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Search of human proteins with 66882524
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66882524 farnesyltransferase, CAAX box, alpha isoform b
[Homo sapiens]
(288 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo... 595 e-170
gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo ... 585 e-167
gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo... 511 e-145
gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens] 80 3e-15
gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens] 80 3e-15
gi|153792604 protein prenyltransferase alpha subunit repeat cont... 46 4e-05
gi|4503165 cullin 3 [Homo sapiens] 33 0.29
gi|167466177 cell division cycle protein 27 isoform 1 [Homo sapi... 33 0.38
gi|167466175 cell division cycle protein 27 isoform 2 [Homo sapi... 33 0.38
gi|124256489 crooked neck-like 1 protein [Homo sapiens] 32 0.65
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 32 0.65
gi|60685231 tetratricopeptide repeat domain 7B [Homo sapiens] 32 0.65
gi|118498362 kinectin 1 isoform b [Homo sapiens] 32 0.84
gi|118498356 kinectin 1 isoform a [Homo sapiens] 32 0.84
gi|33620775 kinectin 1 isoform a [Homo sapiens] 32 0.84
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 31 1.1
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 31 1.4
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 30 1.9
gi|118498368 kinectin 1 isoform c [Homo sapiens] 30 2.5
gi|5729840 tubulin, gamma complex associated protein 2 [Homo sap... 29 4.2
gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens] 29 5.5
gi|55770834 centromere protein F [Homo sapiens] 29 5.5
gi|12597661 mitochondrial ribosomal protein L44 [Homo sapiens] 29 5.5
gi|148727288 low density lipoprotein receptor-related protein 6 ... 28 7.2
gi|27436951 lamin B2 [Homo sapiens] 28 7.2
gi|31542634 filamin A interacting protein 1 [Homo sapiens] 28 7.2
gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Ho... 28 7.2
gi|160707985 NMDA receptor regulated 1-like protein isoform 3 [H... 28 7.2
gi|33356130 NMDA receptor regulated 1-like protein isoform 2 [Ho... 28 7.2
gi|13562090 apolipoprotein L2 [Homo sapiens] 28 9.3
>gi|66882524 farnesyltransferase, CAAX box, alpha isoform b [Homo
sapiens]
Length = 288
Score = 595 bits (1534), Expect = e-170
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MSCTVRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE 60
MSCTVRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE
Sbjct: 1 MSCTVRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE 60
Query: 61 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 120
MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ
Sbjct: 61 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 120
Query: 121 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 180
EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP
Sbjct: 121 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 180
Query: 181 HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 240
HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE
Sbjct: 181 HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 240
Query: 241 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ 288
DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ
Sbjct: 241 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ 288
>gi|4503771 farnesyltransferase, CAAX box, alpha isoform a [Homo
sapiens]
Length = 379
Score = 585 bits (1507), Expect = e-167
Identities = 283/283 (100%), Positives = 283/283 (100%)
Query: 6 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 65
RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT
Sbjct: 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 156
Query: 66 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 125
AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW
Sbjct: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
Query: 126 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 185
DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA
Sbjct: 217 DNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276
Query: 186 WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 245
WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK
Sbjct: 277 WNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336
Query: 246 ALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ 288
ALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ
Sbjct: 337 ALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQ 379
>gi|66882532 farnesyltransferase, CAAX box, alpha isoform c [Homo
sapiens]
Length = 312
Score = 511 bits (1317), Expect = e-145
Identities = 247/257 (96%), Positives = 253/257 (98%), Gaps = 1/257 (0%)
Query: 33 IELNAANYTVW-HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 91
+ L++ +Y ++ HFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP
Sbjct: 56 VSLDSPSYVLYRHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP 115
Query: 92 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 151
SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF
Sbjct: 116 SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 175
Query: 152 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 211
VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL
Sbjct: 176 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 235
Query: 212 QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 271
QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS
Sbjct: 236 QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 295
Query: 272 LQSKHSTENDSPTNVQQ 288
LQSKHSTENDSPTNVQQ
Sbjct: 296 LQSKHSTENDSPTNVQQ 312
>gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 79.7 bits (195), Expect = 3e-15
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 17 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHE-------EMNYITAI 67
Q E E +LT + N T+W+ RR +L+ L QK E E+ ++ +
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESC 99
Query: 68 IEEQPKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 125
+ PK+Y WHHR L+ L +P ++ELE A L D +N+H W +R++V + +
Sbjct: 100 LRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVP 159
Query: 126 D-NELQYVDQLLKEDVRNNSVWNQRYFVI--------SNTTGYNDRAVLEREVQYTLEMI 176
EL + D L+ + N S W+ R ++ S G VL +E++
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAF 219
Query: 177 KLVPHNESAWNYLKGIL 193
P+++SAW Y + +L
Sbjct: 220 FTDPNDQSAWFYHRWLL 236
>gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 79.7 bits (195), Expect = 3e-15
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 20/197 (10%)
Query: 17 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSL--QKDLHE-------EMNYITAI 67
Q E E +LT + N T+W+ RR +L+ L QK E E+ ++ +
Sbjct: 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESC 99
Query: 68 IEEQPKNYQVWHHRRVLVEWLRDP--SQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 125
+ PK+Y WHHR L+ L +P ++ELE A L D +N+H W +R++V + +
Sbjct: 100 LRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVP 159
Query: 126 D-NELQYVDQLLKEDVRNNSVWNQRYFVI--------SNTTGYNDRAVLEREVQYTLEMI 176
EL + D L+ + N S W+ R ++ S G VL +E++
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEDVLLKELELVQNAF 219
Query: 177 KLVPHNESAWNYLKGIL 193
P+++SAW Y + +L
Sbjct: 220 FTDPNDQSAWFYHRWLL 236
>gi|153792604 protein prenyltransferase alpha subunit repeat
containing 1 [Homo sapiens]
Length = 402
Score = 45.8 bits (107), Expect = 4e-05
Identities = 53/240 (22%), Positives = 99/240 (41%), Gaps = 48/240 (20%)
Query: 16 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 75
L RDE + +T + LN T W+ R+ L+ S + ++++ + + PK+
Sbjct: 82 LNRDELID----VTCTLLLLNPDFTTAWNVRKELILSGTLNPIKDLHLGKLALTKFPKSP 137
Query: 76 QVWHHRR-VLVEWLRDPS-----------------------QELEFIADILNQDAKNYHA 111
+ W HRR VL + +++ S +E+E + + NY+A
Sbjct: 138 ETWIHRRWVLQQLIQETSLPSFVTKGNLGTIPTERAQRLIQEEMEVCGEAAGRYPSNYNA 197
Query: 112 WQHRQWVIQ-----EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN--DRAV 164
W HR WV+Q + K+ +EL V ++S ++ R F++ + D +V
