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Search of human proteins with 67003566
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|67003566 F-box protein 48 [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67003566 F-box protein 48 [Homo sapiens] 323 3e-89
gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens] 44 4e-05
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 42 3e-04
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 42 3e-04
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 42 3e-04
gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [H... 38 0.004
gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [H... 38 0.004
gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [H... 38 0.004
gi|48928050 F-box and WD repeat domain containing 11 isoform C [... 38 0.004
gi|48928048 F-box and WD repeat domain containing 11 isoform A [... 38 0.004
gi|48928046 F-box and WD repeat domain containing 11 isoform B [... 38 0.004
gi|27312027 F-box only protein 16 [Homo sapiens] 38 0.004
gi|48928044 F-box only protein 8 [Homo sapiens] 37 0.007
gi|124244083 F-box protein 10 [Homo sapiens] 36 0.012
gi|4502477 beta-transducin repeat containing protein isoform 2 [... 36 0.015
gi|16117783 beta-transducin repeat containing protein isoform 1 ... 36 0.015
gi|27734755 F-box and leucine-rich repeat protein 20 [Homo sapiens] 35 0.026
gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [H... 35 0.026
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H... 35 0.026
gi|16306582 F-box and leucine-rich repeat protein 2 [Homo sapiens] 34 0.044
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 33 0.075
gi|6912546 F-box only protein 9 isoform 1 [Homo sapiens] 33 0.075
gi|53692184 F-box only protein 9 isoform 3 [Homo sapiens] 33 0.075
gi|15812201 F-box only protein 9 isoform 2 [Homo sapiens] 33 0.075
gi|118150678 epithelial cell transforming sequence 2 oncogene-li... 32 0.17
gi|148922963 F-box and leucine-rich repeat protein 21 [Homo sapi... 32 0.29
gi|23397500 F-box protein 39 [Homo sapiens] 32 0.29
gi|74229029 F-box only protein 7 isoform 2 [Homo sapiens] 31 0.37
gi|74229027 F-box only protein 7 isoform 1 [Homo sapiens] 31 0.37
gi|11545739 F-box and WD repeat domain containing 4 [Homo sapiens] 30 0.64
>gi|67003566 F-box protein 48 [Homo sapiens]
Length = 155
Score = 323 bits (829), Expect = 3e-89
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MHKNSKRNNNLRVSHTEANSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASL 60
MHKNSKRNNNLRVSHTEANSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASL
Sbjct: 1 MHKNSKRNNNLRVSHTEANSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASL 60
Query: 61 TCRSWNDTIRNSDSLWKPHCMTVRAVCRREIDDDLESGYSWRVILLRNYQKSKVKHEWLS 120
TCRSWNDTIRNSDSLWKPHCMTVRAVCRREIDDDLESGYSWRVILLRNYQKSKVKHEWLS
Sbjct: 61 TCRSWNDTIRNSDSLWKPHCMTVRAVCRREIDDDLESGYSWRVILLRNYQKSKVKHEWLS 120
Query: 121 GRYSNICSPISLPEKIMYPMDADTWGEILEAELER 155
GRYSNICSPISLPEKIMYPMDADTWGEILEAELER
Sbjct: 121 GRYSNICSPISLPEKIMYPMDADTWGEILEAELER 155
>gi|118402584 F-box and WD repeat domain containing 2 [Homo sapiens]
Length = 454
Score = 44.3 bits (103), Expect = 4e-05
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 31 QNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAVCRRE 90
+ +F +LLP E++F + LD ++L L + WN I +W+ C + +
Sbjct: 53 KRDFLKLLPLELSFYLLKWLDPQTLLTCCLVSKQWNKVISACTEVWQTACKNL----GWQ 108
Query: 91 IDDDLESGYSWRVILLRNYQKSK 113
IDD ++ W+ + L+ + K
Sbjct: 109 IDDSVQDALHWKKVYLKAILRMK 131
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 41.6 bits (96), Expect = 3e-04
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 36 ELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAVCRREI---- 91
E LP E+ KIFS L + LCRA+ C+ +++ + N LWK M V R +
Sbjct: 73 EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE-LANDPILWKRLYMEVFEYTRPMMHPEP 131
