HMGA1 14297

Name: HMGA1	Sequence: fasta or formatted (107aa)		NCBI GI: 22208967
Description: high mobility group AT-hook 1 isoform a		Referenced in: Nonhistone Chromosomal Proteins
Other entries for this name: alt mRNA [107aa] high mobility group AT-hook 1 isoform a alt prot [96aa] high mobility group AT-hook 1 isoform b alt prot [96aa] high mobility group AT-hook 1 isoform b alt prot [96aa] high mobility group AT-hook 1 isoform b alt prot [96aa] high mobility group AT-hook 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.7 4 2 C cysteine 0.0 0 0 D aspartate 0.9 1 1 E glutamate 13.1 14 4 F phenylalanine 0.0 0 0 G glycine 10.3 11 1 H histidine 0.0 0 0 I isoleucine 0.9 1 1 K lysine 15.0 16 2 L leucine 2.8 3 1 M methionine 0.9 1 1 N asparagine 0.9 1 1 P proline 12.1 13 2 Q glutamine 5.6 6 1 R arginine 10.3 11 1 S serine 13.1 14 3 T threonine 7.5 8 4 V valine 2.8 3 1 W tryptophan 0.0 0 0 Y tyrosine 0.0 0 0			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 high mobility group AT-hook 1 isoform a HMGA1 1.000 high mobility group AT-hook 1 isoform a HMGA1 0.848 high mobility group AT-hook 1 isoform b HMGA1 0.848 high mobility group AT-hook 1 isoform b HMGA1 0.848 high mobility group AT-hook 1 isoform b HMGA1 0.848 high mobility group AT-hook 1 isoform b LOC100130009 0.759 PREDICTED: hypothetical protein LOC100130009 0.759 PREDICTED: hypothetical protein LOC100130009 0.759 PREDICTED: hypothetical protein HMGA2 0.304 high mobility group AT-hook 2 isoform a HMGA2 0.262 high mobility group AT-hook 2 isoform b REXO1 0.089 transcription elongation factor B polypeptide 3 bin... PRB2 0.073 proline-rich protein BstNI subfamily 2 MYST4 0.073 MYST histone acetyltransferase (monocytic leukemia)... NOLC1 0.073 nucleolar and coiled-body phosphoprotein 1 PRR12 0.073 proline rich 12 TDG 0.068 thymine-DNA glycosylase PRB1 0.063 proline-rich protein BstNI subfamily 1 isoform 1 pre... AKAP12 0.063 A kinase (PRKA) anchor protein 12 isoform 1 AKAP12 0.063 A kinase (PRKA) anchor protein 12 isoform 2 RSL1D1 0.063 ribosomal L1 domain containing 1 GTF3C2 0.063 general transcription factor IIIC, polypeptide 2, be... GTF3C2 0.063 general transcription factor IIIC, polypeptide 2, bet... CTDP1 0.058 CTD (carboxy-terminal domain, RNA polymerase II, pol... LOC100127891 0.058 PREDICTED: hypothetical protein MLL3 0.058 myeloid/lymphoid or mixed-lineage leukemia 3 HIST1H1C 0.058 histone cluster 1, H1c ACIN1 0.058 apoptotic chromatin condensation inducer 1 SR140 0.058 U2-associated SR140 protein LOC283999 0.052 hypothetical protein LOC283999 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.