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Search of human proteins with 66346679
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo
sapiens]
(408 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo sapi... 841 0.0
gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo sapi... 822 0.0
gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo sapi... 800 0.0
gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo sapi... 781 0.0
gi|157676331 hyaluronan binding protein 4 [Homo sapiens] 250 2e-66
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 49 6e-06
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 44 2e-04
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 44 2e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 43 6e-04
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 41 0.002
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 41 0.002
gi|9966841 cell death regulator aven [Homo sapiens] 41 0.002
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 40 0.003
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 40 0.003
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 40 0.003
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 40 0.003
gi|7657138 golgi integral membrane protein 4 [Homo sapiens] 40 0.005
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 39 0.006
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ... 39 0.008
gi|62988361 absent in melanoma 1 [Homo sapiens] 39 0.008
gi|24497501 forkhead box A1 [Homo sapiens] 39 0.011
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 38 0.014
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 38 0.014
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 38 0.014
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 38 0.014
gi|169217514 PREDICTED: Inactive ubiquitin carboxyl-terminal hyd... 38 0.019
gi|169217654 PREDICTED: similar to deubiquitinating enzyme DUB1 ... 38 0.019
gi|239758075 PREDICTED: similar to deubiquitinating enzyme DUB1 ... 38 0.019
gi|239749360 PREDICTED: Inactive ubiquitin carboxyl-terminal hyd... 38 0.019
gi|41148616 PREDICTED: Inactive ubiquitin carboxyl-terminal hydr... 38 0.019
>gi|66346679 SERPINE1 mRNA binding protein 1 isoform 1 [Homo
sapiens]
Length = 408
Score = 841 bits (2172), Expect = 0.0
Identities = 408/408 (100%), Positives = 408/408 (100%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
Query: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
Sbjct: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
Query: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 360
RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
Sbjct: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 360
Query: 361 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 408
DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 361 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 408
>gi|66346681 SERPINE1 mRNA binding protein 1 isoform 2 [Homo
sapiens]
Length = 402
Score = 822 bits (2122), Expect = 0.0
Identities = 402/408 (98%), Positives = 402/408 (98%), Gaps = 6/408 (1%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
RGDGFDSRGKREFDRHSGSDRS GLKHEDKRGGSGSHNWGTVKDELTESPKYIQK
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRS------GLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 234
Query: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
Sbjct: 235 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 294
Query: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 360
RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
Sbjct: 295 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 354
Query: 361 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 408
DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 355 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 402
>gi|66346683 SERPINE1 mRNA binding protein 1 isoform 3 [Homo
sapiens]
Length = 393
Score = 800 bits (2067), Expect = 0.0
Identities = 393/408 (96%), Positives = 393/408 (96%), Gaps = 15/408 (3%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELT-------- 232
Query: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
Sbjct: 233 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 285
Query: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 360
RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
Sbjct: 286 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 345
Query: 361 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 408
DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 346 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 393
>gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo
sapiens]
Length = 387
Score = 781 bits (2017), Expect = 0.0
