Guide to the Human Genome
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Name: LOC646817 Sequence: fasta or formatted (302aa) NCBI GI: 239752832
Description:

PREDICTED: similar to SET translocation

Referenced in:

HLA and Related Proteins

Other entries for this name:
alt mRNA [302aa] PREDICTED: similar to SET translocation
alt mRNA [302aa] PREDICTED: similar to SET translocation
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3         10           1
 C cysteine            0.0          0           0
 D aspartate          12.6         38           8
 E glutamate          16.9         51           3
 F phenylalanine       5.0         15           2
 G glycine             6.0         18           2
 H histidine           2.0          6           1
 I isoleucine          4.0         12           1
 K lysine              8.3         25           3
 L leucine             6.3         19           2
 M methionine          1.0          3           1
 N asparagine          3.6         11           1
 P proline             6.0         18           3
 Q glutamine           4.6         14           2
 R arginine            3.0          9           1
 S serine              6.6         20           2
 T threonine           3.3         10           2
 V valine              4.0         12           1
 W tryptophan          1.3          4           1
 Y tyrosine            2.3          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to SET translocation 
LOC646817             1.000   PREDICTED: similar to SET translocation 
LOC646817             1.000   PREDICTED: similar to SET translocation 
SET                   0.875   SET translocation (myeloid leukemia-associated) iso...
LOC389217             0.770   PREDICTED: similar to SET translocation 
LOC389217             0.770   PREDICTED: similar to SET translocation 
SET                   0.763   SET translocation (myeloid leukemia-associated) iso...
LOC389217             0.747   PREDICTED: similar to SET translocation 
TSPYL5                0.233   TSPY-like 5 
TSPYL2                0.217   TSPY-like 2 
TSPYL1                0.212   TSPY-like 1 
TSPYL4                0.207   TSPY-like 4 
TSPYL6                0.197   TSPY-like 6 
LOC100289087          0.193   PREDICTED: hypothetical protein XP_002344239 
LOC728395             0.193   PREDICTED: similar to testis specific protein, Y-li...
TSPY2                 0.193   testis specific protein, Y-linked 2 
LOC728403             0.193   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC728132             0.192   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.192   testis specific protein, Y-linked 3 
TSPY1                 0.190   testis specific protein, Y-linked 1 
NAP1L1                0.098   nucleosome assembly protein 1-like 1 
NAP1L1                0.098   nucleosome assembly protein 1-like 1 
NAP1L4                0.083   nucleosome assembly protein 1-like 4 
MYT1L                 0.062   myelin transcription factor 1-like 
NCL                   0.058   nucleolin 
ANP32B                0.058   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
ANP32E                0.053   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.053   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.053   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
MTERFD2               0.053   MTERF domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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