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Search of human proteins with 66346723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66346723 mitochondrial phosphoenolpyruvate carboxykinase 2
isoform 2 precursor [Homo sapiens]
(441 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66346723 mitochondrial phosphoenolpyruvate carboxykinase 2 is... 916 0.0
gi|66346721 mitochondrial phosphoenolpyruvate carboxykinase 2 is... 857 0.0
gi|187281517 cytosolic phosphoenolpyruvate carboxykinase 1 [Homo... 600 e-172
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 35 0.18
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 35 0.18
gi|75677365 dynein heavy chain domain 3 [Homo sapiens] 31 2.0
gi|223005906 X-linked ubiquitin thioesterase 27 [Homo sapiens] 30 3.3
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 30 3.3
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 30 3.3
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 30 3.3
gi|166362732 ELK1 protein [Homo sapiens] 30 4.4
gi|166362730 ELK1 protein [Homo sapiens] 30 4.4
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 30 4.4
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 30 4.4
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 30 4.4
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 30 4.4
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 30 4.4
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 30 4.4
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 30 4.4
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 30 4.4
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 30 4.4
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 30 4.4
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 30 4.4
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 30 4.4
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 30 4.4
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 30 4.4
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 30 4.4
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 30 4.4
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 30 4.4
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 30 4.4
>gi|66346723 mitochondrial phosphoenolpyruvate carboxykinase 2
isoform 2 precursor [Homo sapiens]
Length = 441
Score = 916 bits (2368), Expect = 0.0
Identities = 441/441 (100%), Positives = 441/441 (100%)
Query: 1 MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGI 60
MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGI
Sbjct: 1 MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGI 60
Query: 61 HICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV 120
HICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV
Sbjct: 61 HICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV 120
Query: 121 QLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTD 180
QLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTD
Sbjct: 121 QLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTD 180
Query: 181 SAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHV 240
SAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHV
Sbjct: 181 SAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHV 240
Query: 241 PDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKRYVAA 300
PDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKRYVAA
Sbjct: 241 PDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKRYVAA 300
Query: 301 AFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSAT 360
AFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSAT
Sbjct: 301 AFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSAT 360
Query: 361 TNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPGMCGGEGVA 420
TNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPGMCGGEGVA
Sbjct: 361 TNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPGMCGGEGVA 420
Query: 421 QPPGLSTLMVEKLSPQPPTIF 441
QPPGLSTLMVEKLSPQPPTIF
Sbjct: 421 QPPGLSTLMVEKLSPQPPTIF 441
>gi|66346721 mitochondrial phosphoenolpyruvate carboxykinase 2
isoform 1 precursor [Homo sapiens]
Length = 640
Score = 857 bits (2213), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGI 60
MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGI
Sbjct: 1 MAALYRPGLRLNWHGLSPLGWPSCRSIQTLRVLSGDLGQLPTGIRDFVEHSARLCQPEGI 60
Query: 61 HICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV 120
HICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV
Sbjct: 61 HICDGTEAENTATLTLLEQQGLIRKLPKYNNCWLARTDPKDVARVESKTVIVTPSQRDTV 120
Query: 121 QLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTD 180
QLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTD
Sbjct: 121 QLPPGGARGQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTD 180
Query: 181 SAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHV 240
SAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHV
Sbjct: 181 SAYVVASMRIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHV 240
Query: 241 PDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKRYVAA 300
PDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKRYVAA
Sbjct: 241 PDQREIISFGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKRYVAA 300
Query: 301 AFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSAT 360
AFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSAT
Sbjct: 301 AFPSACGKTNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSAT 360
Query: 361 TNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPG 412
TNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPG
Sbjct: 361 TNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLPPGVTVTSWLGKPWKPG 412
>gi|187281517 cytosolic phosphoenolpyruvate carboxykinase 1 [Homo
sapiens]
Length = 622
Score = 600 bits (1548), Expect = e-172
Identities = 283/392 (72%), Positives = 332/392 (84%), Gaps = 3/392 (0%)
Query: 31 RVLSGDLGQLPTGIRDFVEHSARLCQPEGIHICDGTEAENTATLTLLEQQGLIRKLPKYN 90
+V+ G L LP +R+F+E++A LCQP+ IHICDG+E EN L +E++G++R+L KY+
Sbjct: 14 KVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYD 73
Query: 91 NCWLARTDPKDVARVESKTVIVTPSQRDTVQLPPGGARGQLGNWMSPADFQRAVDERFPG 150
NCWLA TDP+DVAR+ESKTVIVT QRDTV +P G QLG WMS DF++A + RFPG
Sbjct: 74 NCWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPG 132
Query: 151 CMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASMRIMTRLGTPVLQALGDGDFVKC 210
CM+GRTMYV+PFSMGP+GSPLS+IG++LTDS YVVASMRIMTR+GTPVL+A+GDG+FVKC
Sbjct: 133 CMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAVGDGEFVKC 192
Query: 211 LHSVGQPLTGQGEPVSQWPCNPEKTLIGHVPDQREIISFGSGYGGNSLLGKKCFALRIAS 270
LHSVG PL Q V+ WPCNPE TLI H+PD+REIISFGSGYGGNSLLGKKCFALR+AS
Sbjct: 193 LHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMAS 252
Query: 271 RLARDEGWLAEHMLILGITSPAGKKRYVAAAFPSACGKTNLAMMRPALPGWKVECVGDDI 330
RLA++EGWLAEHMLILGIT+P G+K+Y+AAAFPSACGKTNLAMM P+LPGWKVECVGDDI
Sbjct: 253 RLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDI 312
Query: 331 AWMRFDSEGRLRAINPENGFFGVAPGTSATTNPNAMATIQSNTIFTNVAETSDGGVYWEG 390
AWM+FD++G LRAINPENGFFGVAPGTS TNPNA+ TIQ NTIFTNVAETSDGGVYWEG
Sbjct: 313 AWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEG 372
Query: 391 IDQPLPPGVTVTSWLGKPWKPGMCGGEGVAQP 422
ID+PL GVT+TSW K W GE A P
Sbjct: 373 IDEPLASGVTITSWKNKEWSSE--DGEPCAHP 402
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 34.7 bits (78), Expect = 0.18
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 119 TVQLPPGGARGQLGNW--MSPADFQRAVDERFPG----CMQGRTMYVLPFSMGPVGSPLS 172
TV+ P GA+ GN+ + F + E + G G+ Y L ++ GP GSPLS
Sbjct: 1372 TVEPVPEGAQLSFGNFAQLGHESFYWQLPETYQGDKVAAYGGKLRYTLSYTAGPQGSPLS 1431
Query: 173 RIGVQLT-DSAYVVAS 187
VQ+T ++ +VAS
Sbjct: 1432 DPDVQITGNNIMLVAS 1447
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 34.7 bits (78), Expect = 0.18
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 393 QPLPPGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEKLSPQPP 438
QP P G +G+P KPG G GV PPGL + E P PP
Sbjct: 743 QPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGE---PGPP 785
Score = 32.3 bits (72), Expect = 0.88
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 382 SDGGVYWEGIDQPLPPGVTVTSWLGKPWKPGMCGGEGVAQPPG 424
S G + + G+ P PG+ W+G W+PG G G+ PPG
Sbjct: 880 SQGDLIFSGM--PGAPGL----WMGSSWQPGPQGPPGIPGPPG 916
Score = 30.8 bits (68), Expect = 2.6
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 394 PLPPGVTVTSWL----GKPWKPGMCGGEGVAQPPGL 425
P PPG+ + L GK KPG+ G G A PPGL
Sbjct: 1203 PGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGL 1238
Score = 29.6 bits (65), Expect = 5.7
Identities = 42/145 (28%), Positives = 51/145 (35%), Gaps = 23/145 (15%)
Query: 287 GITSPAGKKRYVAAAFPSACGKTNLAMMRPALPGWKVEC--VGDDIAWMRFDSEGRLRAI 344
G PAG + P GKT P LPG K +C G + R +EG A+
Sbjct: 1228 GDPGPAGPPGLMGP--PGFKGKTG----HPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAM 1281
Query: 345 NPENGFFGVAPGTSATTNPNAMATIQSNTIFTNVAETSDGGVYWE----GID-QPLPPGV 399
P+ PG P + V D G E G+ QP PPG
Sbjct: 1282 GPQG-----RPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGH 1336
Query: 400 TVTSWLGKPWKPGMCGGEGVAQPPG 424
G P +PG G G PPG
Sbjct: 1337 P-----GPPGEPGTDGAAGKEGPPG 1356
>gi|75677365 dynein heavy chain domain 3 [Homo sapiens]
Length = 4427
Score = 31.2 bits (69), Expect = 2.0