Identities = 387/408 (94%), Positives = 387/408 (94%), Gaps = 21/408 (5%)
Query: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ
Sbjct: 1 MPGHLQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQ 60
Query: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE
Sbjct: 61 TNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGE 120
Query: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG
Sbjct: 121 GKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
RGDGFDSRGKREFDRHSGSDR SGLKHEDKRGGSGSHNWGTVKDELT
Sbjct: 181 RGDGFDSRGKREFDRHSGSDR------SGLKHEDKRGGSGSHNWGTVKDELT-------- 226
Query: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 300
DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD
Sbjct: 227 -------DLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKD 279
Query: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 360
RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG
Sbjct: 280 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFG 339
Query: 361 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 408
DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA
Sbjct: 340 DLGRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPEAFPALA 387
>gi|157676331 hyaluronan binding protein 4 [Homo sapiens]
Length = 413
Score = 250 bits (638), Expect = 2e-66
Identities = 177/431 (41%), Positives = 230/431 (53%), Gaps = 60/431 (13%)
Query: 5 LQEGFGCVVTNRFDQLFDDESDPFEVLKAAENKKKE----------AGGGGVGGPGAKSA 54
+QE FGCVV NRF QL DDESDPF++L+ AE ++++ A G G G +S
Sbjct: 16 MQESFGCVVANRFHQLLDDESDPFDILREAERRRQQQLQRKRRDEAAAAAGAGPRGGRSP 75
Query: 55 AQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPD 114
A A+ + AG R+ESQK+RK+ LP V + P L+ G +R RR +
Sbjct: 76 AGASG----HRAGAGGRRESQKERKS-LPAPVA----QRPDSPGGGLQAPGQKRTPRRGE 126
Query: 115 QQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGG--------EFSVDRPIIDRPIRGRG 166
QQ + + + ER R R +P E + + E DR DRP+RGRG
Sbjct: 127 QQGWNDSRGPEGMLERAERRSYREYRPYETERQADFTAEKFPDEKPGDRFDRDRPLRGRG 186
Query: 167 GLGRGRGGRGRGMGRG----DGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSH 222
G G GRGRG G G D FD RGKREF+R+ G+D+ + ++ ED GG G
Sbjct: 187 GPRGGMRGRGRG-GPGNRVFDAFDQRGKREFERYGGNDKIA------VRTEDNMGGCGVR 239
Query: 223 NWGTVKDELTESPKYIQKQISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKE 282
WG+ KD P + +++ V EE+ + P ++ K E+E +E
Sbjct: 240 TWGSGKDTSDVEPT----------APMEEPTVVEES----QGTPEEESPAKVPELEVEEE 285
Query: 283 EGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD- 341
+EMTLDEWK +Q + R K EFNIRKP K V+HKSK + +D D
Sbjct: 286 TQVQEMTLDEWKNLQEQTRPKPEFNIRKPESTVPS---KAVVIHKSKYRDDMVKDDYEDD 342
Query: 342 -HHFRKPANDITSQLEINFGDLGRPGRGGRGG-RGGRGRGGR-PNRGSRTDKSSAS-APD 397
H FRKPANDITSQLEINFG+L RPGRG RGG RGGRGR R N G R + AP+
Sbjct: 343 SHVFRKPANDITSQLEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAEVVMQDVAPN 402
Query: 398 VDDPEAFPALA 408
DDPE FPAL+
Sbjct: 403 PDDPEDFPALS 413
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 49.3 bits (116), Expect = 6e-06
Identities = 67/305 (21%), Positives = 115/305 (37%), Gaps = 41/305 (13%)
Query: 20 LFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRK 79
L DD +D EV +E K K G G G + + + R++ +KD+
Sbjct: 626 LSDDLTDKAEV---SEGKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKG 682
Query: 80 NPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFE 139
G +++ E + +A K+E +R G +Q+ + +G +R E E
Sbjct: 683 R------GEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGE---- 732
Query: 140 KPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSR-----GKREFD 194
EE GEG E DR + + G G+ G G+ + G+R+ +
Sbjct: 733 ---EEHGEGEEEEGDREEEEE-----------KEGEGKEEGEGEEVEGEREKEEGERKKE 778
Query: 195 RHSGSDRSSFSHYS---GLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQ 251
+G + G + E + G G V+ E K +++ + ++
Sbjct: 779 ERAGKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREE------EEEE 832
Query: 252 SNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKP 311
EE EGEE + E E + EE EEG E +E + ++ + E
Sbjct: 833 GEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGE 892
Query: 312 NEGAD 316
EG +
Sbjct: 893 GEGEE 897
Score = 45.8 bits (107), Expect = 7e-05
Identities = 65/281 (23%), Positives = 105/281 (37%), Gaps = 37/281 (13%)
Query: 22 DDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNP 81
++E D E + K+E G V G K + + AGK+ + E + D+
Sbjct: 740 EEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGE---RKKEERAGKEEKGEEEGDQGE- 795
Query: 82 LPPSVGVVDKKEETQPPVALKKEG--------IRRVGRRPDQQLQGEGKIIDRRPERRPP 133
++EET+ K+EG G R +++ +GEG+ + E
Sbjct: 796 --------GEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEG 847
Query: 134 R--ERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGR----GDGFDS 187
E E EE+GE GE + G G G G G G G G+G +
Sbjct: 848 EGEEEEGEGKGEEEGEEGEGEEE---------GEEGEGEGEEEEGEGEGEEEGEGEGEEE 898
