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Search of human proteins with 68299799
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68299799 Purkinje cell protein 2 [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68299799 Purkinje cell protein 2 [Homo sapiens] 280 3e-76
gi|224548927 G-protein signaling modulator 1 (AGS3-like, C. eleg... 67 6e-12
gi|164519122 LGN protein [Homo sapiens] 65 2e-11
gi|224548929 G-protein signaling modulator 1 (AGS3-like, C. eleg... 49 1e-06
gi|188536004 zinc finger protein 469 [Homo sapiens] 33 0.094
gi|150170670 piccolo isoform 2 [Homo sapiens] 32 0.16
gi|150378539 piccolo isoform 1 [Homo sapiens] 32 0.16
gi|7657214 hormonally upregulated Neu-associated kinase [Homo sa... 32 0.16
gi|54860079 nadrin isoform 1 [Homo sapiens] 31 0.36
gi|54860105 nadrin isoform 2 [Homo sapiens] 31 0.36
gi|48717285 hypothetical protein LOC389763 [Homo sapiens] 30 0.46
gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 30 0.46
gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Ho... 30 0.46
gi|94536784 coiled-coil domain containing 51 [Homo sapiens] 30 0.46
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 30 0.61
gi|224809578 RAP1 GTPase activating protein isoform a [Homo sapi... 30 0.61
gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo ... 30 0.79
gi|164419758 bromodomain containing 2 [Homo sapiens] 29 1.0
gi|4826806 bromodomain containing 2 [Homo sapiens] 29 1.0
gi|156938257 leucine rich repeat containing 16B [Homo sapiens] 29 1.0
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 29 1.4
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 29 1.4
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 29 1.4
gi|40807477 retinoic acid induced 1 [Homo sapiens] 28 1.8
gi|166235167 zinc finger protein ZNF-U69274 [Homo sapiens] 28 1.8
gi|164698498 septin 9 isoform b [Homo sapiens] 28 2.3
gi|164698494 septin 9 isoform a [Homo sapiens] 28 2.3
gi|116256489 septin 9 isoform c [Homo sapiens] 28 2.3
gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Hom... 28 2.3
gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Hom... 28 2.3
>gi|68299799 Purkinje cell protein 2 [Homo sapiens]
Length = 136
Score = 280 bits (715), Expect = 3e-76
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MMDQEEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPT 60
MMDQEEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPT
Sbjct: 1 MMDQEEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPT 60
Query: 61 PEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTA 120
PEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTA
Sbjct: 61 PEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTA 120
Query: 121 LGFRRNSSPQPPTQAP 136
LGFRRNSSPQPPTQAP
Sbjct: 121 LGFRRNSSPQPPTQAP 136
>gi|224548927 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform a [Homo sapiens]
Length = 675
Score = 66.6 bits (161), Expect = 6e-12
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 21/114 (18%)
Query: 18 AGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPT-------------PEMD 64
A S D+E FF+LL+ Q RM+ QRC L G ++ + PT P+ +
Sbjct: 490 APSSDEECFFDLLTKFQSSRMDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTE 549
Query: 65 SLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDP 118
D++AS+Q RR+DDQR +V SLPG + S G + G PQ+P
Sbjct: 550 EFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGHLRGHG--------EPQEP 595
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 8 TEEGSGPCAEAGSPDQEG--FFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDS 65
T +G G P + G FFN+L Q R++ QRC P + P+ D
