDE 1347


>gi|14210514 piggyBac transposable element derived 1 [Homo sapiens]
          Length = 809

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 29  KRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTD--SKRTADPKNAWQDAHPADPG 86
           K  L +  + TSE+ E  GEA    N   + Q    T   ++RT    N  +D HP D  
Sbjct: 264 KDRLFKAKQETSEEMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLW 323

Query: 87  SRPHLIRLFSRDAPGREDNTFKDRPSESDELQ 118
           +R H+  L             KD+   S+ LQ
Sbjct: 324 ARMHISSLEYAAGDITRKGRKKDKARVSELLQ 355


>gi|4505999 protein phosphatase 1G [Homo sapiens]
          Length = 546

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 11  NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNN-------GTSSQDTA 63
           N  K   +S++  G  E+  + G       ED+    E  + +N        G SS    
Sbjct: 163 NCHKGPPHSKSGGGTGEEPGSQGLNGEAGPEDST--RETPSQENGPTAKAYTGFSSNSER 220

Query: 64  VTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQED 123
            T++ +  +P     +A P+   +   L R+        +   F+D   ESDE +  +ED
Sbjct: 221 GTEAGQVGEPGIPTGEAGPSCSSASDKLPRV-------AKSKFFEDSEDESDEAEEEEED 273

Query: 124 SAATSESLDVMASQKRPSQ 142
           S   SE  D  +S++  ++
Sbjct: 274 SEECSEEEDGYSSEEAENE 292


>gi|29826282 protein phosphatase 1G [Homo sapiens]
          Length = 546

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 11  NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNN-------GTSSQDTA 63
           N  K   +S++  G  E+  + G       ED+    E  + +N        G SS    
Sbjct: 163 NCHKGPPHSKSGGGTGEEPGSQGLNGEAGPEDST--RETPSQENGPTAKAYTGFSSNSER 220

Query: 64  VTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQED 123
            T++ +  +P     +A P+   +   L R+        +   F+D   ESDE +  +ED
Sbjct: 221 GTEAGQVGEPGIPTGEAGPSCSSASDKLPRV-------AKSKFFEDSEDESDEAEEEEED 273

Query: 124 SAATSESLDVMASQKRPSQ 142
           S   SE  D  +S++  ++
Sbjct: 274 SEECSEEEDGYSSEEAENE 292


>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
          Length = 1962

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 15  ASTNSET-NRGESEKKRNLGELSRTTSE---DNEVFGEADANQNNGTSSQDTAVTDSKRT 70
           A TN +  N GE +  +N  +++ +TS    +N   G   +  ++ T+ ++  V+D    
Sbjct: 177 ALTNQQPQNNGEVQNSKNQSDINHSTSGSHYENSQRGPVSSTSDSSTNCKNAVVSDLSE- 235

Query: 71  ADPKNAWQDAHPADPGSRPHL 91
              K AW    P+ PGS P L
Sbjct: 236 ---KEAW----PSAPGSDPEL 249


>gi|88759339 aster-associated protein [Homo sapiens]
          Length = 647

 Score = 32.7 bits (73), Expect = 0.20
 Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 19/160 (11%)

Query: 2   GNHAGKRELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQD 61
           GN +GK     E+ + N  + + +  K+ +      TT+ +     +  A+      ++ 
Sbjct: 262 GNASGKDP--NEEITENHNSLKSDENKENSFSADHVTTAVEKSKESQVTADDLEEEKAKA 319

Query: 62  TAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQ 121
             + D  RT DP  +   +             L S  A      T +DR  ++ +    +
Sbjct: 320 ELIMDDDRTVDPLLSKSQS------------ILISTSATASSKKTIEDRNIKNKKSTNNR 367

Query: 122 EDSAA----TSESLDVMASQKR-PSQRHGSKYLATASTMD 156
             SA+    TSE L   +S++R PS    S YL T   +D
Sbjct: 368 ASSASARLMTSEFLKKSSSKRRTPSTTTSSHYLGTLKVLD 407


>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
           sapiens]
          Length = 1094

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 27/146 (18%), Positives = 68/146 (46%), Gaps = 13/146 (8%)

Query: 11  NAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRT 70
           ++  + + S +  GE  +    G+ +  +SED+    ++++ + +G  ++ TA  +SK  
Sbjct: 688 SSSDSESESGSESGEQGESGEEGDSNEDSSEDSSSEQDSESGRESGLENKRTAKRNSK-- 745