Query: 188 RGKREFDRHS-GSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNY 246
G+ E + G G + ++ G G G + E E +++ +
Sbjct: 899 EGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGE-EEEGEWEG 957
Query: 247 SDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKE 287
+ + EE EGE + E +E E E +EEG +E
Sbjct: 958 EEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEE 998
Score = 43.5 bits (101), Expect = 3e-04
Identities = 65/304 (21%), Positives = 110/304 (36%), Gaps = 24/304 (7%)
Query: 35 ENKKKEAGGGGVG------GPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGV 88
E K +E G G G G G + + GK R+E +++ + G
Sbjct: 784 EEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGE 843
Query: 89 VDKKE--ETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKG 146
++ E E + ++EG G ++ +GEG+ + E E E EE+G
Sbjct: 844 EEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGE---EEEG 900
Query: 147 EG-----GEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDR 201
EG GE + + G G G G G G G+ + G+ E G +
Sbjct: 901 EGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEE 960
Query: 202 SSFSH--YSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQ-----ISYNYSDLDQSNV 254
G ++ G G G + E E + +++ + ++
Sbjct: 961 EGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGE 1020
Query: 255 TEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEG 314
E EGEE + E E E EE ++EG E + + ++ K + + NE
Sbjct: 1021 VEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRN-REEEEEEEGKYQETGEEENER 1079
Query: 315 ADGQ 318
DG+
Sbjct: 1080 QDGE 1083
Score = 39.7 bits (91), Expect = 0.005
Identities = 61/303 (20%), Positives = 104/303 (34%), Gaps = 30/303 (9%)
Query: 36 NKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEET 95
N++ E GG G G + + GK+ + + + + G K+E
Sbjct: 724 NQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGERE--KEEGERKKEERA 781
Query: 96 QPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEK-GEGGEFSVD 154
++EG + G + + +GE K E E + E+ EE+ GEG E +
Sbjct: 782 GKEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGE 841
Query: 155 RPIIDRPIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHED 214
G G G G G G +G + G+ E + G G E+
Sbjct: 842 ---------GEEEEGEGEEEEGEGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEG---EE 889
Query: 215 KRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQSNVTEETPEGEEHHPVADTENKE 274
+ G G G + E + E +GEE + E +E
Sbjct: 890 EGEGEGEEEEGEGEGEEEGE---------------GEGEEEEGEGKGEEEGEEGEGEGEE 934
Query: 275 NEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAH 334
E E E+G E +E + ++ + E EG +G+ + + + EE
Sbjct: 935 EEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEE 994
Query: 335 AED 337
E+
Sbjct: 995 GEE 997
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 44.3 bits (103), Expect = 2e-04
Identities = 67/254 (26%), Positives = 94/254 (37%), Gaps = 67/254 (26%)
Query: 143 EEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGM----------GRGDGFDSRGKRE 192
++ G GG + DR RGRGG G G GG G G GRG G RG
Sbjct: 198 DQSGGGGSGGYGQQ--DRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGM- 254
Query: 193 FDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQS 252
GSDR F+ + G + + R S +D + ++Q
Sbjct: 255 ----GGSDRGGFNKFGGPRDQGSRHDS-------EQDNSDNNTIFVQGL---------GE 294
Query: 253 NVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTL-DEWKAIQNKDRAKVEFNIRKP 311
NVT E+ VAD + ++ K+ G + L + + + K A V F+ P
Sbjct: 295 NVTIES--------VADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD-DPP 345
Query: 312 NEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRG 371
+ A W G + + + A T + + N RGG
Sbjct: 346 SAKAAIDWFDGKEFSGNPIKVSFA----------------TRRADFN--------RGGGN 381
Query: 372 GRGGRGRGGRPNRG 385
GRGGRGRGG RG
Sbjct: 382 GRGGRGRGGPMGRG 395
Score = 33.5 bits (75), Expect = 0.36
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 366 GRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDPE 402
GRGGRGG GG RGG G D+ S + D+ +
Sbjct: 247 GRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSD 283
Score = 32.7 bits (73), Expect = 0.61
Identities = 53/200 (26%), Positives = 73/200 (36%), Gaps = 56/200 (28%)
Query: 47 GGPGAKSAAQAAAQTNSN-------AAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPV 99
GGP + + + Q NS+ G+ + ES D +G++ ++T P+
Sbjct: 266 GGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFK----QIGIIKTNKKTGQPM 321
Query: 100 ALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKG-----EGGEFSVD 154
I R +L+GE + F+ P K +G EFS +
Sbjct: 322 ------INLYTDRETGKLKGEATV-------------SFDDPPSAKAAIDWFDGKEFSGN 362
Query: 155 RPIIDRPIR----GRGGLGRGRGGRGRG--MGRGDGFDSRGKREFDRHSGSDRSSFSHYS 208
+ R RGG G GRGGRGRG MGRG G+ G G R F
Sbjct: 363 PIKVSFATRRADFNRGG-GNGRGGRGRGGPMGRG-GYGGGGS------GGGGRGGFPSGG 414
