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Search of human proteins with 62912482
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|62912482 high mobility group AT-hook 2 isoform b [Homo
sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 219 4e-58
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 175 8e-45
gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens] 77 4e-15
gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens] 77 4e-15
gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens] 77 4e-15
gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens] 77 4e-15
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens] 75 1e-14
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens] 75 1e-14
gi|239753198 PREDICTED: hypothetical protein [Homo sapiens] 72 7e-14
gi|239747772 PREDICTED: hypothetical protein [Homo sapiens] 72 7e-14
gi|239741638 PREDICTED: hypothetical protein [Homo sapiens] 72 7e-14
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 42 8e-05
gi|155029552 hypothetical protein LOC388115 [Homo sapiens] 42 1e-04
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 41 2e-04
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 40 3e-04
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 40 4e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 40 5e-04
gi|122937227 U2-associated SR140 protein [Homo sapiens] 40 5e-04
gi|145199237 transcription elongation factor B polypeptide 3 bin... 40 5e-04
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 39 7e-04
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 39 0.001
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 39 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.001
gi|19924099 synapsin I isoform Ia [Homo sapiens] 39 0.001
gi|19924097 synapsin I isoform Ib [Homo sapiens] 39 0.001
gi|24431975 hypothetical protein LOC26148 [Homo sapiens] 39 0.001
gi|19557702 surfeit 6 [Homo sapiens] 39 0.001
gi|153792074 proline rich 12 [Homo sapiens] 39 0.001
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens]
Length = 106
Score = 219 bits (558), Expect = 4e-58
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
Query: 61 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH 106
SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH
Sbjct: 61 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH 106
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 175 bits (443), Expect = 8e-45
Identities = 85/105 (80%), Positives = 92/105 (87%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
Query: 61 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRS 105
SKAAQKKAEATGEKRPRGRPRKW + + ++ + S++ S
Sbjct: 61 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQES 105
>gi|22208979 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 76.6 bits (187), Expect = 4e-15
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K +K T ++PRGRP+K
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK 78
>gi|22208973 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 76.6 bits (187), Expect = 4e-15
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K +K T ++PRGRP+K
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK 78
>gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 76.6 bits (187), Expect = 4e-15
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K +K T ++PRGRP+K
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK 78