Query: 92 -------DDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADT 144
++ E W+ + Y+ + VK + YSN + Y D
Sbjct: 132 GKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDA 191
Query: 145 WGEILEAELE 154
G + EA +
Sbjct: 192 LGGVQEAHFD 201
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 41.6 bits (96), Expect = 3e-04
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 36 ELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAVCRREI---- 91
E LP E+ KIFS L + LCRA+ C+ +++ + N LWK M V R +
Sbjct: 73 EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE-LANDPILWKRLYMEVFEYTRPMMHPEP 131
Query: 92 -------DDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADT 144
++ E W+ + Y+ + VK + YSN + Y D
Sbjct: 132 GKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDA 191
Query: 145 WGEILEAELE 154
G + EA +
Sbjct: 192 LGGVQEAHFD 201
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 41.6 bits (96), Expect = 3e-04
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 12/130 (9%)
Query: 36 ELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAVCRREI---- 91
E LP E+ KIFS L + LCRA+ C+ +++ + N LWK M V R +
Sbjct: 73 EKLPDEVVLKIFSYLLEQDLCRAACVCKRFSE-LANDPILWKRLYMEVFEYTRPMMHPEP 131
Query: 92 -------DDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADT 144
++ E W+ + Y+ + VK + YSN + Y D
Sbjct: 132 GKFYQINPEEYEHPNPWKESFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDA 191
Query: 145 WGEILEAELE 154
G + EA +
Sbjct: 192 LGGVQEAHFD 201
>gi|61743926 F-box and WD repeat domain containing 7 isoform 3 [Homo
sapiens]
Length = 589
Score = 37.7 bits (86), Expect = 0.004
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 31 QNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHC 80
Q +F LLP E+ + S L+ + L +A+ TCR W + + LW+ C
Sbjct: 159 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR-ILAEDNLLWREKC 207
>gi|16117781 F-box and WD repeat domain containing 7 isoform 1 [Homo
sapiens]
Length = 707
Score = 37.7 bits (86), Expect = 0.004
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 31 QNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHC 80
Q +F LLP E+ + S L+ + L +A+ TCR W + + LW+ C
Sbjct: 277 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR-ILAEDNLLWREKC 325
>gi|16117779 F-box and WD repeat domain containing 7 isoform 2 [Homo
sapiens]
Length = 627
Score = 37.7 bits (86), Expect = 0.004
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 31 QNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHC 80
Q +F LLP E+ + S L+ + L +A+ TCR W + + LW+ C
Sbjct: 197 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWR-ILAEDNLLWREKC 245
>gi|48928050 F-box and WD repeat domain containing 11 isoform C
[Homo sapiens]
Length = 542
Score = 37.7 bits (86), Expect = 0.004
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 31 QNNFFELLPAE----ITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAV 86
Q +F LP + I I S LD RSLC A L C+ W I + LWK + R V
Sbjct: 116 QRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVI-SEGMLWKK--LIERMV 172
Query: 87 CRREIDDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPE 134
+ L W L +N + + Y I I E
Sbjct: 173 RTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIE 220
>gi|48928048 F-box and WD repeat domain containing 11 isoform A
[Homo sapiens]
Length = 508
Score = 37.7 bits (86), Expect = 0.004
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 31 QNNFFELLPAE----ITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAV 86
Q +F LP + I I S LD RSLC A L C+ W I + LWK + R V
Sbjct: 82 QRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVI-SEGMLWKK--LIERMV 138
Query: 87 CRREIDDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPE 134
+ L W L +N + + Y I I E
Sbjct: 139 RTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIE 186
>gi|48928046 F-box and WD repeat domain containing 11 isoform B
[Homo sapiens]
Length = 529