Query: 209 GLKHEDKRGGSGSHNWGTVK 228
G GG G G K
Sbjct: 415 G-------GGGGQQRAGDWK 427
Score = 30.4 bits (67), Expect = 3.0
Identities = 45/156 (28%), Positives = 55/156 (35%), Gaps = 29/156 (18%)
Query: 42 GGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGV-VDKKEETQPPVA 100
G GG GG G+ + + G Q R D K P P + + E A
Sbjct: 393 GRGGYGGGGSGGGGRGGFPSGGGGGGGQQRAG---DWKCPNPTCENMNFSWRNECNQCKA 449
Query: 101 LKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDR 160
K +G G P G DRR R + +G GG+
Sbjct: 450 PKPDG---PGGGPGGSHMGGNYGDDRRGGRGGYDRGGY------RGRGGD---------- 490
Query: 161 PIRGRGGLGRGRGGRGRGMGRGDG-FDSRGKREFDR 195
RGG GRGG RG G G G DSRG+ DR
Sbjct: 491 ----RGGFRGGRGGGDRG-GFGPGKMDSRGEHRQDR 521
Score = 29.6 bits (65), Expect = 5.1
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 361 DLGRPGRGGRGGRGGRGRGGRPNRGS 386
D G GRGG GG GG G GG NR S
Sbjct: 212 DRGGRGRGGSGGGGGGGGGGY-NRSS 236
Score = 29.6 bits (65), Expect = 5.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 358 NFGDLGRPGRGGRGGRGGRGRGG 380
N+GD R GRGG G RGRGG
Sbjct: 467 NYGDDRRGGRGGYDRGGYRGRGG 489
Score = 29.3 bits (64), Expect = 6.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 359 FGDLGRPGRGGRGGRGGRGRGGRPNRGS 386
+G+ + G GG GG G + RGGR GS
Sbjct: 194 YGNQDQSGGGGSGGYGQQDRGGRGRGGS 221
Score = 28.9 bits (63), Expect = 8.8
Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 363 GRPGRGGRGG--RGGRGR-GGRPNRGSRTD 389
GR GRGG GG RGG + GG ++GSR D
Sbjct: 247 GRGGRGGMGGSDRGGFNKFGGPRDQGSRHD 276
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 44.3 bits (103), Expect = 2e-04
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 12/179 (6%)
Query: 42 GGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVVDKKEETQPPVAL 101
G G G K +A++ + N G+ K+ K++ + G + ++
Sbjct: 1562 GDGREPRTGIKRKLLSASEEDENMGGEDKEKKETKEKSHLSTSESGELGSSLSSESTCGS 1621
Query: 102 KKEGIRRVGRRPDQQLQGE---GKIIDRRPERRPPRER-RFEKPLEEKGEGGEFSVDR-P 156
+ R + G+ K I RP+R+ ++ ++ + +G GG R
Sbjct: 1622 DSDS-ESTSRTDQDYVDGDHDYSKFIQTRPKRKLRKQHGNGKRNWKTRGTGGRGRWGRWG 1680
Query: 157 IIDRPIRGRGGLG---RGRGG---RGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSG 209
R RGRGG G RGRGG RGRG GRG SRG R +D + +SG
Sbjct: 1681 RWSRGGRGRGGRGRGSRGRGGGGTRGRGRGRGGRGASRGATRAKRARIADDEFDTMFSG 1739
Score = 37.7 bits (86), Expect = 0.019
Identities = 20/28 (71%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 360 GDLGRPGRGGRGGRGGRGRGGRPNRGSR 387
G GR GR GR RGGRGRGGR RGSR
Sbjct: 1671 GGRGRWGRWGRWSRGGRGRGGR-GRGSR 1697
Score = 33.5 bits (75), Expect = 0.36
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 359 FGDLGRPGRGGRGGRGGRGRGGRPNRGSRT 388
+G GR RGGRG RGGRGRG R G T
Sbjct: 1676 WGRWGRWSRGGRG-RGGRGRGSRGRGGGGT 1704
Score = 30.8 bits (68), Expect = 2.3
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 360 GDLGRPGRGGRGGRGGRGRG-GRPNRGSRTDKSSASAPDVDDPE 402
G GR R GRGG G RGRG GR RG+ + A + D E
Sbjct: 1690 GGRGRGSR-GRGGGGTRGRGRGRGGRGASRGATRAKRARIADDE 1732
Score = 28.9 bits (63), Expect = 8.8
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 363 GRPGRGGRG--GRGGRGRGGR-PNRGSRTDKSSASAPDVDD 400
G GRGG G GR GRGRGGR +RG+ K + A D D
Sbjct: 1695 GSRGRGGGGTRGR-GRGRGGRGASRGATRAKRARIADDEFD 1734
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 42.7 bits (99), Expect = 6e-04
Identities = 53/206 (25%), Positives = 76/206 (36%), Gaps = 35/206 (16%)
Query: 35 ENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQL--------RKESQKDRKNPLPPSV 86
+N + GG G K+ AAA T G+Q RK+ ++ K P
Sbjct: 314 QNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKA 373
Query: 87 GVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKG 146
K K+G+R RR G+G+ ++P + PR RR +K K
Sbjct: 374 SAAGAKSRGGGD----KKGLREAKRR------GDGR---KKPRWQNPR-RRAQKAPAAKP 419
Query: 147 EGGEFSVDRPIIDRPIRGRGGLGRGRGGR--------GRGMGRGDGFDSRGKREFDRHSG 198
GG R + + RGG R GG+ R G +SRG ++ R
Sbjct: 420 RGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKA 479
Query: 199 SDRSSFSHYSGLKHEDKRGGSGSHNW 224
S + S GLK SG + W
Sbjct: 480 SAAGTKSRGGGLKSH-----SGKNLW 500
Score = 38.1 bits (87), Expect = 0.014
Identities = 49/208 (23%), Positives = 71/208 (34%), Gaps = 44/208 (21%)
Query: 43 GGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQ-----KDRKNPL--------------- 82
GGG PG + AA ++ S GK+ ++ K RK P
Sbjct: 589 GGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWA 648
Query: 83 --PPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEK 140
S G K+ Q P A E + R+ PR RR
Sbjct: 649 TGATSRGSGGKQPRWQKPAAAGSES------------SAAAAVGQEAEARKKPRRRR--- 693
Query: 141 PLEEKGEGGEFSVDRPIIDRPIRGRGG---LGRGRGGRGRGMGRGDGFDSRGKREFDRHS 197
+ +G+GG+ + + P + RG LG+ RGG G G SRG S
Sbjct: 694 -AKSRGDGGQ---NAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRS 749
Query: 198 GSDRSSFSHYSGLKHEDKRGGSGSHNWG 225