>gi|22208975 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 76.6 bits (187), Expect = 4e-15
Identities = 42/83 (50%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ +EP+ P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K +K T ++PRGRP+K
Sbjct: 58 AAKT--RKTTTTPGRKPRGRPKK 78
>gi|22208971 high mobility group AT-hook 1 isoform a [Homo
sapiens]
Length = 107
Score = 74.7 bits (182), Expect = 1e-14
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 17/94 (18%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQ------------QQEPTGEPSPKRP 48
MS + QP S Q + +KRGRGRPRKQ Q+EP+ P+PKRP
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
RGRPKGSKNK +K +K T ++PRGRP+K
Sbjct: 58 RGRPKGSKNKGAAKT--RKTTTTPGRKPRGRPKK 89
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 55 SKNKSPSKAAQKKAEATGEKRPRGRPRKWDNLLPRTS---SKKKTSLGNSTKR 104
S +KS A K+ + EKR RGRPRK + P T+ S+K+ S + KR
Sbjct: 4 SSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKR 56
>gi|22208967 high mobility group AT-hook 1 isoform a [Homo
sapiens]
Length = 107
Score = 74.7 bits (182), Expect = 1e-14
Identities = 43/94 (45%), Positives = 54/94 (57%), Gaps = 17/94 (18%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQ------------QQEPTGEPSPKRP 48
MS + QP S Q + +KRGRGRPRKQ Q+EP+ P+PKRP
Sbjct: 1 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRP 57
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
RGRPKGSKNK +K +K T ++PRGRP+K
Sbjct: 58 RGRPKGSKNKGAAKT--RKTTTTPGRKPRGRPKK 89
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 55 SKNKSPSKAAQKKAEATGEKRPRGRPRKWDNLLPRTS---SKKKTSLGNSTKR 104
S +KS A K+ + EKR RGRPRK + P T+ S+K+ S + KR
Sbjct: 4 SSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKR 56
>gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K K T ++PRGRP+K
Sbjct: 58 AAKTG--KTTTTLGRKPRGRPKK 78
>gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K K T ++PRGRP+K
Sbjct: 58 AAKTG--KTTTTLGRKPRGRPKK 78
>gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
Query: 60 PSKAAQKKAEATGEKRPRGRPRK 82
+K K T ++PRGRP+K
Sbjct: 58 AAKTG--KTTTTLGRKPRGRPKK 78
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 42.4 bits (98), Expect = 8e-05
Identities = 36/102 (35%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP 60
M ARG G G+P S A PAP P QQ+P P P P G P + + P
Sbjct: 1 MDARG-GGGRPGESPG---ATPAPGPPPPPPPAPPQQQPPPPPPPAPPPG-PGPAPPQHP 55
Query: 61 SKAAQKKAEATGEKRPRGRPRKWDNLL--PRTSSKKKTSLGN 100
+A EA E PRGR R D+ P T T+ G+
Sbjct: 56 PRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGS 97
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 14 SAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQK------- 66
S+ G+P P +G P + + SP P G +G K + A
Sbjct: 80 SSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSFSCRGAASGPAPGPG 139
Query: 67 KAEATG--EKRPRGRPR 81
AE G E P G PR
Sbjct: 140 PAEEAGSEEAGPAGEPR 156
Score = 26.9 bits (58), Expect = 3.6
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 11 PSTSAQGQ-PAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA------ 63
P TS G PAAP R + P P P G P + + P+ +
Sbjct: 790 PRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASSSTPRLG 849
Query: 64 ---AQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTS 97
A + A + ++R P L P+ S++ + S
Sbjct: 850 PTPAARAAAPSPDRRDSASPGAAGGLDPQDSARSRLS 886
>gi|155029552 hypothetical protein LOC388115 [Homo sapiens]
Length = 534
Score = 42.0 bits (97), Expect = 1e-04
