Guide to the Human Genome
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Name: GPSM1 Sequence: fasta or formatted (166aa) NCBI GI: 224548929
Description:

G-protein signaling modulator 1 (AGS3-like, C. elegans) isoform c

Referenced in:

G Proteins
Tetratricopeptide Domains

Other entries for this name:
alt prot [457aa] G-protein signaling modulator 1 (AGS3-like, C. elegans) isoform b
alt prot [675aa] G-protein signaling modulator 1 (AGS3-like, C. elegans) isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         15           2
 C cysteine            1.8          3           1
 D aspartate          10.2         17           2
 E glutamate           6.0         10           2
 F phenylalanine       3.6          6           2
 G glycine             9.0         15           2
 H histidine           1.8          3           1
 I isoleucine          3.6          6           1
 K lysine              1.2          2           1
 L leucine             6.6         11           1
 M methionine          3.0          5           1
 N asparagine          1.2          2           1
 P proline            10.8         18           3
 Q glutamine          10.2         17           3
 R arginine            7.8         13           2
 S serine              7.2         12           2
 T threonine           3.6          6           1
 V valine              2.4          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   G-protein signaling modulator 1 (AGS3-like, C. eleg... 
GPSM1                 1.000   G-protein signaling modulator 1 (AGS3-like, C. eleg...
GPSM2                 0.377   LGN protein 
GPSM3                 0.075   G-protein signaling modulator 3 (AGS3-like, C. elega...
PCP2                  0.075   Purkinje cell protein 2 
RGS12                 0.022   regulator of G-protein signalling 12 isoform 2 
RGS12                 0.022   regulator of G-protein signalling 12 isoform 1 [Homo...
RGS12                 0.022   regulator of G-protein signalling 12 isoform 3 [Homo...
RAP1GAP               0.022   RAP1 GTPase activating protein isoform a 
MYLK2                 0.022   skeletal myosin light chain kinase 
VASP                  0.019   vasodilator-stimulated phosphoprotein 
LOC442366             0.016   PREDICTED: hypothetical protein 
LOC442366             0.016   PREDICTED: hypothetical protein 
GARNL4                0.016   GTPase activating Rap/RanGAP domain-like 4 isoform ...
PER1                  0.013   period 1 
VCL                   0.013   vinculin isoform VCL 
VCL                   0.013   vinculin isoform meta-VCL 
SMARCAL1              0.013   SWI/SNF-related matrix-associated actin-dependent re...
SMARCAL1              0.013   SWI/SNF-related matrix-associated actin-dependent r...
PDPN                  0.009   lung type-I cell membrane-associated glycoprotein is...
PDPN                  0.009   lung type-I cell membrane-associated glycoprotein is...
TAF7L                 0.009   TATA box binding protein-associated factor, RNA poly...
C15orf2               0.009   hypothetical protein LOC23742 
EHMT2                 0.006   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.006   euchromatic histone-lysine N-methyltransferase 2 is...
KBTBD11               0.006   kelch repeat and BTB (POZ) domain containing 11 [Homo...
MUC16                 0.006   mucin 16 
RCC1                  0.006   regulator of chromosome condensation 1 isoform a [H...
LOC100294439          0.006   PREDICTED: similar to Os05g0242100 
RAP1GAP               0.006   RAP1 GTPase activating protein isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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