Guide to the Human Genome
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Name: C12orf35 Sequence: fasta or formatted (1747aa) NCBI GI: 65507253
Description:

hypothetical protein LOC55196

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         71           2
 C cysteine            1.8         32           2
 D aspartate           4.5         79           2
 E glutamate           6.4        111           3
 F phenylalanine       2.1         36           1
 G glycine             3.3         57           2
 H histidine           2.1         37           2
 I isoleucine          4.1         71           1
 K lysine              9.8        171           4
 L leucine             7.3        127           3
 M methionine          2.3         40           1
 N asparagine          6.8        119           2
 P proline             6.5        113           5
 Q glutamine           8.1        141           3
 R arginine            3.0         52           2
 S serine             12.2        213           3
 T threonine           7.1        124           3
 V valine              6.4        111           2
 W tryptophan          0.5          8           1
 Y tyrosine            1.9         34           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC55196 
BOD1L                 0.010   biorientation of chromosomes in cell division 1-like...
ANKRD12               0.008   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.008   ankyrin repeat domain 12 isoform 1 
CYLC1                 0.008   cylicin, basic protein of sperm head cytoskeleton 1...
GOLGB1                0.007   golgi autoantigen, golgin subfamily b, macrogolgin ...
NIPBL                 0.007   delangin isoform B 
NIPBL                 0.007   delangin isoform A 
EEA1                  0.007   early endosome antigen 1, 162kD 
CCDC88A               0.006   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.006   coiled-coil domain containing 88A isoform 1 
PPIG                  0.006   peptidylprolyl isomerase G 
MUC3A                 0.006   PREDICTED: mucin 3A, intestinal 
RBBP6                 0.006   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.006   retinoblastoma-binding protein 6 isoform 1 
RFX7                  0.006   regulatory factor X domain containing 2 
CENPE                 0.006   centromere protein E 
KTN1                  0.005   kinectin 1 isoform a 
KTN1                  0.005   kinectin 1 isoform a 
RSF1                  0.005   remodeling and spacing factor 1 
GCC2                  0.005   GRIP and coiled-coil domain-containing 2 
ANKRD36               0.005   PREDICTED: ankyrin repeat domain 36 
UACA                  0.005   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.005   uveal autoantigen with coiled-coil domains and ankyr...
HTATSF1               0.004   HIV-1 Tat specific factor 1 
HTATSF1               0.004   HIV-1 Tat specific factor 1 
SYCP1                 0.004   synaptonemal complex protein 1 
SFRS18                0.004   splicing factor, arginine/serine-rich 130 
UTP11L                0.004   UTP11-like, U3 small nucleolar ribonucleoprotein [H...
SFRS18                0.004   splicing factor, arginine/serine-rich 130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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