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
Q + +G+ A A +RG PR Q+ +P P P G+ +G + PS A ++
Sbjct: 274 QDCSQLRGEGPARAGSRRG---PRSHQKL---QPPPLLPDGKGRGGQASRPSVAPATGSK 327
Query: 70 ATGEKRPRGRPRKWD 84
A G++R GR R+WD
Sbjct: 328 ARGKERLTGRARRWD 342
Score = 25.8 bits (55), Expect = 7.9
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE------------PSPKRP 48
+S G G P S P Q+ P +Q+P G P P+R
Sbjct: 422 LSLGGAGIPGPRESGCVLGLRPGAQESPVSWPEGSKQQPLGWSNHQAELEVQTCPEPQRG 481
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
G P+ +++S AQ+ PR RP +
Sbjct: 482 AGLPEPGEDRSGKSGAQQGL------APRSRPTR 509
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 23 APQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
A + R R R++++ +G SPK+PR PK ++SPS KK + + + R R +
Sbjct: 333 ARRSRSASRERRRRRSRSGTRSPKKPRS-PKRKLSRSPSPRRHKKEKKKDKDKERSRDER 391
Query: 83 WDNLLPRTSSKKKTS 97
R++SKKK S
Sbjct: 392 -----ERSTSKKKKS 401
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 27 RGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEK---RPRGRPRK 82
R +PR +++ + PSP+R + K K+K S+ ++++ + +K + + R RK
Sbjct: 353 RSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERK 411
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 40.4 bits (93), Expect = 3e-04
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 6 EGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAA- 64
EGA P + G AAP P RG + P+ P S ++P A
Sbjct: 71 EGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPLAQAPSSSASVGRAPGAMAS 130
Query: 65 -QKKAEATGEKRPR-GRPRKWDNLLP 88
+ +EATG+ R R GRPR+ ++ +P
Sbjct: 131 PSRSSEATGKPRGRDGRPRREEDDVP 156
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 40.4 bits (93), Expect = 3e-04
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 3 ARGEGAGQPSTSAQGQPAA-----PAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKN 57
+RG G +T Q PAA P P +R RG PR EP P P RP +
Sbjct: 273 SRGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPR--PAEPRAPPRPPPAARRPPPATA 330
Query: 58 KSPSKAAQKKAEATGEKRPRGR 79
SP +A + T E+ PR R
Sbjct: 331 PSPRRAG---SPPTREEEPRPR 349
Score = 33.1 bits (74), Expect = 0.050
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQK 66
QP+ ++G+P P+ R P ++ P PSP+R P + P ++A +
Sbjct: 298 QPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPSPRRAGSPPTREEEPRPRRSAAR 354
Score = 30.0 bits (66), Expect = 0.42
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPR 49
+P +A+ P A AP R G P +++EP S RP+
Sbjct: 317 RPPPAARRPPPATAPSPRRAGSPPTREEEPRPRRSAARPQ 356
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 40.0 bits (92), Expect = 4e-04
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67
A P+ +G+ A PA G ++E G + K+P SPSKA +KK
Sbjct: 353 AATPTKGPEGKVAGPADAPMDSGA----EEEKAGAATVKKP----------SPSKARKKK 398
Query: 68 AEATGEK---RPRGRPRKWDNLLPRTSSKK 94
G K R RGRP+K + P KK
Sbjct: 399 LNKKGRKMAGRKRGRPKKMNTANPERKPKK 428
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67
A S + + + A +K + RK++ G R RGRPK +P + +K
Sbjct: 370 APMDSGAEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKKMNTANPERKPKKN 429
Query: 68 AEA 70
A
Sbjct: 430 QTA 432
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 39.7 bits (91), Expect = 5e-04
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S G+ G P P P + +G P + +P G P P +P+G P+G K++SP
Sbjct: 52 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSP 111
Query: 61 SKAAQKK--AEATGEKRPRGRP 80
K G +P+G P
Sbjct: 112 RSPPGKPQGPPPQGGNQPQGPP 133
