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Search of human proteins with 62953129
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62953129 macrophage erythroblast attacher isoform 2 [Homo
sapiens]
(355 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62953129 macrophage erythroblast attacher isoform 2 [Homo sap... 711 0.0
gi|62953131 macrophage erythroblast attacher isoform 1 [Homo sap... 691 0.0
gi|21362098 required for meiotic nuclear division 5 homolog B [H... 50 4e-06
gi|12232469 required for meiotic nuclear division 5 homolog A [H... 47 3e-05
gi|157785668 coiled-coil domain containing 39 [Homo sapiens] 35 0.10
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 33 0.39
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 33 0.39
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 33 0.39
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 33 0.39
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 33 0.39
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 32 0.66
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 32 0.87
gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens] 32 0.87
gi|81295809 pericentrin [Homo sapiens] 32 1.1
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 32 1.1
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 32 1.1
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 32 1.1
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 32 1.1
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 32 1.1
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 32 1.1
gi|41281753 NIMA-related kinase 11 isoform 2 [Homo sapiens] 31 1.9
gi|225637562 NIMA-related kinase 11 isoform 3 [Homo sapiens] 31 1.9
gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens] 31 1.9
gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens] 31 1.9
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 31 1.9
gi|47519798 neutrophil cytosolic factor 4 isoform 1 [Homo sapiens] 30 2.5
gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis... 30 2.5
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 30 2.5
gi|5902142 DNA polymerase sigma [Homo sapiens] 30 3.3
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 29 5.6
>gi|62953129 macrophage erythroblast attacher isoform 2 [Homo
sapiens]
Length = 355
Score = 711 bits (1834), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSG 60
MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSG
Sbjct: 1 MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSG 60
Query: 61 CPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVW 120
CPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVW
Sbjct: 61 CPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVW 120
Query: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLEFSLRIQEFIELIRQNKRLDAVRHA 180
KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLEFSLRIQEFIELIRQNKRLDAVRHA
Sbjct: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLEFSLRIQEFIELIRQNKRLDAVRHA 180
Query: 181 RKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLG 240
RKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLG
Sbjct: 181 RKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLG 240
Query: 241 NNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCK 300
NNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCK
Sbjct: 241 NNSVFTLTLQAGLSAIKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCK 300