Sbjct: 579 THSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRC-----PPPDVLPRGPTMPDED- 632
Query: 66 LMDMLASTQGRRMDDQRVTVSSLP 89
++ Q +RMD+QRV ++ P
Sbjct: 633 FFSLIQRVQAKRMDEQRVDLAGGP 656
Score = 32.7 bits (73), Expect = 0.094
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 21 PDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDP 59
PD++ FF+L+ VQ RM+ QR L GP Q +P
Sbjct: 629 PDED-FFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEP 666
>gi|164519122 LGN protein [Homo sapiens]
Length = 684
Score = 65.1 bits (157), Expect = 2e-11
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 15/84 (17%)
Query: 24 EGFFNLLSHVQGDRMEGQRCSLQ---AGPGQTTKSQSDP------------TPEMDSLMD 68
EGFF+LLS Q +RM+ QRC LQ TT S + P +P D +D
Sbjct: 490 EGFFDLLSRFQSNRMDDQRCCLQEKNCHTASTTTSSTPPKMMLKTSSVPVVSPNTDEFLD 549
Query: 69 MLASTQGRRMDDQRVTVSSLPGFQ 92
+LAS+Q RR+DDQR + S+LPG +
Sbjct: 550 LLASSQSRRLDDQRASFSNLPGLR 573
Score = 45.4 bits (106), Expect = 1e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 24 EGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRV 83
E FF++L QG R++ QRC A P TTK PT + ++ +QG+RMD+QRV
Sbjct: 595 EDFFDILVKCQGSRLDDQRC---APPPATTKG---PTVPDEDFFSLILRSQGKRMDEQRV 648
Score = 38.5 bits (88), Expect = 0.002
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 20 SPDQEGFFNLLSHVQGDRMEGQRCSLQAGPG--QTTKSQS--------DPTPEMDSLMDM 69
SP+ + F +LL+ Q R++ QR S PG T SQS D + D+
Sbjct: 541 SPNTDEFLDLLASSQSRRLDDQRASFSNLPGLRLTQNSQSVLSHLMTNDNKEADEDFFDI 600
Query: 70 LASTQGRRMDDQR 82
L QG R+DDQR
Sbjct: 601 LVKCQGSRLDDQR 613
Score = 26.9 bits (58), Expect = 5.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 21 PDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTT 53
PD++ FF+L+ QG RM+ QR LQ + T
Sbjct: 627 PDED-FFSLILRSQGKRMDEQRVLLQRDQNRDT 658
>gi|224548929 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform c [Homo sapiens]
Length = 166
Score = 49.3 bits (116), Expect = 1e-06
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 21/94 (22%)
Query: 38 MEGQRCSLQAGPGQTTKSQSDPT-------------PEMDSLMDMLASTQGRRMDDQRVT 84
M+ QRC L G ++ + PT P+ + D++AS+Q RR+DDQR +
Sbjct: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
Query: 85 VSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDP 118
V SLPG + S G + G PQ+P
Sbjct: 61 VGSLPGLRITHSNAGHLRGHG--------EPQEP 86
Score = 40.0 bits (92), Expect = 6e-04
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 1 MMDQEEKTEEGSGPCAEA----------------GSPDQEGFFNLLSHVQGDRMEGQRCS 44
M DQ ++G AEA SP E FF+L++ Q R++ QR S
Sbjct: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
Query: 45 LQAGPGQT--------TKSQSDPTPEMDSLMDMLASTQGRRMDDQR 82
+ + PG + +P D +ML Q R+DDQR
Sbjct: 61 VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQR 106
Score = 39.3 bits (90), Expect = 0.001
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 8 TEEGSGPCAEAGSPDQEG--FFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDS 65
T +G G P + G FFN+L Q R++ QRC P + P+ D
Sbjct: 70 THSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRC-----PPPDVLPRGPTMPDED- 123
Query: 66 LMDMLASTQGRRMDDQRVTVSSLP 89
++ Q +RMD+QRV ++ P
Sbjct: 124 FFSLIQRVQAKRMDEQRVDLAGGP 147
Score = 32.7 bits (73), Expect = 0.094
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 21 PDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDP 59
PD++ FF+L+ VQ RM+ QR L GP Q +P
Sbjct: 120 PDED-FFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEP 157
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 32.7 bits (73), Expect = 0.094
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 35 GDRMEGQRCSLQAG---PGQTTKSQSDPT-PEMDSLMDMLASTQGRRMDDQRVTVSSLPG 90