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P NKS S
Sbjct: 113 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRS 172
Query: 62 KAA----QKKAEATGEKRPRGRP 80
+ + G +P+G P
Sbjct: 173 SRSPPGKPQGPPPQGGNQPQGPP 195
Score = 38.1 bits (87), Expect = 0.002
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P NKS S
Sbjct: 175 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQS 234
Query: 62 KAA----QKKAEATGEKRPRGRP 80
+ + G +P+G P
Sbjct: 235 ARSPPGKPQGPPPQGGNQPQGPP 257
Score = 37.4 bits (85), Expect = 0.003
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQK------------RGRGRPRKQQQEPTGEPSPKRPRGR 51
+G+ Q + S G+P P PQ + +G P + +P G P P +P+G
Sbjct: 227 QGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 286
Query: 52 PK--GSKNKSPSKAAQKKAEA---TGEKRPRGRP 80
P GSK++S S++ K + G +P+G P
Sbjct: 287 PPQGGSKSRS-SRSPPGKPQGPPPQGGNQPQGPP 319
Score = 36.2 bits (82), Expect = 0.006
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPS 61
S G+ G P P P + +G P + +P G P P +P+G P P
Sbjct: 299 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP-------PQ 351
Query: 62 KAAQKKAEATGEKRPRGRPRKWDN 85
++ ++ + +P+G P++ N
Sbjct: 352 GGSKSRSARSPPGKPQGPPQQEGN 375
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK-RPRGRPKGSKNK----- 58
G G P P+P + +G P + +P G P P +P+G P NK
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 93
Query: 59 SPSKAAQKKAEATGEKRPRGRPRK 82
P K + + PR P K
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGK 117
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 17 GQPAAPAPQKRGRGRPRKQQQEPTGEP--------SPKRPRGRPKGSKNKSPSKAAQKKA 68
G+P P PQ PR +P G P P P G+P+G P + K
Sbjct: 96 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQGGNKPQ 151
Query: 69 EATGEKRPRGRPRKWDN 85
+P+G P + DN
Sbjct: 152 GPPPPGKPQGPPPQGDN 168
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 4 RGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA 63
+G+ + S S G+P P PQ G +P+ P P G+P+G P +
Sbjct: 165 QGDNKSRSSRSPPGKPQGPPPQ--GGNQPQ----------GPPPPPGKPQGP----PPQG 208
Query: 64 AQKKAEATGEKRPRGRPRKWDN 85
K +P+G P + DN
Sbjct: 209 GNKPQGPPPPGKPQGPPPQGDN 230
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSP------------KRPRGRP 52
G+ G P +A +P + +G P + +P G P P +P+G P
Sbjct: 219 GKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 278
Query: 53 KGSKNKSPSKAAQKKAEATGEKRPRGRPR 81
K + P K+ ++ + P G+P+
Sbjct: 279 PPGKPQGPPPQGGSKSRSS--RSPPGKPQ 305
Score = 29.6 bits (65), Expect = 0.55
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEP-----SPKRPRGRPKGSKNKS 59
G+ G P +A +P + +G P+++ P G P +P++P+ P G
Sbjct: 343 GKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 402
Query: 60 P 60
P
Sbjct: 403 P 403
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 14 SAQGQPAAPAPQKRGRGRPRKQQQEPTGEPS------PKRPRGRPKGSKNKSPSKAAQKK 67
S G+P P PQ G + P G+P +P+G P K + P K
Sbjct: 113 SPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNK 169
Query: 68 AEATGEKRPRGRPR 81
+ ++ + P G+P+
Sbjct: 170 SRSS--RSPPGKPQ 181
Score = 26.6 bits (57), Expect = 4.6
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 17 GQPAAPAPQ-----KRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEAT 71
G+P P PQ + R P K Q P E + P+G P + A +
Sbjct: 343 GKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGN--NPQGPPPPAGGNPQQPQAPPAGQPQ 400
Query: 72 GEKRP--RGRPRK 82
G RP GRP +
Sbjct: 401 GPPRPPQGGRPSR 413
>gi|122937227 U2-associated SR140 protein [Homo sapiens]
Length = 1029