Query: 301 ISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM 355
ISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM
Sbjct: 301 ISGDVMNENNPPMMLPNGYVYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM 355
>gi|62953131 macrophage erythroblast attacher isoform 1 [Homo
sapiens]
Length = 396
Score = 691 bits (1782), Expect = 0.0
Identities = 355/396 (89%), Positives = 355/396 (89%), Gaps = 41/396 (10%)
Query: 1 MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSG 60
MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSG
Sbjct: 1 MAVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSG 60
Query: 61 CPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVW 120
CPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVW
Sbjct: 61 CPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVW 120
Query: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE---------------------------- 152
KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE
Sbjct: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIEDLVNIEMFLTAKEVEESLERRETATCLA 180
Query: 153 -------------SCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAM 199
SCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAM
Sbjct: 181 WCHDNKSRLRKMKSCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAM 240
Query: 200 GMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTP 259
GMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTP
Sbjct: 241 GMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTP 300
Query: 260 QCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNENNPPMMLPNGY 319
QCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNENNPPMMLPNGY
Sbjct: 301 QCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNENNPPMMLPNGY 360
Query: 320 VYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM 355
VYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM
Sbjct: 361 VYGYNSLLSIRQDDKVVCPRTKEVFHFSQAEKVYIM 396
>gi|21362098 required for meiotic nuclear division 5 homolog B [Homo
sapiens]
Length = 393
Score = 49.7 bits (117), Expect = 4e-06
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 4/191 (2%)
Query: 151 IESCLEFSLRIQEFIELIRQN--KRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPP-D 207
+ S LEF L FI L+ K+L+A+ +AR HF E++ MG L +
Sbjct: 188 LNSSLEFKLHRLHFIRLLAGGPAKQLEALSYAR-HFQPFARLHQREIQVMMGSLVYLRLG 246
Query: 208 THISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSAIKTPQCYKEDGS 267
SPY LLD + W + + F D L L S +++ +G A+ K
Sbjct: 247 LEKSPYCHLLDSSHWAEICETFTRDACSLLGLSVESPLSVSFASGCVALPVLMNIKAVIE 306
Query: 268 SKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNENNPPMMLPNGYVYGYNSLL 327
+ + + L M +S C I +++NPP+ L G+V ++L
Sbjct: 307 QRQCTGVWNHKDELPIEIELGMKCWYHSVFACPILRQQTSDSNPPIKLICGHVISRDALN 366
Query: 328 SIRQDDKVVCP 338
+ K+ CP
Sbjct: 367 KLINGGKLKCP 377
>gi|12232469 required for meiotic nuclear division 5 homolog A [Homo
sapiens]
Length = 391
Score = 46.6 bits (109), Expect = 3e-05
Identities = 59/265 (22%), Positives = 100/265 (37%), Gaps = 52/265 (19%)
Query: 122 RKRMDRMMVEHLLRCGYYNTAVKLARQSGIE----------------------------- 152
++ ++ +MVEH R G + A +L ++SG+
Sbjct: 115 QRLLNEVMVEHFFRQGMLDVAEELCQESGLSVDPSQKEPFVELNRILEALKVRVLRPALE 174
Query: 153 -------------SCLEFSLRIQEFIELIR---QNKRLDAVRHARKHFSQAEGSQLDEVR 196
S LEF L FI L+ N+R +A+++A K+F + +++
Sbjct: 175 WAVSNREMLIAQNSSLEFKLHRLYFISLLMGGTTNQR-EALQYA-KNFQPFALNHQKDIQ 232
