Guide to the Human Genome
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Name: MBP Sequence: fasta or formatted (197aa) NCBI GI: 68509938
Description:

Golli-mbp isoform 2

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt prot [186aa] myelin basic protein isoform 2
alt prot [171aa] myelin basic protein isoform 3
alt prot [197aa] myelin basic protein isoform 1
alt prot [160aa] myelin basic protein isoform 4
alt prot [304aa] Golli-mbp isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         18           2
 C cysteine            0.0          0           0
 D aspartate           8.6         17           1
 E glutamate           8.1         16           2
 F phenylalanine       3.0          6           2
 G glycine             8.6         17           2
 H histidine           3.6          7           1
 I isoleucine          2.0          4           1
 K lysine              5.6         11           2
 L leucine             5.1         10           1
 M methionine          1.5          3           1
 N asparagine          5.6         11           2
 P proline             4.6          9           1
 Q glutamine           3.6          7           1
 R arginine            9.1         18           1
 S serine             11.7         23           2
 T threonine           7.1         14           2
 V valine              2.0          4           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Golli-mbp isoform 2 
MBP                   0.976   Golli-mbp isoform 1 
MBP                   0.273   myelin basic protein isoform 1 
MBP                   0.273   myelin basic protein isoform 2 
MBP                   0.270   myelin basic protein isoform 4 
MBP                   0.270   myelin basic protein isoform 3 
FLG                   0.051   filaggrin 
DSPP                  0.043   dentin sialophosphoprotein preproprotein 
KIAA1109              0.032   fragile site-associated protein 
RSF1                  0.027   remodeling and spacing factor 1 
PGBD1                 0.021   piggyBac transposable element derived 1 
PPM1G                 0.021   protein phosphatase 1G 
PPM1G                 0.021   protein phosphatase 1G 
TNRC6A                0.021   trinucleotide repeat containing 6A 
MAP9                  0.021   aster-associated protein 
AP3B1                 0.019   adaptor-related protein complex 3, beta 1 subunit [H...
ZFC3H1                0.019   proline/serine-rich coiled-coil 2 
CXorf67               0.016   hypothetical protein LOC340602 
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
HRNR                  0.016   hornerin 
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.016   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CENPF                 0.016   centromere protein F 
CDC2L2                0.013   cell division cycle 2-like 2 isoform 1 
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.013   PREDICTED: similar to ribonucleic acid binding prot...
RNPS1                 0.013   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.013   RNA-binding protein S1, serine-rich domain 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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