Score = 39.7 bits (91), Expect = 5e-04
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 21 APAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRG-- 78
+P+P + GR R + P E S + R + S+++S K + + ++ P G
Sbjct: 932 SPSPSRSSSGR-RVKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSKKAKRSPSGSR 990
Query: 79 ---RPRKWDNLLPRTSSKKKTSLGNSTKRSH 106
R R+ + P+ S KK S S RSH
Sbjct: 991 TPKRSRRSRSRSPKKSGKKSRSQSRSPHRSH 1021
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 39.7 bits (91), Expect = 5e-04
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 31/118 (26%)
Query: 9 GQPSTSAQGQPAAPA----------PQKRGRGRPRKQQQEPTGEP---SPKRPRGRPKGS 55
G+P G P AP+ + +GRGRP ++ + P SP+R RP+G+
Sbjct: 374 GKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRPVEKPRADKKGPQASSPRRKAERPEGT 433
Query: 56 KNK-------------SPSKAAQKKAEATGEKRP---RGRPRKWDNLLPRTSSKKKTS 97
K K P + A++ + +G+ RP RG PR LP S K S
Sbjct: 434 KKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQ--LPDRKSTKAPS 489
Score = 27.7 bits (60), Expect = 2.1
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEP---TGEPSPKRPRGRPK------GSKNK 58
A +P + + +A G+GRP + + P +G+ P RG P+ K
Sbjct: 427 AERPEGTKKKPSSATPVATSGKGRPDRPARRPSPTSGDSRPAAGRGPPRPLQLPDRKSTK 486
Query: 59 SPS-KAAQKKAEATGEKRPRGRPR 81
+PS K ++KA + E + P+
Sbjct: 487 APSGKLVERKARSLDEGASQDAPK 510
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 39.3 bits (90), Expect = 7e-04
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S G+ G P P P + +G P + P G P P +P+G P+G K++SP
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSP 151
Query: 61 SKAAQKK--AEATGEKRPRGRP 80
K G +P+G P
Sbjct: 152 RSPPGKPQGPPPQGGNQPQGPP 173
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S G+ G P P P + +G P + ++P G P P +P+G P+G K++S
Sbjct: 153 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS 212
Query: 61 SKAAQKK--AEATGEKRPRGRP 80
K G +P+G P
Sbjct: 213 QSPPGKPQGPPPQGGNQPQGPP 234
Score = 35.8 bits (81), Expect = 0.008
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPK--GSKN-- 57
S G+ G P P P + +G P + +P G P P +P+G P GSK+
Sbjct: 214 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQS 273
Query: 58 -KSPSKAAQKKAEATGEKRPRGRP 80
+SP Q + G P+G P
Sbjct: 274 ARSPPGKPQGPPQQEG-NNPQGPP 296
Score = 33.5 bits (75), Expect = 0.038
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 2 SARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRG-RPKGSKNKSP 60
S +G Q G+P P PQ + P G P P +P+G P+G K++SP
Sbjct: 40 SPQGGNKPQGPPPPPGKPQGPPPQGGNK---------PQGPPPPGKPQGPPPQGDKSRSP 90
Query: 61 SKAAQKK--AEATGEKRPRGRP 80
K G +P+G P
Sbjct: 91 RSPPGKPQGPPPQGGNQPQGPP 112
Score = 32.7 bits (73), Expect = 0.065
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 14/89 (15%)
Query: 11 PSTSAQGQPAAPAPQK-RGRGRPRKQQQEPTGEPSPKRPRGRP-KGSKNKSPSKAA---- 64
PS +P P P + +G P + +P G P P +P+G P +G K++SP
Sbjct: 39 PSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ 98
Query: 65 --------QKKAEATGEKRPRGRPRKWDN 85
Q + +P+G P + N
Sbjct: 99 GPPPQGGNQPQGPPPPPGKPQGPPPQGGN 127
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 12/76 (15%)
Query: 17 GQPAAPAPQKRGRGRPRKQQQEPTGEP--------SPKRPRGRPKGSKNKSPSKAAQKKA 68
G+P P PQ PR +P G P P P G+P+G P + +K
Sbjct: 136 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQGGKKPQ 191
Query: 69 EATGEKRPRGRPRKWD 84
+P+G P + D
Sbjct: 192 GPPPPGKPQGPPPQGD 207
Score = 30.8 bits (68), Expect = 0.25