Query: 197 QAMGMLAF-PPDTHISPYKDLLDPARWRMLIQQFRYDNYRLHQLGNNSVFTLTLQAGLSA 255
MG L + SPY LLD +W + F D L L S +++ AG A
Sbjct: 233 VLMGSLVYLRQGIENSPYVHLLDANQWADICDIFTRDACALLGLSVESPLSVSFSAGCVA 292
Query: 256 IKTPQCYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCA--NSRLVCKISGDVMNENNPPM 313
+ P + C ++L + + +S C I +NNPPM
Sbjct: 293 L--PALINIKAVIEQRQCTGVWNQKDELPIEVDLGKKCWYHSIFACPILRQQTTDNNPPM 350
Query: 314 MLPNGYVYGYNSLLSIRQDDKVVCP 338
L G++ ++L + K+ CP
Sbjct: 351 KLVCGHIISRDALNKMFNGSKLKCP 375
>gi|157785668 coiled-coil domain containing 39 [Homo sapiens]
Length = 941
Score = 35.0 bits (79), Expect = 0.10
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 1 MAVQESAAQLSMTLKVQEYPTLKVPYET---LNKRFRAAQKNIDRETSHVTMVVAELEKT 57
M+V+E A L LK +E +V + F+ AQ+ + ET V++E+E T
Sbjct: 368 MSVEEKATNLEDMLKEEEKDVKEVDVQLNLIKGVLFKKAQE-LQTETMKEKAVLSEIEGT 426
Query: 58 LSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAA 117
S + L+ ++KL K E + ++D + +RR+ LK + + A
Sbjct: 427 RSS-------LKHLNHQLQKLDFETLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQA 479
Query: 118 SVWKRKRMDRMMVEHLLRCGYYNTAVK 144
K + + + E CG T +K
Sbjct: 480 LEAKIVELRKSLEEKKSTCGLLETQIK 506
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 33.1 bits (74), Expect = 0.39
Identities = 40/204 (19%), Positives = 80/204 (39%), Gaps = 27/204 (13%)
Query: 9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCP------ 62
++ + KV+E E +N A ++ ++ E S + + +LE TL+
Sbjct: 912 KIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLAKVEKEKHAT 971
Query: 63 ------------AVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHS 110
+D +++ L + L ++A++ +QAE++ + L++
Sbjct: 972 ENKVKNLTEEMAGLDEIIAKLTKEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQV 1031
Query: 111 SDQPAAASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLEFSLRIQEFIELIRQ 170
D + K+ RMD + L T + + L+ L+ ++F EL
Sbjct: 1032 DDLEGSLEQEKKVRMDLERAKRKLEGDLKLTQESIMDLENDKQQLDERLKKKDF-ELNAL 1090
Query: 171 NKRLDAVRHARKHFSQAEGSQLDE 194
N R++ QA GSQL +
Sbjct: 1091 NARIED--------EQALGSQLQK 1106
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform
4 [Homo sapiens]
Length = 3321
Score = 33.1 bits (74), Expect = 0.39
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 50/199 (25%)
Query: 22 LKVPYETLNKRFRAAQKNIDR--ETSHVTMVVAELEKTLSGCPAV---------DSVVSL 70
+++ +E+L++ F QK + E ++ + + LSG P +V SL
Sbjct: 819 MRMKWESLHQEFSTKQKLLQNVLEQEQEQVLYSRPNRLLSGVPLYKGDVPTQDKSAVTSL 878
Query: 71 LDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMV 130
LDG+ +A E + ++ AK R+ HL++ D +A S W +R+ V
Sbjct: 879 LDGL--------NQAFEEVSSQSGGAK---RQSIHLEQKLYDGVSATSTWLDDVEERLFV 927
Query: 131 EHLLRCGYYNTAVKLARQSGIESCL----EFSLRIQEFIELIRQNKRLDAVRHARKHFSQ 186
L L ++ E+CL + I+E E + +NK L FSQ
Sbjct: 928 ATAL----------LPEET--ETCLFNQEILAKDIKEMSEEMDKNKNL---------FSQ 966
Query: 187 A---EGSQLDEVRQAMGML 202
A G D + +G L
Sbjct: 967 AFPENGDNRDVIEDTLGCL 985
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 33.1 bits (74), Expect = 0.39
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 50/199 (25%)
Query: 22 LKVPYETLNKRFRAAQKNIDR--ETSHVTMVVAELEKTLSGCPAV---------DSVVSL 70
+++ +E+L++ F QK + E ++ + + LSG P +V SL
Sbjct: 6224 MRMKWESLHQEFSTKQKLLQNVLEQEQEQVLYSRPNRLLSGVPLYKGDVPTQDKSAVTSL 6283
Query: 71 LDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMV 130
LDG+ +A E + ++ AK R+ HL++ D +A S W +R+ V
