Guide to the Human Genome
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Name: CCDC75 Sequence: fasta or formatted (259aa) NCBI GI: 167900474
Description:

coiled-coil domain containing 75

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         15           2
 C cysteine            1.9          5           1
 D aspartate           5.8         15           1
 E glutamate          15.8         41           3
 F phenylalanine       1.2          3           1
 G glycine             6.2         16           3
 H histidine           1.5          4           1
 I isoleucine          4.6         12           1
 K lysine             10.4         27           2
 L leucine             9.7         25           2
 M methionine          2.7          7           1
 N asparagine          3.9         10           1
 P proline             2.7          7           1
 Q glutamine           6.9         18           2
 R arginine            6.9         18           2
 S serine              5.8         15           2
 T threonine           1.9          5           1
 V valine              1.9          5           1
 W tryptophan          1.2          3           1
 Y tyrosine            3.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 75 
AGGF1                 0.056   angiogenic factor VG5Q 
TCHH                  0.054   trichohyalin 
GPATCH8               0.050   G patch domain containing 8 
LOC100133599          0.046   PREDICTED: hypothetical protein 
BAT2D1                0.044   HBxAg transactivated protein 2 
RBM10                 0.044   RNA binding motif protein 10 isoform 1 
RBM10                 0.044   RNA binding motif protein 10 isoform 2 
LOC283685             0.040   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TFIP11                0.040   tuftelin interacting protein 11 
TFIP11                0.040   tuftelin interacting protein 11 
SF4                   0.040   splicing factor 4 
SFRS14                0.040   splicing factor, arginine/serine-rich 14 
SFRS14                0.040   splicing factor, arginine/serine-rich 14 
NKRF                  0.038   transcription factor NRF 
DNAJC21               0.038   DnaJ homology subfamily A member 5 isoform 1 
DNAJC21               0.038   DnaJ homology subfamily A member 5 isoform 2 
MAP1B                 0.036   microtubule-associated protein 1B 
LOC645202             0.034   PREDICTED: hypothetical protein LOC645202 
LOC100133758          0.034   PREDICTED: hypothetical protein, partial 
CNTLN                 0.034   centlein isoform 1 
LOC727832             0.032   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.032   golgi autoantigen, golgin subfamily a-like 
GIGYF2                0.032   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.032   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.032   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.032   GRB10 interacting GYF protein 2 isoform b 
LOC283685             0.032   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC440243             0.032   PREDICTED: Putative golgin subfamily A member 6-lik...
BECN1                 0.032   beclin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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