Guide to the Human Genome
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Name: LOC389217 Sequence: fasta or formatted (309aa) NCBI GI: 169167074
Description:

PREDICTED: similar to SET translocation

Referenced in:

HLA and Related Proteins

Other entries for this name:
alt prot [296aa] PREDICTED: similar to SET translocation
alt mRNA [309aa] PREDICTED: similar to SET translocation
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9          9           1
 C cysteine            0.3          1           1
 D aspartate           9.1         28           3
 E glutamate          15.2         47           5
 F phenylalanine       3.9         12           2
 G glycine             5.5         17           1
 H histidine           2.6          8           1
 I isoleucine          3.9         12           1
 K lysine              7.8         24           2
 L leucine             8.7         27           2
 M methionine          1.0          3           1
 N asparagine          4.5         14           1
 P proline             5.2         16           3
 Q glutamine           4.9         15           2
 R arginine            5.2         16           2
 S serine              7.1         22           2
 T threonine           3.9         12           2
 V valine              4.5         14           2
 W tryptophan          1.6          5           1
 Y tyrosine            2.3          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SET translocation 
LOC389217             1.000   PREDICTED: similar to SET translocation 
LOC389217             0.941   PREDICTED: similar to SET translocation 
SET                   0.765   SET translocation (myeloid leukemia-associated) iso...
LOC646817             0.759   PREDICTED: similar to SET translocation 
LOC646817             0.759   PREDICTED: similar to SET translocation 
LOC646817             0.759   PREDICTED: similar to SET translocation 
SET                   0.685   SET translocation (myeloid leukemia-associated) iso...
TSPYL5                0.197   TSPY-like 5 
TSPYL2                0.190   TSPY-like 2 
TSPYL1                0.189   TSPY-like 1 
TSPYL4                0.186   TSPY-like 4 
TSPYL6                0.171   TSPY-like 6 
LOC100289087          0.166   PREDICTED: hypothetical protein XP_002344239 
LOC728395             0.166   PREDICTED: similar to testis specific protein, Y-li...
TSPY2                 0.166   testis specific protein, Y-linked 2 
LOC728403             0.166   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC728132             0.164   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.164   testis specific protein, Y-linked 3 
TSPY1                 0.163   testis specific protein, Y-linked 1 
NAP1L1                0.077   nucleosome assembly protein 1-like 1 
NAP1L1                0.077   nucleosome assembly protein 1-like 1 
NAP1L4                0.064   nucleosome assembly protein 1-like 4 
MYT1L                 0.046   myelin transcription factor 1-like 
YTHDC1                0.046   splicing factor YT521-B isoform 2 
YTHDC1                0.046   splicing factor YT521-B isoform 1 
HUWE1                 0.044   HECT, UBA and WWE domain containing 1 
EIF5B                 0.043   eukaryotic translation initiation factor 5B 
MYT1                  0.041   myelin transcription factor 1 
ANP32B                0.041   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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