G+R G G P Q S P+ P ++ +T+G R + LP
Sbjct: 3 GERPRGAPPPTMTGDLQPRQVASSPGHPSQPPLEDNTPATRTTKGAREAGGQAQAMELPE 62
Query: 91 FQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQAP 136
QP ++DG K P L Q P++ +R S PP ++P
Sbjct: 63 AQPRQARDGELK-------PPSLRGQAPSSTPGKRGSPQTPPGRSP 101
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.0 bits (71), Expect = 0.16
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 46 QAGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAG 105
QAGPG+T+ Q+ PT L + Q+ + P QP +K +Q+
Sbjct: 453 QAGPGKTSAQQTGPTKPPSQL------PGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGS 506
Query: 106 TLSPQPLLTPQDPTALGFRRNSSPQPPTQAP 136
T P P P+ ++ S +PP+Q P
Sbjct: 507 TKPPPQQPGPAKPSP---QQPGSTKPPSQQP 534
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.0 bits (71), Expect = 0.16
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 46 QAGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAG 105
QAGPG+T+ Q+ PT L + Q+ + P QP +K +Q+
Sbjct: 453 QAGPGKTSAQQTGPTKPPSQL------PGPAKPPPQQPGPAKPPPQQPGSAKPPSQQPGS 506
Query: 106 TLSPQPLLTPQDPTALGFRRNSSPQPPTQAP 136
T P P P+ ++ S +PP+Q P
Sbjct: 507 TKPPPQQPGPAKPSP---QQPGSTKPPSQQP 534
>gi|7657214 hormonally upregulated Neu-associated kinase [Homo
sapiens]
Length = 714
Score = 32.0 bits (71), Expect = 0.16
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 46 QAGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAG 105
Q GPG T P E ++DM+ S + DD +S ++ + S +R
Sbjct: 539 QPGPGST----GIPHKEDPLMLDMVRSFESVDRDDHVEVLSPSHHYRILNSPVSLARRNS 594
Query: 106 ---TLSP-------QPLLTPQDPTALGFRRNSSPQPPTQ 134
TLSP PL TP PT + F PP +
Sbjct: 595 SERTLSPGLPSGSMSPLHTPLHPTLVSFAHEDKNSPPKE 633
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 30.8 bits (68), Expect = 0.36
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 89 PGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQ 134
PG P G G Q +GT P L+P+ PT SP PPTQ
Sbjct: 643 PGNPPPGHP-GGQSSSGTSQHPPSLSPKPPT-------RSPSPPTQ 680
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 30.8 bits (68), Expect = 0.36
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 89 PGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQ 134
PG P G G Q +GT P L+P+ PT SP PPTQ
Sbjct: 565 PGNPPPGHP-GGQSSSGTSQHPPSLSPKPPT-------RSPSPPTQ 602
>gi|48717285 hypothetical protein LOC389763 [Homo sapiens]
Length = 1576
Score = 30.4 bits (67), Expect = 0.46
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 89 PGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPP 132
P P+ S A + + TL+ P TP + L R +SP PP
Sbjct: 154 PSVSPLASSASATESSFTLASTPSATPPEDLILSPRPKASPPPP 197
>gi|12751473 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 30.4 bits (67), Expect = 0.46
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 9 EEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEM 63
+EG G AEAG +E ++++ +MEG R L+ G G + + P P +
Sbjct: 140 KEGRGAPAEAGKEQKE------TNIESMKMEGSRGRLRGGLGWESSLRQRPMPRL 188
>gi|28559069 DNA cytosine methyltransferase 3 alpha isoform a [Homo
sapiens]
Length = 912
Score = 30.4 bits (67), Expect = 0.46
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 9 EEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEM 63
+EG G AEAG +E ++++ +MEG R L+ G G + + P P +
Sbjct: 140 KEGRGAPAEAGKEQKE------TNIESMKMEGSRGRLRGGLGWESSLRQRPMPRL 188
>gi|94536784 coiled-coil domain containing 51 [Homo sapiens]
Length = 411
Score = 30.4 bits (67), Expect = 0.46
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 47 AGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGT 106
AGPGQ + SQ+ P D +D+L++ ++ R S L G + DG +K