Sbjct: 6284 LDGL--------NQAFEEVSSQSGGAK---RQSIHLEQKLYDGVSATSTWLDDVEERLFV 6332
Query: 131 EHLLRCGYYNTAVKLARQSGIESCL----EFSLRIQEFIELIRQNKRLDAVRHARKHFSQ 186
L L ++ E+CL + I+E E + +NK L FSQ
Sbjct: 6333 ATAL----------LPEET--ETCLFNQEILAKDIKEMSEEMDKNKNL---------FSQ 6371
Query: 187 A---EGSQLDEVRQAMGML 202
A G D + +G L
Sbjct: 6372 AFPENGDNRDVIEDTLGCL 6390
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 33.1 bits (74), Expect = 0.39
Identities = 48/199 (24%), Positives = 81/199 (40%), Gaps = 50/199 (25%)
Query: 22 LKVPYETLNKRFRAAQKNIDR--ETSHVTMVVAELEKTLSGCPAV---------DSVVSL 70
+++ +E+L++ F QK + E ++ + + LSG P +V SL
Sbjct: 6295 MRMKWESLHQEFSTKQKLLQNVLEQEQEQVLYSRPNRLLSGVPLYKGDVPTQDKSAVTSL 6354
Query: 71 LDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMV 130
LDG+ +A E + ++ AK R+ HL++ D +A S W +R+ V
Sbjct: 6355 LDGL--------NQAFEEVSSQSGGAK---RQSIHLEQKLYDGVSATSTWLDDVEERLFV 6403
Query: 131 EHLLRCGYYNTAVKLARQSGIESCL----EFSLRIQEFIELIRQNKRLDAVRHARKHFSQ 186
L L ++ E+CL + I+E E + +NK L FSQ
Sbjct: 6404 ATAL----------LPEET--ETCLFNQEILAKDIKEMSEEMDKNKNL---------FSQ 6442
Query: 187 A---EGSQLDEVRQAMGML 202
A G D + +G L
Sbjct: 6443 AFPENGDNRDVIEDTLGCL 6461
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo
sapiens]
Length = 2564
Score = 33.1 bits (74), Expect = 0.39
Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 27/223 (12%)
Query: 42 RETSHVTMVVAELEKTLSGCPAVDSVVSLLDGVVE-------------KLSVLKRKAVES 88
R+ +V+ E LSG +V S+ + + + K+ V + A
Sbjct: 1206 RDLRQALVVLRNQEMALSGAELPGTVESVEEALKQHRDFLTTMELSQQKMQVAVQAAEGL 1265
Query: 89 IQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMVEHLLR-C----GYYNTAV 143
++ + + + + L E + + A W +K D++ ++H LR C G+ + +
Sbjct: 1266 LRQGNIYGEQAQEAVTRLLEKNQENQLRAQQWMQKLHDQLELQHFLRDCHELDGWIHEKM 1325
Query: 144 KLARQSGIESCLEFS---LRIQEFIELIRQNKR-LDAVRHARKHFSQAEGSQLDEVRQAM 199
+AR E + LR Q F+ + QNK L+ + + Q + VR+ +
Sbjct: 1326 LMARDGTREDNHKLHKRWLRHQAFMAELAQNKEWLEKIEREGQQLMQEKPELAASVRKKL 1385
Query: 200 GML----AFPPDTHISPYKDLLDPARWRMLIQQF-RYDNYRLH 237
G + A T + + L + ++ L+Q F D LH
Sbjct: 1386 GEIRQCWAELESTTQAKARQLFEASKADQLVQSFAELDKKLLH 1428
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 32.3 bits (72), Expect = 0.66
Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 48/246 (19%)
Query: 2 AVQESAAQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGC 61
A ++ LS+ ++E K E LNK+FR +++ V V ELEK+
Sbjct: 1471 AREKETKALSLARALEEAMEQKAELERLNKQFRTEMEDLMSSKDDVGKSVHELEKSKRAL 1530
Query: 62 -PAVDSVVSLLDGVVEK--------------LSVLKRKAVESIQAEDESAKLCKRRI--- 103
V+ + + L+ + ++ L +K + +Q DE ++ K+++
Sbjct: 1531 EQQVEEMKTQLEELEDELQATEDAKLRLEVNLQAMKAQFERDLQGRDEQSEEKKKQLVRQ 1590
Query: 104 -----EHLKEHSSDQPAAASVWKRKRMDRMMVEHLLRCGYYN--TAVKLAR--QSGIESC 154
L++ + A + K+ MD +E + N A+K R Q+ ++ C
Sbjct: 1591 VREMEAELEDERKQRSMAVAARKKLEMDLKDLEAHIDSANKNRDEAIKQLRKLQAQMKDC 1650
Query: 155 L--------------------EFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQLDE 194
+ E L+ E E+I+ + L A A++ Q DE
Sbjct: 1651 MRELDDTRASREEILAQAKENEKKLKSME-AEMIQLQEELAAAERAKRQAQQERDELADE 1709
Query: 195 VRQAMG 200
+ + G
Sbjct: 1710 IANSSG 1715
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 32.0 bits (71), Expect = 0.87
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 8 AQLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPA---- 63
A+ + K++E E +N A ++ ++ E S + + +LE TL+
Sbjct: 912 AKFQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHA 971