G ++ + G + +RGG G
Sbjct: 750 GKKAAASKSHGGGGAKRRRGGGAKSRSG 777
Score = 35.0 bits (79), Expect = 0.12
Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 40/213 (18%)
Query: 38 KKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQKDR------------KNPLPPS 85
+K A GV G + +AAA + +GK+ R+ K R K+ +
Sbjct: 158 QKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFGKT 217
Query: 86 VGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEK 145
G KK P A + R G++P +Q + K R +K L +
Sbjct: 218 RGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQ 277
Query: 146 GE----------GGEFSVDRPIIDRPIRGRGGLG-RGRGGRGRGMGRGDGFDSRGKREFD 194
G+ G + ++P +GRGG G + GG+ GRG GK+
Sbjct: 278 GQNAALAGAKRRGAATAGEKP----AAKGRGGRGPKSLGGQNPRWGRG------GKKPRR 327
Query: 195 RHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTV 227
R + +++ + KRGG G V
Sbjct: 328 RGQKATKAAAA-------GTKRGGGGQQKAAVV 353
Score = 30.4 bits (67), Expect = 3.0
Identities = 48/183 (26%), Positives = 61/183 (33%), Gaps = 30/183 (16%)
Query: 32 KAAENKKKEAGGGGVGGPGAKSAAQAAAQTNS-NAAGKQLRKESQK----DRKNP---LP 83
+A ++ +K AG GG G AAA T S G++ R+ QK K P
Sbjct: 84 EARQHWQKAAGAGGAENRGGGEQKAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQ 143
Query: 84 PSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEG--KIIDRRPERRPPRER----- 136
S K A G++ G Q+ G ++P RR + R
Sbjct: 144 KSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDK 203
Query: 137 ----RFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGG-------RGRGMGRGDGF 185
R K K GG R RP GG RGG R RG G
Sbjct: 204 KGRQREAKSRFGKTRGGRRKKHR----RPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGG 259
Query: 186 DSR 188
SR
Sbjct: 260 KSR 262
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 41.2 bits (95), Expect = 0.002
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 164 GRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSH 222
GRGG G GRGGRG G+G G+ RG + + H G + G ++ G G H
Sbjct: 460 GRGGRG-GRGGRGGRAGQGGGWGGRGSQNY--HQGGQFEQHFQHGGYQYNHSGFGQGRH 515
Score = 35.0 bits (79), Expect = 0.12
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 363 GRPGRGGRGGRGGRG--RGGRPNRGSR 387
GR GRGGRGGRGGR GG RGS+
Sbjct: 460 GRGGRGGRGGRGGRAGQGGGWGGRGSQ 486
Score = 33.1 bits (74), Expect = 0.47
Identities = 18/27 (66%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
Query: 360 GDLGRPGRGGRGGRGGR-GRGGRPNRG 385
GD G GGRGGRGGR GRGGR +G
Sbjct: 455 GDRG----GGRGGRGGRGGRGGRAGQG 477
Score = 30.0 bits (66), Expect = 3.9
Identities = 37/149 (24%), Positives = 50/149 (33%), Gaps = 30/149 (20%)
Query: 109 VGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGE--GGEFSVDRPIIDRP----- 161
+GR PD+ G I+ P PP ++R + P ++ G GG +
Sbjct: 299 MGRVPDRG--GRPNEIEPPPPEMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQ 356
Query: 162 ---IRGRGGLGRGRGGRGR-----------GMGRGDGFDSRGKREFDRHSGSDRSSFSH- 206
GRGG G G GR G G G G+ G R+ G S
Sbjct: 357 GGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSG 416
Query: 207 ------YSGLKHEDKRGGSGSHNWGTVKD 229
Y G + GSG G +D
Sbjct: 417 GYQGGGYGGFQTSSSYTGSGYQGGGYQQD 445
Score = 28.9 bits (63), Expect = 8.8
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 363 GRPGRGGRGGRGGRGRGGR------PNRGSRTDKSSASAPDVDD 400
G GGRGGRGG GGR ++G TD S D
Sbjct: 353 GHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSGGGGGYQD 396
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 40.8 bits (94), Expect = 0.002
Identities = 59/239 (24%), Positives = 87/239 (36%), Gaps = 17/239 (7%)
Query: 31 LKAAENKKKEAGGGGVGGPGAKSAA-QAAAQTNSNAAGKQLRKESQKDRKNPLPPSVGVV 89
L E +K A G G GG G ++ +T R+ + P G +
Sbjct: 893 LTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSSRRGIPPEEPGAPPRRAGPI 952
Query: 90 DK-----KEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEE 144
K K E PP L++ +PD +GK+ P+ PP P
Sbjct: 953 KKPPPPTKVEELPPKPLEQGDETPKPPKPDPLKITKGKL--GGPKETPPNGNLSPAPRLR 1010
Query: 145 KGEGGEFSVDRPIIDRPIRGRGG---LGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDR 201
+ ++S +R + RGRG RGRG RG GRG G SR R + G D
Sbjct: 1011 R----DYSYER-VGPTSCRGRGRGEYFARGRGFRGTYGGRGRGARSREFRSYREFRGDDG 1065
Query: 202 SSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLDQSNVTEETPE 260
G H G + + E E PK +++ S S+ +S++ E
Sbjct: 1066 RG-GGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGSETHESDLAPSDKE 1123
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/42 (57%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 366 GRGGRGGRGGRGRGGRPNRGSRTDK----SSASAPDVDDPEA 403
GRG RG RGGRG GG P RGSR + + ASAP DD +A
Sbjct: 56 GRGFRGARGGRGGGGAP-RGSRREPGGWGAGASAPVEDDSDA 96
Score = 37.4 bits (85), Expect = 0.025
Identities = 30/71 (42%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 126 RRPER-RPPRERRFEKP----LEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMG 180