Sbjct: 276 AGPGQDSGSQAGSPPTRDRDVDVLSAALKEQLSHSRQVHSCLEGLRE--QLDGLEKTCSQ 333
Query: 107 LS 108
++
Sbjct: 334 MA 335
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 30.0 bits (66), Expect = 0.61
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 40 GQRCSLQAGPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVS-SLPGFQPVGSKD 98
G +Q GPG+ ++S SDPT S+ +S + D +S ++PG +
Sbjct: 382 GMGSQVQPGPGRVSRSTSDPTLCTSSMAGDASSHRPSCSQDLEAGLSEAVPGSASMSRSA 441
Query: 99 GAQKRAGTL---SPQPLLTPQDPTALGFRRNSSPQP 131
A RA P T Q PT F S +P
Sbjct: 442 TAACRAQLSPAGDPDTWKTDQRPTPEPFPATSKERP 477
>gi|224809578 RAP1 GTPase activating protein isoform a [Homo
sapiens]
Length = 727
Score = 30.0 bits (66), Expect = 0.61
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 21 PDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDSLMD--------MLAS 72
P F ++ +QG RM+ QRCS P T+ P P + ++ +L
Sbjct: 57 PKNTDLFEMIEKMQGSRMDEQRCSFP--PPLKTEEDYIPYPSVHEVLGREGPFPLILLPQ 114
Query: 73 TQGRRMDDQRVTVSSLPGFQPVGS 96
G ++ ++S+P +P+ S
Sbjct: 115 FGGYWIEGTNHEITSIPETEPLQS 138
>gi|50513245 chromatin assembly factor 1, subunit A (p150) [Homo
sapiens]
Length = 956
Score = 29.6 bits (65), Expect = 0.79
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 34/130 (26%)
Query: 35 GDRMEGQRCSLQAGPGQTTKSQSDPTPEMDS-----------------LMDML------- 70
G R + Q CS ++ P T+ + P E DS L D+L
Sbjct: 194 GRRGDSQECSPRSCPELTSGPRMCPRKEQDSWSEAGGILFKGKVPMVVLQDILAVRPPQI 253
Query: 71 ----ASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRN 126
A+ QG+ M + + S P +D + SP +P+ P A + +
Sbjct: 254 KSLPATPQGKNMTPESEVLESFP------EEDSVLSHSSLSSPSSTSSPEGPPAPPKQHS 307
Query: 127 SSPQPPTQAP 136
S+ PT P
Sbjct: 308 STSPFPTSTP 317
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 29.3 bits (64), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 83 VTVSSLPGFQPVGSKDGAQKRAGTLSPQP--LLTPQDPTA 120
+ V++ P QP+ K G +++A T +P P +L P P +
Sbjct: 262 LAVTAAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSPAS 301
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 29.3 bits (64), Expect = 1.0
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 83 VTVSSLPGFQPVGSKDGAQKRAGTLSPQP--LLTPQDPTA 120
+ V++ P QP+ K G +++A T +P P +L P P +
Sbjct: 262 LAVTAAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSPAS 301
>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
Length = 1372
Score = 29.3 bits (64), Expect = 1.0
Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 17 EAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDSLMDMLASTQGR 76
E PDQEG + +R S AGPG + K P S M +
Sbjct: 1175 EGPGPDQEG--------STQAWQKRRSSDDAGPG-SWKPPPPPQSTKPSFSAMRRAEATW 1225
Query: 77 RMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQAP 136
+ ++ S P S+DG +++ GTL P+ L RN+ Q P AP
Sbjct: 1226 HIAEESAPNHSCQSPSPA-SQDGEEEKEGTLFPERTLP---------ARNAKLQDPALAP 1275
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 28.9 bits (63), Expect = 1.4
Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
Query: 4 QEEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEM 63
Q +KT E + P + +GS + + + ME Q+ +L Q SQSD T
Sbjct: 683 QVQKTAEPAQPSSASGSGNSDDAIRSILQQARREMEAQQAALDPALKQAPLSQSDIT--- 739
Query: 64 DSLMDMLASTQGRRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLS-PQP 111
L L ST TVSS P K A AG + P P
Sbjct: 740 -ILTPKLLST------SPMPTVSSYPPLAISLKKPSAAPEAGASALPNP 781
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 28.9 bits (63), Expect = 1.4
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 16 AEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDSLMDMLASTQG 75
++ G+P + L++ V + G+ S+ PGQT + + T ++ + QG