Query: 64 ----VDSVVSLLDGVVEKLSVLKRK----------AVESIQAEDESAKLCKRRIEHLKEH 109
V ++ L G+ E ++ L R+ A++ +QAE++ + L++
Sbjct: 972 TENKVKNLTEELSGLDETIAKLTREKKALQEAHQQALDDLQAEEDKVNSLNKTKSKLEQQ 1031
Query: 110 SSDQPAAASVWKRKRMD 126
D ++ K+ R+D
Sbjct: 1032 VEDLESSLEQEKKLRVD 1048
>gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens]
Length = 228
Score = 32.0 bits (71), Expect = 0.87
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 45/141 (31%)
Query: 121 KRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLE------------------------ 156
+R M+R+++ +L+ G+ A K +SGIE ++
Sbjct: 25 QRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQIQEAIA 84
Query: 157 -----------------FSLRIQEFIELIRQNKRLDAVRHARKHFS-QAEGSQ--LDEVR 196
F L+ Q IELIRQ + A+ A+ + Q E S+ L E+
Sbjct: 85 LINSLHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEME 144
Query: 197 QAMGMLAFPPDTHISPYKDLL 217
+ + +LAF SP+ DLL
Sbjct: 145 RTLALLAFDSPEE-SPFGDLL 164
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 31.6 bits (70), Expect = 1.1
Identities = 38/164 (23%), Positives = 62/164 (37%), Gaps = 35/164 (21%)
Query: 52 AELEKTLSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEH----LK 107
AE +K V + L VE L KR+ S++ E E + +E LK
Sbjct: 2824 AEAQKHCEALRREKEVSATLKSTVEALHTQKRELRCSLEREREKPAWLQAELEQSHPRLK 2883
Query: 108 EHSS-----------DQPAAASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIESCLE 156
E PAAA W++ + D+ + L +L RQ +
Sbjct: 2884 EQEGRKAARRSAEARQSPAAAEQWRKWQRDKEKLREL----------ELQRQRDLH---- 2929
Query: 157 FSLRIQEFIELIRQNKRLDAVRHARKHFS---QAEGSQLDEVRQ 197
+I++ + +R + D V +R H +A GS D +R+
Sbjct: 2930 ---KIKQLQQTVRDLESKDEVPGSRLHLGSARRAAGSDADHLRE 2970
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 117 ASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-------SCLEFSLRIQEFIELIR 169
A KR+ + ++ HLLR GY A ++ QSG + + L+ Q+ EL R
Sbjct: 2 AEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELGR 61
Query: 170 QNK-RLDAVRHARK-----HFSQAEGSQLDEVRQAMGMLAFP 205
+ K DA A+K S +E S+ +E +A A P
Sbjct: 62 KRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATP 103
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 117 ASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-------SCLEFSLRIQEFIELIR 169
A KR+ + ++ HLLR GY A ++ QSG + + L+ Q+ EL R
Sbjct: 2 AEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELGR 61
Query: 170 QNK-RLDAVRHARK-----HFSQAEGSQLDEVRQAMGMLAFP 205
+ K DA A+K S +E S+ +E +A A P
Sbjct: 62 KRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATP 103
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 117 ASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-------SCLEFSLRIQEFIELIR 169
A KR+ + ++ HLLR GY A ++ QSG + + L+ Q+ EL R
Sbjct: 2 AEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELGR 61
Query: 170 QNK-RLDAVRHARK-----HFSQAEGSQLDEVRQAMGMLAFP 205
+ K DA A+K S +E S+ +E +A A P
Sbjct: 62 KRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATP 103
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 117 ASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-------SCLEFSLRIQEFIELIR 169
A KR+ + ++ HLLR GY A ++ QSG + + L+ Q+ EL R
Sbjct: 2 AEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELGR 61
Query: 170 QNK-RLDAVRHARK-----HFSQAEGSQLDEVRQAMGMLAFP 205
+ K DA A+K S +E S+ +E +A A P
Sbjct: 62 KRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATP 103