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 5 GEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEP-----SPKRPRGRPKGSKNKS 59
G+ G P+ +A +P + +G P+++ P G P +P++P+ P G
Sbjct: 258 GKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGP 317
Query: 60 P 60
P
Sbjct: 318 P 318
Score = 30.8 bits (68), Expect = 0.25
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGR----------GRPRKQQQEPTGEPSPKRPRGRP 52
A+G Q + S G+P P PQ+ G G P++ Q P G+P +G P
Sbjct: 265 AQGGSKSQSARSPPGKPQGP-PQQEGNNPQGPPPPAGGNPQQPQAPPAGQP-----QGPP 318
Query: 53 KGSKNKSPSKAAQ 65
+ + PS+ Q
Sbjct: 319 RPPQGGRPSRPPQ 331
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 17 GQPAAPAPQKRGRGRPRKQQQEPTGEP--------SPKRPRGRPKGSKNKSPSKAAQKKA 68
G+P P PQ PR +P G P P P G+P+G P + +
Sbjct: 75 GKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP----PPQGGNRPQ 130
Query: 69 EATGEKRPRGRPRKWD 84
+P+G P + D
Sbjct: 131 GPPPPGKPQGPPPQGD 146
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 14 SAQGQPAAPAPQKRGRGRPRKQQQEPTGEPS------PKRPRGRPKGSKNKSPSKAAQK- 66
S G+P P PQ G + P G+P K+P+G P K + P K
Sbjct: 153 SPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKS 209
Query: 67 KAEATGEKRPRGRPRKWDN 85
++ + +P+G P + N
Sbjct: 210 RSSQSPPGKPQGPPPQGGN 228
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 11 PSTSAQGQP-------AAPAPQKRGRGRPRKQQQEPTGEPSPK-RPRGRPKGSKNK---- 58
P QG P ++ +P + +G P + +P G P P +P+G P NK
Sbjct: 195 PPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 254
Query: 59 -SPSK----AAQKKAEATGEKRPRGRPR 81
P K AQ +++ + P G+P+
Sbjct: 255 PPPGKPQGPPAQGGSKSQSARSPPGKPQ 282
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 14 SAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGE 73
S G+P P PQ G + P G+P P+G + P K +
Sbjct: 92 SPPGKPQGPPPQG---GNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKS 148
Query: 74 KRPRGRPRK 82
+ PR P K
Sbjct: 149 RSPRSPPGK 157
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 38.9 bits (89), Expect = 0.001
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
+PS + A P RGR R R + P G + R RGR +P A
Sbjct: 71 RPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGR------SAPGSAQPASGA 124
Query: 70 ATGEKRPRGRPRKWDNLLPRT--SSKKKTSLGNS 101
A P P WD P T S+K+ SLG+S
Sbjct: 125 AGPAAAPEAAPPAWD---PATLPPSRKRNSLGSS 155
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 38.9 bits (89), Expect = 0.001
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
+PS + A P RGR R R + P G + R RGR +P A
Sbjct: 71 RPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGR------SAPGSAQPASGA 124
Query: 70 ATGEKRPRGRPRKWDNLLPRT--SSKKKTSLGNS 101
A P P WD P T S+K+ SLG+S
Sbjct: 125 AGPAAAPEAAPPAWD---PATLPPSRKRNSLGSS 155
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 38.9 bits (89), Expect = 0.001
Identities = 30/94 (31%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 10 QPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAE 69
+PS + A P RGR R R + P G + R RGR +P A
Sbjct: 71 RPSRRHRAGCGAHGPGSRGRERRRGSRDPPAGPVARARARGR------SAPGSAQPASGA 124
Query: 70 ATGEKRPRGRPRKWDNLLPRT--SSKKKTSLGNS 101
A P P WD P T S+K+ SLG+S
Sbjct: 125 AGPAAAPEAAPPAWD---PATLPPSRKRNSLGSS 155
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.9 bits (89), Expect = 0.001
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 3 ARGEGAGQPSTSAQGQP-AAPAPQKRGRGRPRKQQQEPTGEPSPKRP------------- 48
A GAG P+ A+G P AAP P GR RP + G PSP+RP
Sbjct: 68 AGAAGAG-PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKL 126
Query: 49 RGRPKGSKNKSPSKAAQKKAEATGEKRPRG 78