Score = 37.7 bits (86), Expect = 0.004
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 31 QNNFFELLPAE----ITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAV 86
Q +F LP + I I S LD RSLC A L C+ W I + LWK + R V
Sbjct: 103 QRDFITALPEQGLDHIAENILSYLDARSLCAAELVCKEWQRVI-SEGMLWKK--LIERMV 159
Query: 87 CRREIDDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPE 134
+ L W L +N + + Y I I E
Sbjct: 160 RTDPLWKGLSERRGWDQYLFKNRPTDGPPNSFYRSLYPKIIQDIETIE 207
>gi|27312027 F-box only protein 16 [Homo sapiens]
Length = 292
Score = 37.7 bits (86), Expect = 0.004
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 33 NFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCM 81
+F LP ++ IFS LD RSLCR + C W + + D LW C+
Sbjct: 87 DFTTKLPRVLSLYIFSFLDPRSLCRCAQVCWHWKN-LAELDQLWMLKCL 134
>gi|48928044 F-box only protein 8 [Homo sapiens]
Length = 319
Score = 37.0 bits (84), Expect = 0.007
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 27 KNESQNNFF--ELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVR 84
K++ Q F E+LP E++F I S L+ LC AS W D + N + LW+ C +
Sbjct: 61 KSKEQEGFINLEMLPPELSFTILSYLNATDLCLASCV---WQD-LANDELLWQGLCKSTW 116
Query: 85 AVC 87
C
Sbjct: 117 GHC 119
>gi|124244083 F-box protein 10 [Homo sapiens]
Length = 956
Score = 36.2 bits (82), Expect = 0.012
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 38 LPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSL-WKPHCMTVRAVCRR---EIDD 93
LP E+ I + L + L R SL CR+W + I + DS W+ C+ CR
Sbjct: 6 LPLELWRMILAYLHLPDLGRCSLVCRAWYELILSLDSTRWRQLCLGC-TECRHPNWPNQP 64
Query: 94 DLESGYSWRVILLRNYQKSKVKHEWLSGRYSNIC 127
D+E SWR ++Y SK + S+IC
Sbjct: 65 DVEP-ESWREAFKQHYLASKTWTKNALDLESSIC 97
>gi|4502477 beta-transducin repeat containing protein isoform 2
[Homo sapiens]
Length = 569
Score = 35.8 bits (81), Expect = 0.015
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 31 QNNFFELLPAE----ITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
Q +F LPA I I S LD +SLC A L C+ W + + LWK
Sbjct: 141 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWY-RVTSDGMLWK 190
>gi|16117783 beta-transducin repeat containing protein isoform 1
[Homo sapiens]
Length = 605
Score = 35.8 bits (81), Expect = 0.015
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 31 QNNFFELLPAE----ITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
Q +F LPA I I S LD +SLC A L C+ W + + LWK
Sbjct: 177 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWY-RVTSDGMLWK 226
>gi|27734755 F-box and leucine-rich repeat protein 20 [Homo
sapiens]
Length = 436
Score = 35.0 bits (79), Expect = 0.026
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 38 LPAEITFKIFSQLDIRSLCRASLTCRSWN 66
LP E+ +IFS LD+ +LCR + R+WN
Sbjct: 28 LPKELLLRIFSFLDVVTLCRCAQVSRAWN 56
>gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [Homo
sapiens]
Length = 565
Score = 35.0 bits (79), Expect = 0.026
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 22 DAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
D E E +E L P E+ IFS L+ + LCR S W+ + + SLWK
Sbjct: 67 DKEAEVSEHSTGITHL-PPEVMLSIFSYLNPQELCRCSQVSMKWSQ-LTKTGSLWK 120
>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
sapiens]
Length = 691
Score = 35.0 bits (79), Expect = 0.026
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 22 DAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
D E E +E L P E+ IFS L+ + LCR S W+ + + SLWK
Sbjct: 193 DKEAEVSEHSTGITHL-PPEVMLSIFSYLNPQELCRCSQVSMKWSQ-LTKTGSLWK 246
>gi|16306582 F-box and leucine-rich repeat protein 2 [Homo
sapiens]
Length = 423
Score = 34.3 bits (77), Expect = 0.044
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 28 NESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWN 66
N + + LP E+ +IFS LDI +LCR + ++WN
Sbjct: 5 NNDEGLINKKLPKELLLRIFSFLDIVTLCRCAQISKAWN 43
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 33.5 bits (75), Expect = 0.075
