HMGA1 28840

Name: HMGA1	Sequence: fasta or formatted (96aa)		NCBI GI: 4504433
Description: high mobility group AT-hook 1 isoform b		Referenced in: Nonhistone Chromosomal Proteins
Other entries for this name: alt prot [107aa] high mobility group AT-hook 1 isoform a alt prot [107aa] high mobility group AT-hook 1 isoform a alt mRNA [96aa] high mobility group AT-hook 1 isoform b alt mRNA [96aa] high mobility group AT-hook 1 isoform b alt mRNA [96aa] high mobility group AT-hook 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.1 3 2 C cysteine 0.0 0 0 D aspartate 1.0 1 1 E glutamate 14.6 14 4 F phenylalanine 0.0 0 0 G glycine 9.4 9 1 H histidine 0.0 0 0 I isoleucine 1.0 1 1 K lysine 16.7 16 2 L leucine 2.1 2 1 M methionine 1.0 1 1 N asparagine 1.0 1 1 P proline 12.5 12 2 Q glutamine 5.2 5 1 R arginine 11.5 11 1 S serine 12.5 12 3 T threonine 7.3 7 4 V valine 1.0 1 1 W tryptophan 0.0 0 0 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 high mobility group AT-hook 1 isoform b HMGA1 1.000 high mobility group AT-hook 1 isoform b HMGA1 1.000 high mobility group AT-hook 1 isoform b HMGA1 1.000 high mobility group AT-hook 1 isoform b HMGA1 0.953 high mobility group AT-hook 1 isoform a HMGA1 0.953 high mobility group AT-hook 1 isoform a LOC100130009 0.906 PREDICTED: hypothetical protein LOC100130009 0.906 PREDICTED: hypothetical protein LOC100130009 0.906 PREDICTED: hypothetical protein HMGA2 0.353 high mobility group AT-hook 2 isoform a HMGA2 0.306 high mobility group AT-hook 2 isoform b REXO1 0.118 transcription elongation factor B polypeptide 3 bin... CTDP1 0.088 CTD (carboxy-terminal domain, RNA polymerase II, pol... LOC100292370 0.088 PREDICTED: hypothetical protein LOC100133599 0.082 PREDICTED: hypothetical protein THOC2 0.082 THO complex 2 LOC100133599 0.082 PREDICTED: hypothetical protein CHD7 0.082 chromodomain helicase DNA binding protein 7 LOC100294088 0.076 PREDICTED: hypothetical protein, partial TULP1 0.076 tubby like protein 1 CIC 0.076 capicua homolog PRB1 0.076 proline-rich protein BstNI subfamily 1 isoform 2 pre... HDGF2 0.076 hepatoma-derived growth factor-related protein 2 iso... HDGF2 0.076 hepatoma-derived growth factor-related protein 2 iso... SFRS4 0.076 splicing factor, arginine/serine-rich 4 EIF5B 0.076 eukaryotic translation initiation factor 5B ADRB1 0.071 beta-1-adrenergic receptor CDT1 0.071 chromatin licensing and DNA replication factor 1 [H... LOC100133698 0.071 PREDICTED: hypothetical protein HIST1H1C 0.071 histone cluster 1, H1c Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.