Sbjct: 690 SDGGTPGRMPPQPLVNAVPVQNVSGETVSVTPVPGQTLVTMATATVTANNGQTVTIPVQG 749
Query: 76 RRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPL 112
++ +T F PV G Q +A T S QPL
Sbjct: 750 IANENGGIT------FFPVQVNVGGQAQAVTGSIQPL 780
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 28.9 bits (63), Expect = 1.4
Identities = 36/139 (25%), Positives = 47/139 (33%), Gaps = 10/139 (7%)
Query: 5 EEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQS--DPTPE 62
+++ EEG S D S M Q S A T S + T E
Sbjct: 2353 KDEDEEGQDDSQNEDSMDAMEILTPTSSSCSTPMPSQAYSAPAPSANNTASSAFLQLTAE 2412
Query: 63 MDSLMDMLASTQGRRMDDQRVTVSSLPGFQP--VGSKDGAQKRAGTLSPQP---LLTPQD 117
+ L + T+ D++ ++ P QP K G K QP TPQ
Sbjct: 2413 AEELATFNSKTEA---GDEKPKLAEAPSAQPNQTQEKQGQPKPELQQQEQPEQKTNTPQQ 2469
Query: 118 PTALGFRRNSSPQPPTQAP 136
S PQPP QAP
Sbjct: 2470 KLPQLVSLPSLPQPPPQAP 2488
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 28.5 bits (62), Expect = 1.8
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 48 GPGQTTKSQSDPTPEMDSLMDMLASTQGRRMDDQRVTVSSLP-----GFQPVGSKDGAQK 102
G G + S+ P M + + A ++ R +T + P G Q K G K
Sbjct: 1040 GAGAPGRGASEGLPRMCT-RSLTALSEPRTPGPPGLTTTPAPPDKLGGKQRAAFKSG--K 1096
Query: 103 RAGTLSPQPLLTPQDPTALGFRRNSSP 129
R G SP+ +P +P AL +SSP
Sbjct: 1097 RVGKPSPKAASSPSNPAALPVASDSSP 1123
>gi|166235167 zinc finger protein ZNF-U69274 [Homo sapiens]
Length = 1053
Score = 28.5 bits (62), Expect = 1.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 3 DQEEKTEEGSGPCAEAGSPDQEGFFNLLSHVQGDRMEGQRCSL 45
D +E TEE S C E G Q + ++ ++ +R +C L
Sbjct: 559 DAKENTEEASHKCGECGMVFQRRYALIMHKLKHERARDYKCPL 601
>gi|164698498 septin 9 isoform b [Homo sapiens]
Length = 579
Score = 28.1 bits (61), Expect = 2.3
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 76 RRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQ 134
RRM+ S +P + D A KR P+P P P+ NS P P +Q
Sbjct: 156 RRMEPP---ASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQ 211
>gi|164698494 septin 9 isoform a [Homo sapiens]
Length = 586
Score = 28.1 bits (61), Expect = 2.3
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 76 RRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQ 134
RRM+ S +P + D A KR P+P P P+ NS P P +Q
Sbjct: 163 RRMEPP---ASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQ 218
>gi|116256489 septin 9 isoform c [Homo sapiens]
Length = 568
Score = 28.1 bits (61), Expect = 2.3
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 76 RRMDDQRVTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPTQ 134
RRM+ S +P + D A KR P+P P P+ NS P P +Q
Sbjct: 145 RRMEPP---ASKVPEVPTAPATDAAPKRVEIQMPKPAEAPTAPSPAQTLENSEPAPVSQ 200
>gi|50845418 WNK lysine deficient protein kinase 3 isoform 1 [Homo
sapiens]
Length = 1800
Score = 28.1 bits (61), Expect = 2.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 83 VTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPT 133
+TV +P +PV GA+++A L P + + A SSP P+
Sbjct: 670 LTVQKVPQIKPVSQPVGAEQQAALLKPDLVRSLNQDVATTKENVSSPDNPS 720
>gi|50845416 WNK lysine deficient protein kinase 3 isoform 2 [Homo
sapiens]
Length = 1743
Score = 28.1 bits (61), Expect = 2.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 83 VTVSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDPTALGFRRNSSPQPPT 133
+TV +P +PV GA+++A L P + + A SSP P+
Sbjct: 670 LTVQKVPQIKPVSQPVGAEQQAALLKPDLVRSLNQDVATTKENVSSPDNPS 720
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,859,716
Number of Sequences: 37866
Number of extensions: 357300
Number of successful extensions: 1213
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 99
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.