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 232 PEKTLIGHVPDQREIISFGSGYGGNSLLGKKCFAL--RIASRLARDEGWLAEHMLILGIT 289
P+ TLI EII FG G+G +L KK + L +L+R + + + +
Sbjct: 1931 PDSTLIA------EIILFGEGFGNCKILAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLL 1984
Query: 290 SPAGKKR 296
AGKKR
Sbjct: 1985 RYAGKKR 1991
>gi|223005906 X-linked ubiquitin thioesterase 27 [Homo sapiens]
Length = 438
Score = 30.4 bits (67), Expect = 3.3
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 220 GQGEPVSQWPCN-PEKTLIGHVPDQREII-SFGSGYGGNSLLGKKCF 264
G GE W PE L+GH P +R I SF G G LG CF
Sbjct: 42 GLGEKFPTWETTKPELELLGHNPRRRRITSSFTIGLRGLINLGNTCF 88
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 394 PLPPGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEKLSPQP 437
P PPG V G P PG G +G PPG+S L QP
Sbjct: 385 PGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 394 PLPPGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEKLSPQP 437
P PPG V G P PG G +G PPG+S L QP
Sbjct: 385 PGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 30.4 bits (67), Expect = 3.3
Identities = 18/44 (40%), Positives = 20/44 (45%)
Query: 394 PLPPGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEKLSPQP 437
P PPG V G P PG G +G PPG+S L QP
Sbjct: 385 PGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLDGQP 428
>gi|166362732 ELK1 protein [Homo sapiens]
Length = 428
Score = 30.0 bits (66), Expect = 4.4
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQP-------PGL-STLMVEKLSPQPP 438
PG TV+ G P GM G G+A+ GL ST ++ L PQPP
Sbjct: 123 PGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPP 172
>gi|166362730 ELK1 protein [Homo sapiens]
Length = 428
Score = 30.0 bits (66), Expect = 4.4
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQP-------PGL-STLMVEKLSPQPP 438
PG TV+ G P GM G G+A+ GL ST ++ L PQPP
Sbjct: 123 PGDTVSGKPGTPKGAGMAGPGGLARSSRNEYMRSGLYSTFTIQSLQPQPP 172
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 30.0 bits (66), Expect = 4.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 390 GIDQPLPPGVTVTSWLGKPWKPGMCGGEGVAQPPG 424
GI P PG+ TS LG P PG G +G P G
Sbjct: 1087 GIGLPGSPGLPGTSALGLPGSPGAPGPQGPPGPSG 1121
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 335 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 284 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 319
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 273 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 308
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 275 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 310
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 278 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 313
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 313 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 348
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 282 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 317
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 335 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 335 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 316 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 351
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 294 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 329
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 306 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 341
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 335 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 335 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 370
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 313 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 348
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 316 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 351
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 30.0 bits (66), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 397 PGVTVTSWLGKPWKPGMCGGEGVAQPPGLSTLMVEK 432
PG+ V G+P PG G +G PGL L+ +K
Sbjct: 318 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQK 353
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,854,195
Number of Sequences: 37866
Number of extensions: 1011466
Number of successful extensions: 3200
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2803
Number of HSP's gapped (non-prelim): 397
length of query: 441
length of database: 18,247,518
effective HSP length: 105
effective length of query: 336
effective length of database: 14,271,588
effective search space: 4795253568
effective search space used: 4795253568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.