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 117 ASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-------SCLEFSLRIQEFIELIR 169
A KR+ + ++ HLLR GY A ++ QSG + + L+ Q+ EL R
Sbjct: 2 AEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELGR 61
Query: 170 QNK-RLDAVRHARK-----HFSQAEGSQLDEVRQAMGMLAFP 205
+ K DA A+K S +E S+ +E +A A P
Sbjct: 62 KRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATP 103
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 31.6 bits (70), Expect = 1.1
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 117 ASVWKRKRMDRMMVEHLLRCGYYNTAVKLARQSGIE-------SCLEFSLRIQEFIELIR 169
A KR+ + ++ HLLR GY A ++ QSG + + L+ Q+ EL R
Sbjct: 2 AEARKRRELLPLIYHHLLRAGYVRAAREVKEQSGQKCFLAQPVTLLDIYTHWQQTSELGR 61
Query: 170 QNK-RLDAVRHARK-----HFSQAEGSQLDEVRQAMGMLAFP 205
+ K DA A+K S +E S+ +E +A A P
Sbjct: 62 KRKAEEDAALQAKKTRVSDPISTSESSEEEEEAEAETAKATP 103
>gi|41281753 NIMA-related kinase 11 isoform 2 [Homo sapiens]
Length = 470
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 19/120 (15%)
Query: 2 AVQESAAQLSMTLKVQEYPTLKVPY-----ETLNKRFRAA---QKNID--RETSHVTMVV 51
A+ ES + +L+ LK+PY + L R+ KN+D +E +H+ +
Sbjct: 262 AIMESMLNKNPSLRPSAIEILKIPYLDEQLQNLMCRYSEMTLEDKNLDCQKEAAHI---I 318
Query: 52 AELEKTLSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSS 111
++K + + ++ +L + V+K++ +R + +QA DE A+ K+ +E E +S
Sbjct: 319 NAMQKRIH----LQTLRALSE--VQKMTPRERMRLRKLQAADEKARKLKKIVEEKYEENS 372
>gi|225637562 NIMA-related kinase 11 isoform 3 [Homo sapiens]
Length = 599
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 19/120 (15%)
Query: 2 AVQESAAQLSMTLKVQEYPTLKVPY-----ETLNKRFRAA---QKNID--RETSHVTMVV 51
A+ ES + +L+ LK+PY + L R+ KN+D +E +H+ +
Sbjct: 262 AIMESMLNKNPSLRPSAIEILKIPYLDEQLQNLMCRYSEMTLEDKNLDCQKEAAHI---I 318
Query: 52 AELEKTLSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSS 111
++K + + ++ +L + V+K++ +R + +QA DE A+ K+ +E E +S
Sbjct: 319 NAMQKRIH----LQTLRALSE--VQKMTPRERMRLRKLQAADEKARKLKKIVEEKYEENS 372
>gi|225637560 NIMA-related kinase 11 isoform 1 [Homo sapiens]
Length = 645
Score = 30.8 bits (68), Expect = 1.9
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 19/120 (15%)
Query: 2 AVQESAAQLSMTLKVQEYPTLKVPY-----ETLNKRFRAA---QKNID--RETSHVTMVV 51
A+ ES + +L+ LK+PY + L R+ KN+D +E +H+ +
Sbjct: 262 AIMESMLNKNPSLRPSAIEILKIPYLDEQLQNLMCRYSEMTLEDKNLDCQKEAAHI---I 318
Query: 52 AELEKTLSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSS 111
++K + + ++ +L + V+K++ +R + +QA DE A+ K+ +E E +S
Sbjct: 319 NAMQKRIH----LQTLRALSE--VQKMTPRERMRLRKLQAADEKARKLKKIVEEKYEENS 372
>gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]
Length = 515
Score = 30.8 bits (68), Expect = 1.9
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 28/177 (15%)
Query: 54 LEKTLSGCPAVDSVVSLLDGVVEKLSVLKRKAVESI-------QAEDESAKLCKRRIEHL 106
LEK L CP V+SV L V +K ++ VE + + DE+ ++ I
Sbjct: 27 LEKLLRSCPKVNSVYVL---VRQKAGQTPQERVEEVLSGKLFDRLRDENPDFREKIIAIN 83
Query: 107 KEHSSDQPAAASVWKRKRMDRM-MVEHLLRCGYYNTAVKLARQSGIESCLEFSLRIQEFI 165
E + + A + K +D ++ H +N ++ A Q + + ++ I
Sbjct: 84 SELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNENLRDAVQLNV-------IATRQLI 136
Query: 166 ELIRQNKRLDAVRHARKHFSQAEGSQLDEVRQAMGMLAFPPDTHISPYKDLLDPARW 222
L +Q K L+ H ++ +DEV +PP + P K L+D W
Sbjct: 137 LLAQQMKNLEVFMHVSTAYAYCNRKHIDEV-------VYPPP--VDP-KKLIDSLEW 183
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
sapiens]
Length = 1937
Score = 30.8 bits (68), Expect = 1.9
Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 9 QLSMTLKVQEYPTLKVPYETLNKRFRAAQKNIDRETSHVTMVVAELEKTLSGCPA----- 63
++ + K++E E +N A ++ ++ E S + + +LE TL+
Sbjct: 915 KIQLEAKIKEVTERAEEEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHAT 974
Query: 64 ------VDSVVSLLDGVVEKLSVLKR-------KAVESIQAEDESAKLCKRRIEHLKEHS 110
+ ++ LD + KLS K+ + ++ +QAE++ + + L++
Sbjct: 975 ENKVKNLTEEMAGLDETIAKLSKEKKALQETHQQTLDDLQAEEDKVNILTKAKTKLEQQV 1034
Query: 111 SDQPAAASVWKRKRMD 126
D + K+ RMD
Sbjct: 1035 DDLEGSLEQEKKLRMD 1050
>gi|47519798 neutrophil cytosolic factor 4 isoform 1 [Homo sapiens]
Length = 339
Score = 30.4 bits (67), Expect = 2.5
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 134 LRCGYYNTAVKLARQSGIESCLEFSLRIQEFIELIRQNKRLDAVRHARKHFSQAEGSQL- 192
LRC YY + + +E L + +++ +EL R+ + + + ++ AEG +
Sbjct: 240 LRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDI---ALNYRDAEGDLVR 296
Query: 193 ---DE-----VRQAMGMLAFPPDTHISPYKDLLDPARWRMLIQQFRYDNYRLH 237
DE VRQA G+ P + P W++ I Q DNYR++
Sbjct: 297 LLSDEDVALMVRQARGL---PSQKRLFP---------WKLHITQ--KDNYRVY 335
>gi|4758274 erythrocyte membrane protein band 4.1 (elliptocytosis 1,
RH-linked) isoform 3 [Homo sapiens]
Length = 588
Score = 30.4 bits (67), Expect = 2.5
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 34 RAAQKNIDRETSHVTMVVAE-LEKTLSGCPAVDSV---------VSLLDGVVEKLSVLKR 83
R A IDR H ++ ++L G AVDS ++ G V + VL
Sbjct: 309 RQASALIDRPAPHFERTASKRASRSLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDA 368
Query: 84 KAVESI--QAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMD 126
A +++ +A+ E+ K ++ + E + +P A KR+R+D
Sbjct: 369 SAKKTVVPKAQKETVKAEVKKEDEPPEQAEPEPTEAWKKKRERLD 413
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 30.4 bits (67), Expect = 2.5
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 56 KTLSGCPAVDSVVSLLDGVVEKLSVLKRKAVESIQAEDESAKLCKRRIEHLKEHSSDQPA 115
++LSGCP S + E++ +K++A I+ DE K I+ L E +S A
Sbjct: 1024 RSLSGCPRATSAMKKAKLSGEQMLTIKQRASNGIE-NDEEIKQLDEEIKELNESNSQMEA 1082
>gi|5902142 DNA polymerase sigma [Homo sapiens]
Length = 542
Score = 30.0 bits (66), Expect = 3.3
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 261 CYKEDGSSKSPDCPVCSRSLNKLAQPLPMAHCANSRLVCKISGDVMNENNPPMMLPNGYV 320
C E ++ P+ P R L+ P ++ +++ V +SG ++ + PP P+ Y
Sbjct: 325 CNGEQTQNREPESPYGQRLTLSLSSPQLLSSGSSASSVSSLSGSDVDSDTPPCTTPSVYQ 384
Query: 321 Y 321
+
Sbjct: 385 F 385
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 29.3 bits (64), Expect = 5.6
Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 86 VESIQAEDESAKLCKRRIEHLKEHSSDQPAAASVWKRKRMDRMMVEHLLRCGYYNTAVKL 145
VE + E+E K+ R H KE W +K + ++TA +
Sbjct: 1354 VERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKKITGK---------DIHDTASSV 1404
Query: 146 AR----QSGIESCLEFSLRIQE-FIELIRQNKRLDAVRHARKHFSQAEGS 190
AR Q G++ C S I+E +E I + R RK S A S
Sbjct: 1405 ARGLQFQRGLQFCTRASKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSS 1454
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,666,171
Number of Sequences: 37866
Number of extensions: 521472
Number of successful extensions: 1783
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 73
length of query: 355
length of database: 18,247,518
effective HSP length: 103
effective length of query: 252
effective length of database: 14,347,320
effective search space: 3615524640
effective search space used: 3615524640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.