R P+GS A A E P G
Sbjct: 127 RPPPEGSAGSCAPVPAAAAVAAGPEPAPAG 156
Score = 32.7 bits (73), Expect = 0.065
Identities = 21/69 (30%), Positives = 24/69 (34%)
Query: 8 AGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKK 67
A P+ +A PAAPAP P T P P G P + P AAQ
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNG 306
Query: 68 AEATGEKRP 76
A P
Sbjct: 307 GSAGAAPAP 315
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 1 MSARGEGAGQP-------STSAQGQPAAPA-PQKRGRGRPRK---------QQQEPTGEP 43
+S G AG P TSA QPA+ A P +G+GR + P P
Sbjct: 493 LSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASP 552
Query: 44 SPKRPRGRPKGSKNKSPSKAAQKKAEAT--GEKRPRGRPRK 82
SP+R G P+ ++ S S A KA G ++ +G P+K
Sbjct: 553 SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQK 593
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSK------ 56
+R G + A PA+P+PQ++ G P+ +Q P+P + G P G +
Sbjct: 533 SRPVAGGPGAPPAARPPASPSPQRQA-GPPQATRQTSVSGPAPPKASGAPPGGQQRQGPP 591
Query: 57 NKSPSKAAQKKAEATGEKRPRGRP 80
K P A + + PR P
Sbjct: 592 QKPPGPAGPTRQASQAGPVPRTGP 615
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 8 AGQPSTSA---QGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK---RPRGRPKGSKNKSPS 61
AG P+ QG P P P + +G P +Q+ P G+ P G P + SP+
Sbjct: 453 AGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPT 512
Query: 62 KAAQKKA-EATGEKRPRGR 79
A Q+ A +A + +GR
Sbjct: 513 SAPQQPASQAAPPTQGQGR 531
Score = 30.4 bits (67), Expect = 0.32
Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
G + Q A P P+ G P QQ P+G P GRPK + PS+ A
Sbjct: 596 GPAGPTRQASQAGPVPRT---GPPTTQQPRPSGPG----PAGRPKPQLAQKPSQDVPPPA 648
Query: 69 EATGEKRPRGRPRKWDNL 86
A P + K +L
Sbjct: 649 TAAAGGPPHPQLNKSQSL 666
Score = 26.2 bits (56), Expect = 6.1
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 11 PSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEA 70
P + GQ +P GR + Q+P G P+ +RP P P Q++
Sbjct: 428 PGRGSHGQTPSPGALPLGR----QTSQQPAGPPAQQRP---PPQGGPPQPGPGPQRQGPP 480
Query: 71 TGEKRPRGRPRKWDNLLPRTSSKKKTSLGNST 102
++ P + L P S L + T
Sbjct: 481 LQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPT 512
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 19/101 (18%)
Query: 1 MSARGEGAGQP-------STSAQGQPAAPA-PQKRGRGRPRK---------QQQEPTGEP 43
+S G AG P TSA QPA+ A P +G+GR + P P
Sbjct: 493 LSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASP 552
Query: 44 SPKRPRGRPKGSKNKSPSKAAQKKAEAT--GEKRPRGRPRK 82
SP+R G P+ ++ S S A KA G ++ +G P+K
Sbjct: 553 SPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQK 593
Score = 33.5 bits (75), Expect = 0.038
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 3 ARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSK------ 56
+R G + A PA+P+PQ++ G P+ +Q P+P + G P G +
Sbjct: 533 SRPVAGGPGAPPAARPPASPSPQRQA-GPPQATRQTSVSGPAPPKASGAPPGGQQRQGPP 591
Query: 57 NKSPSKAAQKKAEATGEKRPRGRP 80
K P A + + PR P
Sbjct: 592 QKPPGPAGPTRQASQAGPVPRTGP 615
Score = 31.6 bits (70), Expect = 0.14
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 8 AGQPSTSA---QGQPAAPAPQKRGRGRPRKQQQEPTGEPSPK---RPRGRPKGSKNKSPS 61
AG P+ QG P P P + +G P +Q+ P G+ P G P + SP+
Sbjct: 453 AGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPT 512
Query: 62 KAAQKKA-EATGEKRPRGR 79
A Q+ A +A + +GR
Sbjct: 513 SAPQQPASQAAPPTQGQGR 531
Score = 29.3 bits (64), Expect = 0.72
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 9 GQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKA 68