RRP R RP +R E+P +G GG D GR G GRGRG RG G
Sbjct: 13 RRPGRGRPGGDRHSERPGAAAAVARGGGGGGGGDGG-------GRRGRGRGRGFRGARGG 65
Query: 181 RGDGFDSRGKR 191
RG G RG R
Sbjct: 66 RGGGGAPRGSR 76
Score = 32.3 bits (72), Expect = 0.79
Identities = 41/138 (29%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 130 RRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRG--RGMGRGDGFDS 187
RRP R R GG+ +RP + RGG G G G G RG GRG GF
Sbjct: 13 RRPGRGR----------PGGDRHSERPGAAAAV-ARGGGGGGGGDGGGRRGRGRGRGF-- 59
Query: 188 RGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYN-- 245
RG R G+ R S G + T +E E Y +++I N
Sbjct: 60 RGARGGRGGGGAPRGSRREPGGWGAGASAPVEDDSDAETYGEENDEQGNYSKRKIVSNWD 119
Query: 246 -YSDLDQSNVTEETPEGE 262
Y D+++ V E+ E +
Sbjct: 120 RYQDIEK-EVNNESGESQ 136
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 363 GRPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAP 396
G G G GGR GRGR GR RG+R + AP
Sbjct: 40 GGGGGGDGGGRRGRGR-GRGFRGARGGRGGGGAP 72
Score = 29.6 bits (65), Expect = 5.1
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 364 RPGRGGRGGRGGRGRGGRPNRGSRTDKSSASA 395
R RGGRG R GRGR G R ++A A
Sbjct: 5 RGARGGRGRRPGRGRPGGDRHSERPGAAAAVA 36
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 18/66 (27%)
Query: 128 PERRPPRERRFEKPLEEKG--EGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGF 185
P + P +R +P EKG GG GRGG G GRGG GRG GRG GF
Sbjct: 148 PYKLLPLQRFLPRPPGEKGPPRGG--------------GRGGRGGGRGGGGRGGGRGGGF 193
Query: 186 DSRGKR 191
RG R
Sbjct: 194 --RGGR 197
Score = 33.5 bits (75), Expect = 0.36
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 360 GDLGRPGRGGRGGRGGRGRGGRPNRGSR 387
G+ G P GGRGGRGG GRGG G R
Sbjct: 163 GEKGPPRGGGRGGRGG-GRGGGGRGGGR 189
Score = 30.4 bits (67), Expect = 3.0
Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 22/69 (31%)
Query: 131 RPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRG----------MG 180
RPP E+ + G GG RG GG G GRGG RG G
Sbjct: 160 RPPGEKGPPRGGGRGGRGGG------------RGGGGRGGGRGGGFRGGRGGGGGGFRGG 207
Query: 181 RGDGFDSRG 189
RG GF RG
Sbjct: 208 RGGGFRGRG 216
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 360 GDLGRPGRGG-RGG--RGGRGRGGRPNRGSR 387
G G GRGG RGG RGGRG GG RG R
Sbjct: 178 GGRGGGGRGGGRGGGFRGGRGGGGGGFRGGR 208
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 18/66 (27%)
Query: 128 PERRPPRERRFEKPLEEKG--EGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGMGRGDGF 185
P + P +R +P EKG GG GRGG G GRGG GRG GRG GF
Sbjct: 148 PYKLLPLQRFLPRPPGEKGPPRGG--------------GRGGRGGGRGGGGRGGGRGGGF 193
Query: 186 DSRGKR 191
RG R
Sbjct: 194 --RGGR 197
Score = 33.5 bits (75), Expect = 0.36
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 360 GDLGRPGRGGRGGRGGRGRGGRPNRGSR 387
G+ G P GGRGGRGG GRGG G R
Sbjct: 163 GEKGPPRGGGRGGRGG-GRGGGGRGGGR 189
Score = 30.4 bits (67), Expect = 3.0
Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 22/69 (31%)
Query: 131 RPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRG----------MG 180
RPP E+ + G GG RG GG G GRGG RG G
Sbjct: 160 RPPGEKGPPRGGGRGGRGGG------------RGGGGRGGGRGGGFRGGRGGGGGGFRGG 207
Query: 181 RGDGFDSRG 189
RG GF RG
Sbjct: 208 RGGGFRGRG 216
Score = 30.4 bits (67), Expect = 3.0
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 360 GDLGRPGRGG-RGG--RGGRGRGGRPNRGSR 387
G G GRGG RGG RGGRG GG RG R
Sbjct: 178 GGRGGGGRGGGRGGGFRGGRGGGGGGFRGGR 208
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 40.4 bits (93), Expect = 0.003
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 51 AKSAAQAAAQTNSNAAGKQLRK--ESQKDRKNPLPPSVGVVDKKEETQPPVALKKEG--- 105
A+SA+ +++ ++S+ + ++K +K + PLP G K E +PP + +
Sbjct: 251 ARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPE--RPPSSSSSDSDSD 308
Query: 106 -IRRVG---------------RRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGG 149
+ R+ RR +Q + ++ ++ E + R R ++ E+G GG
Sbjct: 309 EVDRISEWKRRDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAERGSGG 368
Query: 150 EFSVDRPIIDRPIRGRGGLGRGRG 173
+ D P++ RG GRGRG
Sbjct: 369 SSGDELREDDEPVKKRGRKGRGRG 392
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 40.4 bits (93), Expect = 0.003
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 23/144 (15%)
Query: 51 AKSAAQAAAQTNSNAAGKQLRK--ESQKDRKNPLPPSVGVVDKKEETQPPVALKKEG--- 105
A+SA+ +++ ++S+ + ++K +K + PLP G K E +PP + +
Sbjct: 251 ARSASSSSSSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPE--RPPSSSSSDSDSD 308
Query: 106 -IRRVG---------------RRPDQQLQGEGKIIDRRPERRPPRERRFEKPLEEKGEGG 149
+ R+ RR +Q + ++ ++ E + R R ++ E+G GG
Sbjct: 309 EVDRISEWKRRDEARRRELEARRRREQEEELRRLREQEKEEKERRRERADRGEAERGSGG 368
Query: 150 EFSVDRPIIDRPIRGRGGLGRGRG 173
+ D P++ RG GRGRG
Sbjct: 369 SSGDELREDDEPVKKRGRKGRGRG 392
>gi|7657138 golgi integral membrane protein 4 [Homo sapiens]
Length = 696
Score = 39.7 bits (91), Expect = 0.005
Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 188 RGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYS 247
+G RE D S +DR++ ED +N G +DE E+ + ++ +
Sbjct: 529 QGPREADPESEADRAAV--------EDINPADDPNNQG--EDEFEEAEQVREENLPDENE 578
Query: 248 DLDQSNVTEETPEGEEHHPVADTENKENE------VEEVKEEGPKEMTLDEWKAIQ-NKD 300
+ QSN +E E EEH +A +++ + EE +EE +++T ++ + ++ N +
Sbjct: 579 EQKQSNQKQENTEVEEHLVMAGNPDQQEDNVDEQYQEEAEEEVQEDLTEEKKRELEHNAE 638
Query: 301 RAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAED 337
E + ++ DG+ ++ ++ K E H E+
Sbjct: 639 ETYGENDENTDDKNNDGEEQEVRDDNRPKGREEHYEE 675
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 39.3 bits (90), Expect = 0.006
Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 38/162 (23%)
Query: 48 GPGAKSAAQAAAQTNSNAAGKQL------RKESQKDRKNPLP------PSVGVVDKKEET 95
GPG AAQA A+ A + R R P+P P+ + +
Sbjct: 48 GPGRVRAAQARARRGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSA 107
Query: 96 QPPVALKKEGIRRVGRRP--------DQQLQGEGKIIDRRPERR----PPRERRFEKPLE 143
+ P+A VGR P + G+ + D RP R PP E+R LE
Sbjct: 108 ERPLAQAPSSSASVGRAPGAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRLLLE 167
Query: 144 ------EKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRGM 179
+ GE GE D P GR G GG GRG+
Sbjct: 168 GGSAQPQDGEDGE--------DAPRPGRVETGTQTGGDGRGV 201
>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
[Homo sapiens]
Length = 320
Score = 38.9 bits (89), Expect = 0.008
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 163 RGRGGLGRGRGGRGRG------MGRGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKR 216
RGR G G GGRG G GRG F RG R G S Y+G ++
Sbjct: 194 RGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSN 253
Query: 217 -GGSGSHN 223
GG GS+N
Sbjct: 254 FGGGGSYN 261
Score = 32.7 bits (73), Expect = 0.61
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)
Query: 146 GEGGEFSVDRPIIDRPIRGRGGLG--RGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSS 203
G GG FS GRGG G RG GG G G GDG++ G + G +
Sbjct: 217 GRGGNFS-----------GRGGFGGSRGGGGYG---GSGDGYNGFGNDGSNFGGGGSYND 262
Query: 204 FSHYS 208
F +Y+
Sbjct: 263 FGNYN 267
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 38.9 bits (89), Expect = 0.008
Identities = 70/280 (25%), Positives = 99/280 (35%), Gaps = 56/280 (20%)
Query: 16 RFDQLFDDESDPFEVLKAAENKKKEAGGGGVGGPGAKSAAQAAAQTNSNAAGKQLRKESQ 75
R D +FDDE P A +KK G SAA ++ + G QLR ES
Sbjct: 35 RDDAVFDDEVAPNAASDNASAEKKVKSPRAALDGGVASAASPESKPSPGTKG-QLRGES- 92
Query: 76 KDRKNPLPPSVGVVDKKEETQPPVALKKEGIRRVGRRPDQQLQGEGKIIDRRPERRPPRE 135
DR PP+ +K ++ A+ P G P +R P
Sbjct: 93 -DRSKQPPPASSPTKRKGRSRALEAV-----------PAPPASGPRAPAKESPPKRVPDP 140
Query: 136 RRFEK-PLEEKGEGGEFSVDR--PIID-------RPIRGRGGL-----GRGRGGRGRGMG 180
K E GE ++ R P+ +P RG L GR GGR R +G
Sbjct: 141 SPVTKGTAAESGEEAARAIPRELPVKSSSLLPEIKPEHKRGPLPNHFNGRAEGGRSRELG 200
Query: 181 RGDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQK 240
R G + G + D GLK + G S T K L PK+++
Sbjct: 201 RAAG--APGASDAD--------------GLKPRNHFGVGRS--TVTTKVTLPAKPKHVEL 242
Query: 241 QISYNYSDLDQSNVTEETPEGEEHHPVADTENKENEVEEV 280
+ +LD G EH+P + +K N ++
Sbjct: 243 NLK-TPKNLDSL--------GNEHNPFSQPVHKGNTATKI 273
>gi|24497501 forkhead box A1 [Homo sapiens]
Length = 472
Score = 38.5 bits (88), Expect = 0.011
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 364 RPGRGGRGGRGGRGRGGRPNRGSRTDKSSASAPDVDDP 401
+PG GG GG G G G + SR D S AS P D P
Sbjct: 271 QPGAGGGGGSGSGGSGAKGGPESRKDPSGASNPSADSP 308
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.1 bits (87), Expect = 0.014
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 119 GEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRG 178
GE + RRP R PP RR P G P++ R GR G RGG G
Sbjct: 105 GEERSQPRRPRRPPPAPRR---PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWS 161
Query: 179 MGR-----GDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKR 216
G G G S G F GS R F SG + E +R
Sbjct: 162 HGHTARVGGTGDSSAGLTTF---PGSSRGGF---SGREEEPRR 198
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.1 bits (87), Expect = 0.014
Identities = 35/103 (33%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 119 GEGKIIDRRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRGRG 178
GE + RRP R PP RR P G P++ R GR G RGG G
Sbjct: 105 GEERSQPRRPRRPPPAPRR---PRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWS 161
Query: 179 MGR-----GDGFDSRGKREFDRHSGSDRSSFSHYSGLKHEDKR 216
G G G S G F GS R F SG + E +R
Sbjct: 162 HGHTARVGGTGDSSAGLTTF---PGSSRGGF---SGREEEPRR 198
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 38.1 bits (87), Expect = 0.014
Identities = 37/88 (42%), Positives = 39/88 (44%), Gaps = 32/88 (36%)
Query: 125 DRRPERRPP--RERR-----FEKPLE-EKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRG 176
D ERRP ERR F PL +G GG RGRGGLG RGGRG
