Search of human proteins with 62865637

Search of human proteins with 62865637

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
sapiens]
         (412 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo s...   840   0.0  
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ...   296   3e-80
gi|5453638 AT rich interactive domain 3B [Homo sapiens]               264   1e-70
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...   103   2e-22
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...   102   8e-22
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...   102   8e-22
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     94   2e-19
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     94   2e-19
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]     86   6e-17
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]     86   6e-17
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ...    83   5e-16
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s...    83   5e-16
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa...    83   5e-16
gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo ...    69   6e-12
gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo sa...    63   4e-10
gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo sa...    63   4e-10
gi|47078224 AT rich interactive domain 5A [Homo sapiens]               57   4e-08
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H...    55   9e-08
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho...    54   2e-07
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H...    54   2e-07
gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo sapi...    53   6e-07
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    49   8e-06
gi|91208420 bassoon protein [Homo sapiens]                             48   1e-05
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r...    48   2e-05
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re...    48   2e-05

>gi|62865637 AT rich interactive domain 3C (BRIGHT- like) [Homo
           sapiens]
          Length = 412

 Score =  840 bits (2169), Expect = 0.0
 Identities = 412/412 (100%), Positives = 412/412 (100%)

Query: 1   MEALQKQQAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEEEDAEEDE 60
           MEALQKQQAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEEEDAEEDE
Sbjct: 1   MEALQKQQAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEEEDAEEDE 60

Query: 61  EKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFL 120
           EKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFL
Sbjct: 61  EKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFL 120

Query: 121 DDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPT 180
           DDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPT
Sbjct: 121 DDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPT 180

Query: 181 TITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGP 240
           TITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGP
Sbjct: 181 TITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGP 240

Query: 241 PPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLAL 300
           PPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLAL
Sbjct: 241 PPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLAL 300

Query: 301 PVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLA 360
           PVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLA
Sbjct: 301 PVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLA 360

Query: 361 GSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPSSILP 412
           GSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPSSILP
Sbjct: 361 GSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPSSILP 412


>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
           [Homo sapiens]
          Length = 593

 Score =  296 bits (757), Expect = 3e-80
 Identities = 204/443 (46%), Positives = 249/443 (56%), Gaps = 106/443 (23%)

Query: 42  EGALGNVGAEEEEDAEEDEEKREE------------------------------------ 65
           E  LG    EEEED E++EE+ +E                                    
Sbjct: 133 EEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPPQAFRGDGVPRVL 192

Query: 66  AGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFS 125
            G E      + PG     +P  QPP     +WTYEEQFKQLYELD DPKRKEFLDDLFS
Sbjct: 193 GGQERPGPGPAHPGGAAHVAPQLQPPD--HGDWTYEEQFKQLYELDGDPKRKEFLDDLFS 250

Query: 126 FMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSA 185
           FMQKRGTPVNR+PIMAKQVLDL+ L+ LVT KGGLVEVIN+K+WRE+T+GL+LPT+ITSA
Sbjct: 251 FMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSA 310

Query: 186 AFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGA 245
           AFTLRTQYMKYLYPYECE R LS+P ELQAAIDSNRREGRRQ++  + LF  +   P GA
Sbjct: 311 AFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGS-LFAYS---PGGA 366

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSP-IKKEE-SGIPNPCLA-LPV 302
                G   +P    SS G A  ST+G      + ++P+P IKKEE S IP      LPV
Sbjct: 367 H----GMLSSPKLPVSSLGLA-ASTNG------SSITPAPKIKKEEDSAIPITVPGRLPV 415

Query: 303 GLALGPT---------------------------REKLAPEEPPEKRAVLMGPMDP--PR 333
            LA  P                            REKL   EPPEK+  L+        +
Sbjct: 416 SLAGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQ 475

Query: 334 PCMPPSFLP-RGKVPL--------REERLDGPLNLAG-SGISSINMALEINGVVYTGVLF 383
             +  +FL    ++P+         E R D  +NL G +G +SI+M++EING++YTGVLF
Sbjct: 476 RALQQNFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLF 535

Query: 384 ARRQPVPASQGPTNPAPPPSTGP 406
           A  QP         PAP P++ P
Sbjct: 536 A--QP---------PAPTPTSAP 547


>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
          Length = 560

 Score =  264 bits (674), Expect = 1e-70
 Identities = 200/508 (39%), Positives = 258/508 (50%), Gaps = 110/508 (21%)

Query: 8   QAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEE----EDAEEDEEKR 63
           Q   L+   G  + + PL P     P     Q  E    N   EEE    ED + D+E  
Sbjct: 49  QPTLLSATAGRPSGSTPLGPLARVPPTAAVAQVFERGNMNSEPEEEDGGLEDEDGDDEVA 108