Query: 71  ADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSES 130
           A  K+  +D    +  S+       + D+   E ++ +D  S+S+     + +  + SES
Sbjct: 746 AKGKSDSEDGEKENEKSK-------TSDSSNDESSSIEDSSSDSES----ESEPESESES 794

Query: 131 LDVMASQKRPSQRHGSKYLATASTMD 156
             V   +++ +++  +      S +D
Sbjct: 795 RRVTKEKEKKTKQDRTPLTKDVSLLD 820


>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
          Length = 1989

 Score = 32.0 bits (71), Expect = 0.35
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 40  SEDNEVFGEADANQNNGTSSQDTAVTDSKRTAD----PKNAWQDAHPADPGSRPHLI--- 92
           S+D+E  GEA  + N+     ++ + +++RTA+    PK   +     DP   P  +   
Sbjct: 714 SDDSESDGEASKSTNSVFGGLESMIKEARRTAEQASKPKVPPKSEKENDPLRTPEALPEE 773

Query: 93  -----RLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLD 132
                RL   +   RE    K R  +SD+L+T     A +   +D
Sbjct: 774 KKIEYRLLKEEIANRE----KQRLIKSDQLKTSSSSPANSDVEID 814


>gi|42821110 hypothetical protein LOC340602 [Homo sapiens]
          Length = 503

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 9/158 (5%)

Query: 8   RELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDS 67
           R   ++    ++ T  G   + R+  + S   S    + G AD N + GT S+  A    
Sbjct: 326 RTARSDAGHRSTSTTPGTGLRSRSTQQRSALLSR-RSLSGSADENPSCGTGSERLAFQSR 384

Query: 68  KRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAAT 127
             + DP+   + + P     R   +R  S   PGR    F   P + DE  +    S ++
Sbjct: 385 SGSPDPEVPSRASPPVWHAVR---MRASSPSPPGR---FFLPIPQQWDESSSSSYASNSS 438

Query: 128 SESLDVMASQKRPSQRH-GSKYLATASTMDHARHGFLP 164
           S S     S   PS    G + ++T S  +  R+  +P
Sbjct: 439 SPSRSPGLSPSSPSPEFLGLRSISTPSP-ESLRYALMP 475


>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           9 [Homo sapiens]
          Length = 771

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 88  RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRH 144
           R H + +  R++P R +++ +DR  E D L        +  E +     +KR  ++H
Sbjct: 54  RDHCMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKKH 110


>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           8 [Homo sapiens]
          Length = 780

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 88  RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRH 144
           R H + +  R++P R +++ +DR  E D L        +  E +     +KR  ++H
Sbjct: 54  RDHCMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKKH 110


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 30.8 bits (68), Expect = 0.78
 Identities = 34/194 (17%), Positives = 67/194 (34%), Gaps = 15/194 (7%)

Query: 2   GNHAGKRELNAEKASTNSETNRGESEKKRNLGE-LSRTTSEDNEVFGEADANQNNGTSSQ 60
           G H      ++     NS++++     +   G   S    +     G++ +N  +G+ S 
Sbjct: 167 GQHNSYSGQSSSYGEQNSDSHQSSGRGQCGSGSGQSPNYGQHGSGSGQSSSNDTHGSGSG 226

Query: 61  DTAVTDSKRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDELQTI 120
            ++     +++  +++    H +  G      +  SR          +            
Sbjct: 227 QSSGFSQHKSSSGQSSGYSQHGSGSGHSSGYGQHGSRSGQSSRGERHRS----------- 275

Query: 121 QEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFG 180
              S+ +S S     S  R S  HG +   +  +  H RHG    H  +      G  + 
Sbjct: 276 ---SSGSSSSYGQHGSGSRQSLGHGRQGSGSRQSPSHVRHGSGSGHSSSHGQHGSGSSYS 332

Query: 181 GDRGAPKRGSGKVS 194
             RG  + GSG+ S
Sbjct: 333 YSRGHYESGSGQTS 346


>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           5 [Homo sapiens]
          Length = 748

 Score = 30.8 bits (68), Expect = 0.78
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 88  RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSK 147
           R H + +  R++P R +++ +DR  E D L        +  E +     +KR  +R    
Sbjct: 20  RDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKRRHRS 79