G + Q A P P+ G P QQ P+G P GRPK + PS+ A
Sbjct: 596 GPAGPTRQASQAGPVPRT---GPPTTQQPRPSGPG----PAGRPKPQLAQKPSQDVPPPA 648
Query: 69 EATGEKRP 76
A P
Sbjct: 649 TAAAGGPP 656
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 11 PSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKA 63
P T+ Q +P+ P P R + + ++ + P+ G P SP++A
Sbjct: 615 PPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQA 667
Score = 26.2 bits (56), Expect = 6.1
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 11 PSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEA 70
P + GQ +P GR + Q+P G P+ +RP P P Q++
Sbjct: 428 PGRGSHGQTPSPGALPLGR----QTSQQPAGPPAQQRP---PPQGGPPQPGPGPQRQGPP 480
Query: 71 TGEKRPRGRPRKWDNLLPRTSSKKKTSLGNST 102
++ P + L P S L + T
Sbjct: 481 LQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPT 512
>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
Length = 1247
Score = 38.9 bits (89), Expect = 0.001
Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 15 AQGQPAAPAPQKRGRGRPRKQQQE--PTGEPSPKRPR---GRPKGSKNKSPSKAAQKKAE 69
A G P P + +GR KQ E P E KR R P SKNK P+ A K+
Sbjct: 1055 ADGFPVKPKSTEGMKGRKGKQVSEILPKAEVQSKRKRTEGSSPPDSKNKGPTVKASKEKH 1114
Query: 70 ATG------EKRPRGRPRKWDNLLPRTSSKKKTSL 98
A G KRP R R + KKTSL
Sbjct: 1115 ADGATKTPAAKRPAARDRS-------SQPPKKTSL 1142
>gi|19557702 surfeit 6 [Homo sapiens]
Length = 361
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 23 APQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRK 82
AP+++ R R K Q T P PK+ R + + K KAA+ KA++ GEK P +
Sbjct: 23 APEQQARTRAGKTQGSETAGP-PKKKRKKTQKKFRKREEKAAEHKAKSLGEKSPAASGAR 81
Query: 83 WDNLLPRTSSKKKTSLGN 100
++ +S GN
Sbjct: 82 RPEAAKEEAAWASSSAGN 99
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 38.9 bits (89), Expect = 0.001
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 19 PAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEAT--GEKRP 76
P P++RGR +P K +++ P RPRGRP+ + P+ A A G K+P
Sbjct: 1147 PGPDGPRRRGR-KPTKAKRD-----GPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKP 1200
Query: 77 RGRPR 81
RGR R
Sbjct: 1201 RGRGR 1205
Score = 32.3 bits (72), Expect = 0.085
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 13 TSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSPSKAAQKKAEATG 72
T P PAP+K RP ++++E +RP +G + S + +++ ATG
Sbjct: 1718 TPETAMPEPPAPEKPSLLRPVEKEKEKEKVTRGERPL---RGERATSGRQTRPERSLATG 1774
Query: 73 E----KRPRGRPRKWDNLLPRTSSKK--KTSLGNST 102
+ + P+ RP K P KK K + GN+T
Sbjct: 1775 QPATSRLPKARPTKVKAEPPPKKRKKWLKEAGGNAT 1810
Score = 26.9 bits (58), Expect = 3.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 18 QPAAPAPQKRGRGRPRKQQQEPTG---EPSP---KRPRGRP 52
+P PAP G G P + ++P G PSP K PR P
Sbjct: 888 EPLPPAPGDTGVGPPNSEGKDPAGAYRSPSPQGTKAPRFVP 928
Score = 26.9 bits (58), Expect = 3.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 43 PSPKRPRGRPKGSKNKSPSKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTS 97
P P PR R + P+KA + G RPRGRPR +P T+ S
Sbjct: 1147 PGPDGPRRR-----GRKPTKAKRD-----GPPRPRGRPRIRPLEVPTTAGPASAS 1191
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.302 0.121 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,639
Number of Sequences: 37866
Number of extensions: 388549
Number of successful extensions: 5446
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 695
Number of HSP's that attempted gapping in prelim test: 3194
Number of HSP's gapped (non-prelim): 2546
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.