Sbjct: 198 WSHRIWVLQHLAKLDVKILLDELSSTKHWASMHVSDHSGFHYRQFLLKSLISQTVIDSSV 257
Query: 165 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ-------LLDLQPSHSS 217
+E+ E + P +E A + + P+LL + L+D P H +
Sbjct: 258 MEQN-PLRSEPALVPPKDEEA-----AVSTEEPRINLPHLLEEEVEFSTDLIDSYPGHET 311
>gi|4503165 cullin 3 [Homo sapiens]
Length = 768
Score = 33.1 bits (74), Expect = 0.29
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 214 SHSSPYLIAFLVDIYEDMLENQCDNK-EDILNKALELCEILAKEKDTIRKEYWRYIGRSL 272
S S YL F+ D + ++ + + E IL+KA+ L + +EKD + Y +++ R L
Sbjct: 382 SRSPEYLSLFIDDKLKKGVKGLTEQEVETILDKAMVLFRFM-QEKDVFERYYKQHLARRL 440
Query: 273 QSKHSTENDSPTNV 286
+ S +DS N+
Sbjct: 441 LTNKSVSDDSEKNM 454
>gi|167466177 cell division cycle protein 27 isoform 1 [Homo
sapiens]
Length = 830
Score = 32.7 bits (73), Expect = 0.38
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 20 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 79
E ++A R+AI +N +Y W+ ++ +K EM++ A ++ P++ +
Sbjct: 621 EELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKA-LDINPQSSVLLC 679
Query: 80 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 135
H V+ L+ + L+ + + D KN HR V+ + + + LQ +++L
Sbjct: 680 HIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEEL 735
>gi|167466175 cell division cycle protein 27 isoform 2 [Homo
sapiens]
Length = 824
Score = 32.7 bits (73), Expect = 0.38
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 20 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 79
E ++A R+AI +N +Y W+ ++ +K EM++ A ++ P++ +
Sbjct: 615 EELDKALACFRNAIRVNPRHYNAWYGLGMIYYKQEKFSLAEMHFQKA-LDINPQSSVLLC 673
Query: 80 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 135
H V+ L+ + L+ + + D KN HR V+ + + + LQ +++L
Sbjct: 674 HIGVVQHALKKSEKALDTLNKAIVIDPKNPLCKFHRASVLFANEKYKSALQELEEL 729
>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
Length = 848
Score = 32.0 bits (71), Expect = 0.65
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 132 VDQLLKEDV----RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW- 186
+D++ K+D +N +++ +++ + G D V +R QY E +K PHN AW
Sbjct: 440 LDRISKQDAQELFKNYTIFEKKF---GDRRGIEDIIVSKRRFQYE-EEVKANPHNYDAWF 495
Query: 187 NYLKGILQDRGLSKYPNLLNQLLDLQP-----SHSSPYLIAFL-VDIYEDMLENQCDNKE 240
+YL+ + D + + + P H Y+ ++ +YE++ +
Sbjct: 496 DYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTR 555
Query: 241 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKH 276
+ +LEL + +K T K + Y ++ K+
Sbjct: 556 QVYQASLEL---IPHKKFTFAKMWILYAQFEIRQKN 588
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 32.0 bits (71), Expect = 0.65
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)
Query: 126 DNELQYVDQL------LKEDVRNNSVWNQRYFVISNT------TGYNDRAVLEREVQYTL 173
+N LQ +DQL L+E+ + N ++Q NT T + +L+ EV
Sbjct: 1836 NNYLQQIDQLKERIAGLEEEKQKNKEFSQTLENEKNTLLSQISTKDGELKMLQEEVTKMN 1895
Query: 174 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 233
+ + + S LK ++ L+NQL +L S + I ++LE
Sbjct: 1896 LLNQQIQEELSRVTKLKETAEEEKDDLEERLMNQLAELNGSIGNYCQDVTDAQIKNELLE 1955
Query: 234 NQCDNKEDILNKALELCEILAKEKD----TIRKEY 264
++ N + +++ E + L KEK IRKEY
Sbjct: 1956 SEMKNLKKCVSELEEEKQQLVKEKTKVESEIRKEY 1990
>gi|60685231 tetratricopeptide repeat domain 7B [Homo sapiens]
Length = 843
Score = 32.0 bits (71), Expect = 0.65
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 11 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 70
Y L + A R A++L + H +LL S QK H+ +N I + E
Sbjct: 520 YLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLL-SAQKHYHDALNIIDMALSE 578
Query: 71 QPKNYQVWHHRRVLVEWLRDPSQEL 95
P+N+ + + L R P + L
Sbjct: 579 YPENFILLFSKVKLQSLCRGPDEAL 603
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 31.6 bits (70), Expect = 0.84
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 33/216 (15%)
Query: 50 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE----FIADILNQD 105
L++L K E+MN + A++EE+ K+ +WL+D +E E + ++ +
Sbjct: 842 LQNLLKGKEEQMNTMKAVLEEKEKDL------ANTGKWLQDLQEENESLKAHVQEVAQHN 895
Query: 106 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 165
