Guide to the Human Genome
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Name: RMND5B Sequence: fasta or formatted (393aa) NCBI GI: 21362098
Description:

required for meiotic nuclear division 5 homolog B

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         28           2
 C cysteine            4.3         17           2
 D aspartate           4.3         17           1
 E glutamate           7.6         30           2
 F phenylalanine       3.1         12           1
 G glycine             4.8         19           2
 H histidine           4.1         16           1
 I isoleucine          5.3         21           2
 K lysine              4.8         19           1
 L leucine            14.0         55           2
 M methionine          2.3          9           2
 N asparagine          2.5         10           1
 P proline             3.8         15           2
 Q glutamine           6.9         27           4
 R arginine            5.3         21           1
 S serine              7.9         31           2
 T threonine           2.3          9           1
 V valine              6.1         24           2
 W tryptophan          1.3          5           1
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   required for meiotic nuclear division 5 homolog B [H... 
RMND5A                0.707   required for meiotic nuclear division 5 homolog A [H...
MAEA                  0.067   macrophage erythroblast attacher isoform 1 
MAEA                  0.032   macrophage erythroblast attacher isoform 2 
GCC2                  0.014   GRIP and coiled-coil domain-containing 2 
TRIM32                0.013   tripartite motif-containing 32 
TRIM32                0.013   tripartite motif-containing 32 
RPGRIP1               0.013   retinitis pigmentosa GTPase regulator interacting p...
LOC100131154          0.012   PREDICTED: similar to chondroitin sulfate proteogly...
LOC100131154          0.012   PREDICTED: similar to chondroitin sulfate proteogly...
LOC100287819          0.012   PREDICTED: hypothetical protein XP_002344245 
LOC100287758          0.012   PREDICTED: hypothetical protein XP_002344244 
RNF125                0.010   ring finger protein 125 
TRIM56                0.010   tripartite motif-containing 56 
MACF1                 0.008   microfilament and actin filament cross-linker protei...
MACF1                 0.008   microfilament and actin filament cross-linker protei...
NSMCE2                0.008   non-SMC element 2, MMS21 homolog 
DNAH8                 0.008   dynein, axonemal, heavy polypeptide 8 
RC3H1                 0.006   roquin 
TRIM23                0.006   ADP-ribosylation factor domain protein 1 isoform gam...
TRIM23                0.006   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.006   ADP-ribosylation factor domain protein 1 isoform alph...
GOLGA4                0.006   golgi autoantigen, golgin subfamily a, 4 
MYH7B                 0.006   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
NPHP3                 0.006   nephrocystin 3 
NR2F1                 0.006   nuclear receptor subfamily 2, group F, member 1 [Homo...
KLHL24                0.006   DRE1 protein 
RANBP9                0.005   RAN binding protein 9 
KRT84                 0.005   keratin, hair, basic, 4 
TRIM21                0.005   tripartite motif protein 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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