Query: 148 YLATASTMDHAR-------HGFLPRHRD 168
           + A      HAR       H    RHR+
Sbjct: 80  HSAEGG--KHARVKEKEREHERRKRHRE 105


>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           4 [Homo sapiens]
          Length = 737

 Score = 30.8 bits (68), Expect = 0.78
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 88  RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRH 144
           R H + +  R++P R +++ +DR  E D L        +  E +     +KR  ++H
Sbjct: 20  RDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKKH 76


>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
           2 [Homo sapiens]
          Length = 782

 Score = 30.8 bits (68), Expect = 0.78
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 88  RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSK 147
           R H + +  R++P R +++ +DR  E D L        +  E +     +KR  +R    
Sbjct: 54  RDHRMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKRRHRS 113

Query: 148 YLATASTMDHAR-------HGFLPRHRD 168
           + A      HAR       H    RHR+
Sbjct: 114 HSAEGG--KHARVKEKEREHERRKRHRE 139


>gi|55770834 centromere protein F [Homo sapiens]
          Length = 3114

 Score = 30.8 bits (68), Expect = 0.78
 Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 34   ELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDSKRTADPKNAWQD------AHPADPGS 87
            ELS  TSE N++ GE D      T+    +    ++T + ++   +         A+   
Sbjct: 1952 ELSVVTSERNQLRGELDTMSKKTTALDQLSEKMKEKTQELESHQSECLHCIQVAEAEVKE 2011

Query: 88   RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATS 128
            +  L++  S D         KD+    ++LQ++++DS A S
Sbjct: 2012 KTELLQTLSSDV----SELLKDKTHLQEKLQSLEKDSQALS 2048


>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
          Length = 780

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 88  RPHLIRLFSRDAPGREDNTFKDRPSESDELQTIQEDSAATSESLDVMASQKRPSQ-RHGS 146
           R H + +  R++P R +++ +DR  E D L        +  E +     +KR  + RH S
Sbjct: 54  RDHCMEITIRNSPYRREDSMEDRGEEDDSLAIKPPQQMSRKEKVHHRKDEKRKEKCRHHS 113

Query: 147 KYLATASTMDHAR-----HGFLPRHRD 168
               +A    HAR     H    RHR+
Sbjct: 114 H---SAEGGKHARVKEREHERRKRHRE 137


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 8   RELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDS 67
           ++  A K S+  +  R ++ K+R+    S +T   +     + ++ + G+SS  ++ + S
Sbjct: 44  KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103

Query: 68  KRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDE 116
            R+     +   +  +  GS P   R   R    R  +  K +P + DE
Sbjct: 104 SRSGSSSTSRSSSSSSSSGS-PSPSR---RRHDNRRRSRSKSKPPKRDE 148


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 8   RELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDS 67
           ++  A K S+  +  R ++ K+R+    S +T   +     + ++ + G+SS  ++ + S
Sbjct: 44  KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103

Query: 68  KRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDE 116
            R+     +   +  +  GS P   R   R    R  +  K +P + DE
Sbjct: 104 SRSGSSSTSRSSSSSSSSGS-PSPSR---RRHDNRRRSRSKSKPPKRDE 148


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 8   RELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDS 67
           ++  A K S+  +  R ++ K+R+    S +T   +     + ++ + G+SS  ++ + S
Sbjct: 44  KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103

Query: 68  KRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDE 116
            R+     +   +  +  GS P   R   R    R  +  K +P + DE
Sbjct: 104 SRSGSSSTSRSSSSSSSSGS-PSPSR---RRHDNRRRSRSKSKPPKRDE 148


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 8   RELNAEKASTNSETNRGESEKKRNLGELSRTTSEDNEVFGEADANQNNGTSSQDTAVTDS 67
           ++  A K S+  +  R ++ K+R+    S +T   +     + ++ + G+SS  ++ + S
Sbjct: 44  KDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSAS 103

Query: 68  KRTADPKNAWQDAHPADPGSRPHLIRLFSRDAPGREDNTFKDRPSESDE 116
            R+     +   +  +  GS P   R   R    R  +  K +P + DE
Sbjct: 104 SRSGSSSTSRSSSSSSSSGS-PSPSR---RRHDNRRRSRSKSKPPKRDE 148


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.306    0.123    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,872,965
Number of Sequences: 37866
Number of extensions: 355359
Number of successful extensions: 972
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 118
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.