K + + + K +NEL+ ++ +LKE + S Q + + +
Sbjct: 896 LKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIE 955
Query: 166 EREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLV 225
+ + Q + PH E L ++ +R + L N+L
Sbjct: 956 QLKQQNYQQASSFPPHEE-----LLKVISERE-KEISGLWNEL----------------- 992
Query: 226 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 261
D +D +E+Q D+ K E E LA + ++
Sbjct: 993 DSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQ 1028
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 31.6 bits (70), Expect = 0.84
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 33/216 (15%)
Query: 50 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE----FIADILNQD 105
L++L K E+MN + A++EE+ K+ +WL+D +E E + ++ +
Sbjct: 865 LQNLLKGKEEQMNTMKAVLEEKEKDL------ANTGKWLQDLQEENESLKAHVQEVAQHN 918
Query: 106 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 165
K + + + K +NEL+ ++ +LKE + S Q + + +
Sbjct: 919 LKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIE 978
Query: 166 EREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLV 225
+ + Q + PH E L ++ +R + L N+L
Sbjct: 979 QLKQQNYQQASSFPPHEE-----LLKVISERE-KEISGLWNEL----------------- 1015
Query: 226 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 261
D +D +E+Q D+ K E E LA + ++
Sbjct: 1016 DSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQ 1051
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 31.6 bits (70), Expect = 0.84
Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 33/216 (15%)
Query: 50 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE----FIADILNQD 105
L++L K E+MN + A++EE+ K+ +WL+D +E E + ++ +
Sbjct: 865 LQNLLKGKEEQMNTMKAVLEEKEKDL------ANTGKWLQDLQEENESLKAHVQEVAQHN 918
Query: 106 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL 165
K + + + K +NEL+ ++ +LKE + S Q + + +
Sbjct: 919 LKEASSASQFEELEIVLKEKENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIE 978
Query: 166 EREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLV 225
+ + Q + PH E L ++ +R + L N+L
Sbjct: 979 QLKQQNYQQASSFPPHEE-----LLKVISERE-KEISGLWNEL----------------- 1015
Query: 226 DIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 261
D +D +E+Q D+ K E E LA + ++
Sbjct: 1016 DSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQ 1051
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 31.2 bits (69), Expect = 1.1
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 37/138 (26%)
Query: 90 DPSQ---ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 146
+PSQ E EF+ D D K Q Q +++ L + LKEDV N
Sbjct: 716 EPSQFPSESEFLKDF--GDLKTEEQVQKLQAILKPMML---------RRLKEDVEKNLAP 764
Query: 147 NQRYFV---ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPN 203
Q + ++N RA+LE+ + + + G + PN
Sbjct: 765 KQETIIEVELTNIQKKYYRAILEKNFSF--------------------LSKGAGHTNMPN 804
Query: 204 LLNQLLDLQPSHSSPYLI 221
LLN +++L+ + PYLI
Sbjct: 805 LLNTMMELRKCCNHPYLI 822
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 30.8 bits (68), Expect = 1.4
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 22/231 (9%)
Query: 51 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYH 110
+ L + + E+ I I E +N + H ++ + L E + I L QD +
Sbjct: 481 QELNQSISEKETLIAEIEELDRQNQEATKHMILIKDQLSKQQNEGDSIISKLKQDLNDEK 540
Query: 111 AWQH----------RQWVIQEFKLWDNELQYVDQLLK----EDVRNNSVWNQRYFVISNT 156
H ++ +Q+ KL +E+ D L ED N V SN
Sbjct: 541 KRVHQLEDDKMDITKELDVQKEKLIQSEVALNDLHLTKQKLEDKVENLVDQLNKSQESNV 600
Query: 157 TGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDRGLSKYPNLLNQLL 209
+ + L+ ++ E + + + +S N+ +L++R ++ NL L
Sbjct: 601 SIQKENLELKEHIRQNEEELSRIRNELMQSLNQDSNSNFKDTLLKERE-AEVRNLKQNLS 659
Query: 210 DLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI 260
+L+ + + +AF V + + L C++ L + L L+ EK+TI
Sbjct: 660 ELEQLNENLKKVAFDVKMENEKLVLACEDVRHQLEECLAGNNQLSLEKNTI 710
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 30.4 bits (67), Expect = 1.9
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 19 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY--- 75