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 11/96 (11%)
Query: 19 NSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKP 78
+ + E+++ + +L P E+ I S L +R L TCR +++ + + + +W
Sbjct: 23 SELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLVALGQTCRYFHE-VCDGEGVW-- 79
Query: 79 HCMTVRAVCRR---EIDDDLESGYSWRVILLRNYQK 111
R +CRR + D W+ + NY K
Sbjct: 80 -----RRICRRLSPRLQDQGSGVRPWKRAAILNYTK 110
>gi|6912546 F-box only protein 9 isoform 1 [Homo sapiens]
Length = 447
Score = 33.5 bits (75), Expect = 0.075
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 29 ESQNNFFELLPAEITFKIF-----SQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTV 83
ES +LP E+ IF S LD+RSL + SL CR + R+ + +W+ C+ V
Sbjct: 182 ESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPE-IWRLACLKV 240
>gi|53692184 F-box only protein 9 isoform 3 [Homo sapiens]
Length = 403
Score = 33.5 bits (75), Expect = 0.075
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 29 ESQNNFFELLPAEITFKIF-----SQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTV 83
ES +LP E+ IF S LD+RSL + SL CR + R+ + +W+ C+ V
Sbjct: 138 ESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPE-IWRLACLKV 196
>gi|15812201 F-box only protein 9 isoform 2 [Homo sapiens]
Length = 437
Score = 33.5 bits (75), Expect = 0.075
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 29 ESQNNFFELLPAEITFKIF-----SQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTV 83
ES +LP E+ IF S LD+RSL + SL CR + R+ + +W+ C+ V
Sbjct: 172 ESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPE-IWRLACLKV 230
>gi|118150678 epithelial cell transforming sequence 2 oncogene-like
[Homo sapiens]
Length = 904
Score = 32.3 bits (72), Expect = 0.17
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 33 NFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCM 81
+F +LP I+ IFS L + LC A+ W + D LW P C+
Sbjct: 76 DFSTVLPRFISLYIFSFLSPKDLCAAAQVSWPWK-FLTEQDCLWMPKCV 123
>gi|148922963 F-box and leucine-rich repeat protein 21 [Homo
sapiens]
Length = 434
Score = 31.6 bits (70), Expect = 0.29
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 38 LPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
LP + +IF L + AS CR WN+ SD LW+
Sbjct: 45 LPHHVVLQIFQYLPLLDRACASSVCRRWNEVFHISD-LWR 83
>gi|23397500 F-box protein 39 [Homo sapiens]
Length = 442
Score = 31.6 bits (70), Expect = 0.29
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 21 VDAEKEKNESQN-NFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPH 79
+D E E + Q+ + + LP ++F L R RA+L CR WN + +++ LW+
Sbjct: 1 MDEESELIQPQDQSCWAFLPDLCLCRVFWWLGDRDRSRAALVCRKWNQMMYSAE-LWRYR 59
Query: 80 CMTVRAVCRREIDDDLES 97
+T R ++ES
Sbjct: 60 TITFSGRPSRVHASEVES 77
>gi|74229029 F-box only protein 7 isoform 2 [Homo sapiens]
Length = 443
Score = 31.2 bits (69), Expect = 0.37
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 37 LLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
+LP E+ +IF LD+RS+ S CR T N LW+
Sbjct: 255 VLPLELKLRIFRLLDVRSVLSLSAVCRDL-FTASNDPLLWR 294
>gi|74229027 F-box only protein 7 isoform 1 [Homo sapiens]
Length = 522
Score = 31.2 bits (69), Expect = 0.37
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 37 LLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
+LP E+ +IF LD+RS+ S CR T N LW+
Sbjct: 334 VLPLELKLRIFRLLDVRSVLSLSAVCRDL-FTASNDPLLWR 373
>gi|11545739 F-box and WD repeat domain containing 4 [Homo
sapiens]
Length = 412
Score = 30.4 bits (67), Expect = 0.64
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 38 LPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWK 77
LP E+ I S LD+R+L R + CR W + D LW+
Sbjct: 31 LPEELLLLICSYLDMRALGRLAQVCR-WLRRFTSCDLLWR 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,897,631
Number of Sequences: 37866
Number of extensions: 228112
Number of successful extensions: 561
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 65
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.