Guide to the Human Genome
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Name: APOL2 Sequence: fasta or formatted (337aa) NCBI GI: 13562090
Description:

apolipoprotein L2

Referenced in:

Lipoproteins

Other entries for this name:
alt mRNA [337aa] apolipoprotein L2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         34           4
 C cysteine            0.3          1           1
 D aspartate           4.5         15           2
 E glutamate           8.3         28           2
 F phenylalanine       2.7          9           1
 G glycine             8.3         28           2
 H histidine           2.4          8           1
 I isoleucine          4.7         16           2
 K lysine              5.3         18           2
 L leucine            11.9         40           4
 M methionine          2.4          8           1
 N asparagine          4.7         16           1
 P proline             3.3         11           3
 Q glutamine           5.3         18           2
 R arginine            6.5         22           2
 S serine              4.7         16           2
 T threonine           4.7         16           2
 V valine              7.4         25           2
 W tryptophan          0.9          3           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apolipoprotein L2 
APOL2                 1.000   apolipoprotein L2 
APOL1                 0.563   apolipoprotein L1 isoform c precursor 
APOL1                 0.563   apolipoprotein L1 isoform a precursor 
APOL1                 0.563   apolipoprotein L1 isoform b precursor 
APOL1                 0.563   apolipoprotein L1 isoform a precursor 
APOL3                 0.461   apolipoprotein L3 isoform 1 
APOL4                 0.341   apolipoprotein L4 isoform 1 
APOL4                 0.341   apolipoprotein L4 isoform 2 precursor 
APOL3                 0.246   apolipoprotein L3 isoform 3 
APOL3                 0.246   apolipoprotein L3 isoform 3 
APOL6                 0.197   apolipoprotein L6 
APOL5                 0.175   apolipoprotein L5 
APOLD1                0.039   apolipoprotein L domain containing 1 isoform 1 [Hom...
APOLD1                0.039   apolipoprotein L domain containing 1 isoform 2 [Hom...
ARHGEF18              0.011   Rho/Rac guanine nucleotide exchange factor 18 isofo...
ARHGEF18              0.011   Rho/Rac guanine nucleotide exchange factor 18 isofor...
KIF5C                 0.011   kinesin family member 5C 
C14orf145             0.011   hypothetical protein LOC145508 
KRT19                 0.009   keratin 19 
C6orf153              0.009   hypothetical protein LOC88745 
ELN                   0.008   elastin isoform e precursor 
ELN                   0.008   elastin isoform d precursor 
ELN                   0.008   elastin isoform c precursor 
ELN                   0.008   elastin isoform b precursor 
ELN                   0.008   elastin isoform a precursor 
NEFM                  0.008   neurofilament, medium polypeptide 150kDa isoform 1 ...
C14orf39              0.008   hypothetical protein LOC317761 
MYH15                 0.008   myosin, heavy polypeptide 15 
HSPA1B                0.008   heat shock 70kDa protein 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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