PGBD1 3867

Name: PGBD1	Sequence: fasta or formatted (809aa)		NCBI GI: 14210514
Description: piggyBac transposable element derived 1		Referenced in: DNA Transposon and Retrovirus-related Sequences
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 42 2 C cysteine 3.0 24 2 D aspartate 5.2 42 2 E glutamate 9.5 77 3 F phenylalanine 4.0 32 2 G glycine 5.2 42 2 H histidine 2.6 21 1 I isoleucine 4.2 34 2 K lysine 6.4 52 3 L leucine 9.5 77 3 M methionine 2.7 22 1 N asparagine 4.7 38 2 P proline 5.6 45 2 Q glutamine 5.3 43 2 R arginine 5.2 42 2 S serine 6.7 54 2 T threonine 4.6 37 3 V valine 6.2 50 2 W tryptophan 1.5 12 1 Y tyrosine 2.8 23 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 piggyBac transposable element derived 1 PGBD2 0.306 hypothetical protein LOC267002 isoform a PGBD3 0.187 hypothetical protein LOC267004 PGBD2 0.182 hypothetical protein LOC267002 isoform b ZKSCAN1 0.095 zinc finger protein 36 SCAND3 0.085 SCAN domain containing 3 ZNF192 0.084 zinc finger protein 192 ZNF167 0.076 zinc finger protein 167 isoform 1 ZSCAN12 0.076 zinc finger and SCAN domain containing 12 ZSCAN16 0.076 zinc finger and SCAN domain containing 16 ZSCAN23 0.076 zinc finger protein 390 ZNF323 0.076 zinc finger protein 323 ZNF323 0.076 zinc finger protein 323 ZNF323 0.076 zinc finger protein 323 ZNF323 0.076 zinc finger protein 323 ZKSCAN5 0.076 zinc finger with KRAB and SCAN domains 5 ZKSCAN5 0.076 zinc finger with KRAB and SCAN domains 5 ZNF263 0.074 zinc finger protein 263 ZNF397 0.071 zinc finger protein 397 isoform 1 ZNF397 0.071 zinc finger protein 397 isoform 2 ZNF197 0.071 zinc finger protein 197 isoform 1 ZNF167 0.070 zinc finger protein 167 isoform 2 ZNF165 0.068 zinc finger protein 165 ZNF197 0.067 zinc finger protein 197 isoform 2 ZNF24 0.067 zinc finger protein 24 ZKSCAN3 0.063 zinc finger with KRAB and SCAN domains 3 ZKSCAN4 0.063 zinc finger with KRAB and SCAN domains 4 ZNF202 0.063 zinc finger protein 202 ZNF397OS 0.063 zinc finger protein 397 opposite strand ZNF232 0.063 zinc finger protein 232 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.