D+ + RA ++R A L A + V H+ + L DL + T E+ Y
Sbjct: 3312 DDAALRA--VSRPAASLAAWLWAVLHYGLAHCRGLPTDLLLQQVEATLTREQARLGYYQF 3369
Query: 76 ---QVWHHRRVLVEWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQ 130
+ H L + + D +A L+Q YH W + ++ + W +LQ
Sbjct: 3370 QAQETLEHNLALAKMVEDAQASHNCVAKTLSQAQCGQYHKWPMKAALLTPMRAWTTQLQ 3428
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 30.0 bits (66), Expect = 2.5
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 50 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE----FIADILNQD 105
L++L K E+MN + A++EE+ K+ +WL+D +E E + ++ +
Sbjct: 865 LQNLLKGKEEQMNTMKAVLEEKEKDL------ANTGKWLQDLQEENESLKAHVQEVAQHN 918
Query: 106 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 138
K + + + K +NEL+ ++ +LKE
Sbjct: 919 LKEASSASQFEELEIVLKEKENELKRLEAMLKE 951
>gi|5729840 tubulin, gamma complex associated protein 2 [Homo
sapiens]
Length = 902
Score = 29.3 bits (64), Expect = 4.2
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 123 KLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 179
K WD V Q + + + + + +Y + G++ + +E+ YTL+ V
Sbjct: 426 KYWDQRYTIVQQQIPSFLQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYV 485
Query: 180 PHNESAWNYLKGILQD 195
E A+NY +L D
Sbjct: 486 EQIEKAFNYASKVLLD 501
>gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]
Length = 407
Score = 28.9 bits (63), Expect = 5.5
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 81 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 140
RR+ ++ D QEL + ++ ++ HR +V+ + +L D+ + + L+ D
Sbjct: 244 RRLNLDVQCDSCQELAVVPVFVDPGEES-----HRPFVVVQARLGDSRHRIRKRGLECDG 298
Query: 141 RNNSVWNQRYFVISNTTGYND 161
R N Q++F+ G+ND
Sbjct: 299 RTNLCCRQQFFIDFRLIGWND 319
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 28.9 bits (63), Expect = 5.5
Identities = 52/247 (21%), Positives = 108/247 (43%), Gaps = 40/247 (16%)
Query: 53 LQKDLHEEMNYITAIIEEQ---PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 109
LQ+++HE M TA ++E+ KN ++ ++L+E ++ +L+ + + N + K
Sbjct: 2621 LQREMHE-MAQKTAELQEELSGEKN-RLAGELQLLLEEIKSSKDQLKELT-LENSELKKS 2677
Query: 110 HAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW---NQRYFVISNTTGYNDRAVLE 166
H+ V +E K+ + +Y +L + + ++ ++ N++Y V T Y ++ +
Sbjct: 2678 LDCMHKDQVEKEGKVREEIAEYQLRLHEAEKKHQALLLDTNKQYEVEIQT--YREKLTSK 2735
Query: 167 REV--QYTLEMIKLVPHNESAWNYLKG---ILQDRGLSKYPNLLNQLLDLQPSHSSPYLI 221
E LE+ L E N LK IL++ +K NL
Sbjct: 2736 EECLSSQKLEIDLLKSSKEELNNSLKATTQILEELKKTKMDNLK---------------- 2779
Query: 222 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTEND 281
Y + L+ + + + + ++ C+ L +EK+ ++KE + ++ Q K T
Sbjct: 2780 ------YVNQLKKENERAQGKMKLLIKSCKQLEEEKEILQKELSQL--QAAQEKQKTGTV 2831
Query: 282 SPTNVQQ 288
T V +
Sbjct: 2832 MDTKVDE 2838
>gi|12597661 mitochondrial ribosomal protein L44 [Homo sapiens]
Length = 332
Score = 28.9 bits (63), Expect = 5.5
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 171 YTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLN-----QLLDLQPSHSSPYLIAFLV 225
++L+++K N + Q G+ K LLN +L + S S L FL
Sbjct: 83 FSLDLLKTAFVNSCYIKSEEAKRQQLGIEKEAVLLNLKSNQELSEQGTSFSQTCLTQFLE 142
Query: 226 DIYEDMLENQCDNKEDILNKALELCEI---LAKEKDTIRKEY 264
D Y DM N D L +C + LA E+ T+ +E+
Sbjct: 143 DEYPDMPTEGIKNLVDFLTGEEVVCHVARNLAVEQLTLSEEF 184
>gi|148727288 low density lipoprotein receptor-related protein 6
[Homo sapiens]
Length = 1613
Score = 28.5 bits (62), Expect = 7.2
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 130 QYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWN 187
QY D + D W++R +N T +R +++ + Y ++++ +S WN
Sbjct: 840 QYQDYIYWTD------WSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWN 891
>gi|27436951 lamin B2 [Homo sapiens]
Length = 600
Score = 28.5 bits (62), Expect = 7.2
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 47 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 106
RV L++ + L EE+++ ++ EE+ + + H RR LVE QE +F ++
Sbjct: 185 RVDLENRCQSLQEELDFRKSVFEEEVRETRRRHERR-LVEVDSSRQQEYDFKMAQALEEL 243
Query: 107 KNYHAWQHRQWVIQ 120
++ H Q R + ++