Sbjct: 376 DDNRERRPTWAEERRLNAETFGIPLRPNRGRGG------------YRGRGGLGF-RGGRG 422
Query: 177 RGMGRGDGFDS-----------RGKREF 193
RG GRG F + RG REF
Sbjct: 423 RGGGRGGTFTAPRGFRGGFRGGRGGREF 450
Score = 37.4 bits (85), Expect = 0.025
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 269 DTENKENEVEEVKEEGPKEMTLDE------WKAIQNKDRAKVEFNIRKPNEGADGQWKKG 322
++ N + EE+ E ++ L E K + +D+ + + AD + G
Sbjct: 299 ESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLG 358
Query: 323 FVLHKSKSEEAHAEDSVMDHHFRKP---------ANDITSQLEINFGDLGRPGRGGRGGR 373
+ K++ S D+ R+P A L N G G GRGG G R
Sbjct: 359 PNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFR 418
Query: 374 GGRGRGG 380
GGRGRGG
Sbjct: 419 GGRGRGG 425
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 38.1 bits (87), Expect = 0.014
Identities = 37/88 (42%), Positives = 39/88 (44%), Gaps = 32/88 (36%)
Query: 125 DRRPERRPP--RERR-----FEKPLE-EKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRG 176
D ERRP ERR F PL +G GG RGRGGLG RGGRG
Sbjct: 376 DDNRERRPTWAEERRLNAETFGIPLRPNRGRGG------------YRGRGGLGF-RGGRG 422
Query: 177 RGMGRGDGFDS-----------RGKREF 193
RG GRG F + RG REF
Sbjct: 423 RGGGRGGTFTAPRGFRGGFRGGRGGREF 450
Score = 37.4 bits (85), Expect = 0.025
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 269 DTENKENEVEEVKEEGPKEMTLDE------WKAIQNKDRAKVEFNIRKPNEGADGQWKKG 322
++ N + EE+ E ++ L E K + +D+ + + AD + G
Sbjct: 299 ESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLG 358
Query: 323 FVLHKSKSEEAHAEDSVMDHHFRKP---------ANDITSQLEINFGDLGRPGRGGRGGR 373
+ K++ S D+ R+P A L N G G GRGG G R
Sbjct: 359 PNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFR 418
Query: 374 GGRGRGG 380
GGRGRGG
Sbjct: 419 GGRGRGG 425
>gi|169217514 PREDICTED: Inactive ubiquitin carboxyl-terminal
hydrolase 17-like protein 7 [Homo sapiens]
Length = 530
Score = 37.7 bits (86), Expect = 0.019
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 278 EEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKG-FVLHKS------KS 330
E + E +E TLD WK Q +++ K EFN+RK +G V+H+S K+
Sbjct: 422 EHLVERATQESTLDHWKFPQKQNKTKPEFNVRK----VEGTLPPNVLVIHQSKYKCGMKN 477
Query: 331 EEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGR 381
+ S+++ KP T Q +N G L R +G R
Sbjct: 478 HHPEQQSSLLNLSSTKP----TDQESMNTGTLASLQGSTRRSKGNNKHSKR 524
>gi|169217654 PREDICTED: similar to deubiquitinating enzyme DUB1
[Homo sapiens]
Length = 530
Score = 37.7 bits (86), Expect = 0.019
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 278 EEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 310
E + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 422 EHLVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239758075 PREDICTED: similar to deubiquitinating enzyme DUB1
[Homo sapiens]
Length = 530
Score = 37.7 bits (86), Expect = 0.019
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 278 EEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRK 310
E + E +E TLD WK +Q +++ K EFN+RK
Sbjct: 422 EHLVERATQESTLDHWKFLQEQNKTKPEFNVRK 454
>gi|239749360 PREDICTED: Inactive ubiquitin carboxyl-terminal
hydrolase 17-like protein 7 [Homo sapiens]
Length = 530
Score = 37.7 bits (86), Expect = 0.019
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 278 EEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKG-FVLHKS------KS 330
E + E +E TLD WK Q +++ K EFN+RK +G V+H+S K+
Sbjct: 422 EHLVERATQESTLDHWKFPQKQNKTKPEFNVRK----VEGTLPPNVLVIHQSKYKCGMKN 477
Query: 331 EEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGR 381
+ S+++ KP T Q +N G L R +G R
Sbjct: 478 HHPEQQSSLLNLSSTKP----TDQESMNTGTLASLQGSTRRSKGNNKHSKR 524
>gi|41148616 PREDICTED: Inactive ubiquitin carboxyl-terminal
hydrolase 17-like protein 7 [Homo sapiens]
Length = 530
Score = 37.7 bits (86), Expect = 0.019
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 278 EEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKG-FVLHKS------KS 330
E + E +E TLD WK Q +++ K EFN+RK +G V+H+S K+
Sbjct: 422 EHLVERATQESTLDHWKFPQEQNKTKPEFNVRK----VEGTLPPNVLVIHQSKYKCGMKN 477
Query: 331 EEAHAEDSVMDHHFRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGGR 381
+ S+++ KP T Q +N G L R +G R
Sbjct: 478 HHPEQQSSLLNLSSTKP----TDQESMNTGTLASLQGSTRRSKGNNKHSKR 524
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.134 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,440,548
Number of Sequences: 37866
Number of extensions: 1116927
Number of successful extensions: 9940
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 7439
Number of HSP's gapped (non-prelim): 2273
length of query: 408
length of database: 18,247,518
effective HSP length: 105
effective length of query: 303
effective length of database: 14,271,588
effective search space: 4324291164
effective search space used: 4324291164
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.