Guide to the Human Genome
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Name: KIAA1618 Sequence: fasta or formatted (1063aa) NCBI GI: 66529203
Description:

hypothetical protein LOC57714

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         72           3
 C cysteine            2.6         28           2
 D aspartate           4.5         48           1
 E glutamate           8.8         94           2
 F phenylalanine       3.3         35           2
 G glycine             6.6         70           3
 H histidine           2.8         30           1
 I isoleucine          3.6         38           2
 K lysine              6.8         72           5
 L leucine            10.4        111           3
 M methionine          2.2         23           1
 N asparagine          2.9         31           3
 P proline             5.9         63           2
 Q glutamine           5.8         62           2
 R arginine            3.5         37           2
 S serine              9.0         96           3
 T threonine           5.5         58           2
 V valine              4.7         50           2
 W tryptophan          2.0         21           1
 Y tyrosine            2.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57714 
NEFH                  0.014   neurofilament, heavy polypeptide 200kDa 
OTOG                  0.014   PREDICTED: otogelin isoform 1 
OTOG                  0.014   PREDICTED: otogelin isoform 2 
OTOG                  0.014   PREDICTED: otogelin isoform 2 
OTOG                  0.014   PREDICTED: otogelin isoform 1 
OTOG                  0.014   PREDICTED: otogelin isoform 2 
OTOG                  0.014   PREDICTED: otogelin isoform 1 
RP1L1                 0.013   retinitis pigmentosa 1-like 1 
TXNDC2                0.012   thioredoxin domain-containing 2 isoform 2 
PCLO                  0.012   piccolo isoform 2 
PCLO                  0.012   piccolo isoform 1 
MAP7D1                0.012   MAP7 domain containing 1 
BAT2D1                0.011   HBxAg transactivated protein 2 
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.010   Treacher Collins-Franceschetti syndrome 1 isoform c ...
SRRM2                 0.010   splicing coactivator subunit SRm300 
ARHGAP30              0.010   Rho GTPase activating protein 30 isoform 1 
LIG1                  0.010   DNA ligase I 
IWS1                  0.009   IWS1 homolog 
CLIC6                 0.009   chloride intracellular channel 6 
THOC2                 0.009   THO complex 2 
SMTNL1                0.009   smoothelin-like 1 
MAP1A                 0.009   microtubule-associated protein 1A 
PKD1L1                0.009   polycystin-1L1 
USP31                 0.008   ubiquitin specific peptidase 31 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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