Sbjct: 244 RSQHDEQVRLYKLE 257
>gi|31542634 filamin A interacting protein 1 [Homo sapiens]
Length = 1213
Score = 28.5 bits (62), Expect = 7.2
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 193 LQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 252
L+++ Y +L QLL + H +YE LEN+ D +NK+ + +
Sbjct: 154 LEEKQKETYRRMLEQLLLAEKCHRRT--------VYE--LENEKHKHTDYMNKSDDFTNL 203
Query: 253 LAKEKDTIRK 262
L +E++ ++K
Sbjct: 204 LEQERERLKK 213
>gi|33356128 NMDA receptor regulated 1-like protein isoform 1 [Homo
sapiens]
Length = 864
Score = 28.5 bits (62), Expect = 7.2
Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 26/222 (11%)
Query: 45 FRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADIL 102
F+R+L QK + + I+ ++ + + + + L + EF+ L
Sbjct: 14 FKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGL 73
Query: 103 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV---ISNTTGY 159
D K++ W + + K +D ++ LK D N + + + + GY
Sbjct: 74 RNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGY 133
Query: 160 NDRAVLEREVQYTLEMIKLVPHNESAW---NYLKGILQDRGLSKYPNLLNQLLDLQ--PS 214
RE +Y ++++L P ++W +L+D ++ LL + Q P
Sbjct: 134 -------RETRY--QLLQLRPTQRASWIGYAIAYHLLKDYDMAL--KLLEEFRQTQQVPP 182
Query: 215 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 256
+ Y + L+ + +NQ + D+L ++LE E+ K+
Sbjct: 183 NKIDYEYSELI-----LYQNQVMREADLLQESLEHIEMYEKQ 219
>gi|160707985 NMDA receptor regulated 1-like protein isoform 3 [Homo
sapiens]
Length = 429
Score = 28.5 bits (62), Expect = 7.2
Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 26/222 (11%)
Query: 45 FRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADIL 102
F+R+L QK + + I+ ++ + + + + L + EF+ L
Sbjct: 14 FKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGL 73
Query: 103 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV---ISNTTGY 159
D K++ W + + K +D ++ LK D N + + + + GY
Sbjct: 74 RNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGY 133
Query: 160 NDRAVLEREVQYTLEMIKLVPHNESAW---NYLKGILQDRGLSKYPNLLNQLLDLQ--PS 214
RE +Y ++++L P ++W +L+D ++ LL + Q P
Sbjct: 134 -------RETRY--QLLQLRPTQRASWIGYAIAYHLLKDYDMAL--KLLEEFRQTQQVPP 182
Query: 215 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 256
+ Y + L+ + +NQ + D+L ++LE E+ K+
Sbjct: 183 NKIDYEYSELI-----LYQNQVMREADLLQESLEHIEMYEKQ 219
>gi|33356130 NMDA receptor regulated 1-like protein isoform 2 [Homo
sapiens]
Length = 311
Score = 28.5 bits (62), Expect = 7.2
Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 26/222 (11%)
Query: 45 FRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWLRDPSQELEFIADIL 102
F+R+L QK + + I+ ++ + + + + L + EF+ L
Sbjct: 14 FKRILKCYEQKQYKNGLKFCKMILSNPKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGL 73
Query: 103 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV---ISNTTGY 159
D K++ W + + K +D ++ LK D N + + + + GY
Sbjct: 74 RNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGY 133
Query: 160 NDRAVLEREVQYTLEMIKLVPHNESAW---NYLKGILQDRGLSKYPNLLNQLLDLQ--PS 214
RE +Y ++++L P ++W +L+D ++ LL + Q P
Sbjct: 134 -------RETRY--QLLQLRPTQRASWIGYAIAYHLLKDYDMAL--KLLEEFRQTQQVPP 182
Query: 215 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 256
+ Y + L+ + +NQ + D+L ++LE E+ K+
Sbjct: 183 NKIDYEYSELI-----LYQNQVMREADLLQESLEHIEMYEKQ 219
>gi|13562090 apolipoprotein L2 [Homo sapiens]
Length = 337
Score = 28.1 bits (61), Expect = 9.3
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 76 QVWHHRRVLVEWLRDPSQELEF----IADILNQDAKNYHA--WQHRQWVIQEFKLWDNEL 129
+ W+ E RD + EL +A + KN H QHRQW ++EF EL
Sbjct: 33 EAWNGFVAAAELPRDEADELRKALNKLASHMVMKDKNRHDKDQQHRQWFLKEFPRLKREL 92
Query: 130 Q-YVDQL--LKEDVRNNSVWNQRYFVISNTTG 158
+ ++ +L L E+V V+SN+ G
Sbjct: 93 EDHIRKLRALAEEVEQVHRGTTIANVVSNSVG 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,556,340
Number of Sequences: 37866
Number of extensions: 439716
Number of successful extensions: 1308
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1249
Number of HSP's gapped (non-prelim): 40
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.