Query: 64  EEAGAEEEAAEE----SRPGAQGPS-SPSSQ---PPGLHPH------------------- 96
           E A  E +AA +     +   Q P  +P S     PGL PH                   
Sbjct: 109 EVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPAPGLPPHGQQAKEDHTKDASKASPSV 168

Query: 97  ------EWTYEEQFKQ------------------------LYELDADPKRKEFLDDLFSF 126
                  W  +EQ KQ                        LYELD DP+RKEFLDDLF F
Sbjct: 169 STAGQPNWNLDEQLKQNGGLAWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVF 228

Query: 127 MQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAA 186
           MQKRGTP+NR+PIMAKQ+LDLY L++LVT KGGLVE+IN+K+WRE+T+GL+LPT+ITSAA
Sbjct: 229 MQKRGTPINRIPIMAKQILDLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAA 288

Query: 187 FTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQ 246
           FTLRTQYMKYLY YECE +ALSSP ELQAAID NRREGRR +Y+++ LFG + P    A 
Sbjct: 289 FTLRTQYMKYLYAYECEKKALSSPAELQAAIDGNRREGRRPSYSSS-LFGYS-PAAATAA 346

Query: 247 DPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESG-------IPNPCLA 299
             A  P    P     P    GS+SG    +  ++SP+   ++  G       +PN  LA
Sbjct: 347 AAAGAPALLSPPKIRFPILGLGSSSGTNT-SSPRISPATTLRKGDGAPVTTVPVPNR-LA 404

Query: 300 LPVGL----------ALGPTREKLAPEEPPEKRAVLMGPMDP---PRPCMPPSFLPRGKV 346
           +PV L          AL   RE+L   EP EK+A  +   +     +      F    ++
Sbjct: 405 VPVTLASQQAGTRTAALEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQL 464

Query: 347 PL------REERLD---GPLNLAGSGISSINMALEINGVVYTGVLFARRQPV-------P 390
           P+      RE+R +     LNL  S I SINM+++I+G  Y GVLFA++  V       P
Sbjct: 465 PMKIRINGREDRAEASAAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAP 524

Query: 391 ASQGPT---------NPAPPPSTGPPSS 409
            S G +         +P+P  S G PS+
Sbjct: 525 QSLGSSASSSSSSHCSPSPTSSRGTPSA 552


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
            sapiens]
          Length = 2231

 Score =  103 bits (258), Expect = 2e-22
 Identities = 101/349 (28%), Positives = 161/349 (46%), Gaps = 30/349 (8%)

Query: 70   EEAAEESRPG-AQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQ 128
            +E+   S PG  + PSSP S          T  E+  ++YEL  +P+RK ++D   +FM+
Sbjct: 1010 DESDSISSPGWPKTPSSPKSSS------STTTGEKITKVYELGNEPERKLWVDRYLTFME 1063

Query: 129  KRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFT 188
            +RG+PV+ +P + K+ LDL+ L+  V   GGL +V   K WRE+   L++ T+ +SAA +
Sbjct: 1064 ERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTS-SSAASS 1122

Query: 189  LRTQYMKYLYPYECE-TRALSSPGELQAAIDSNRREGRRQAYTAT--PLFGLAGPPPRGA 245
            L+ QY++YL+ +EC+  R    P E+ +  D+ ++   +    A    L G   P   G+
Sbjct: 1123 LKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGS 1182

Query: 246  QDPALGPGPAPPATQSSPGPAQ------GSTSGLPAH-ACAQLSPSPIKKEESGIPNPCL 298
               A  PG   P T +S    Q      G +S +  H   + +S S   K  S  PN   
Sbjct: 1183 NSMAEVPGDLKPPTPASTPHGQMTPMQGGRSSTISVHDPFSDVSDSSFPKRNSMTPN--A 1240

Query: 299  ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLN 358
                G+++     ++ P EP   +    G    P    P  F+ +G++P     +    N
Sbjct: 1241 PYQQGMSMPDVMGRM-PYEP--NKDPFGGMRKVPGSSEP--FMTQGQMP--NSSMQDMYN 1293

Query: 359  LAGSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPP 407
             + SG  S N+ +        G  + RR      Q P     PPS  PP
Sbjct: 1294 QSPSGAMS-NLGMGQRQQFPYGASYDRRHEPYGQQYPGQ--GPPSGQPP 1339



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 17/96 (17%)

Query: 208 SSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQ 267
           S  G++ A I S ++      Y   P     GP    ++ PA      P A+ S PGP  
Sbjct: 748 SPGGQMHAGISSFQQSNSSGTYG--PQMSQYGPQGNYSRPPAYSG--VPSASYSGPGPGM 803

Query: 268 GSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVG 303
           G ++    H               G   PC A+P+G
Sbjct: 804 GISANNQMHG-------------QGPSQPCGAVPLG 826



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 27   PPQPPLPDHRTLQAPEGALGNVGAEEEEDA------EEDEEKREEAGAEEEAAEESRPGA 80
            P Q  L  +   +    +L +   +EEEDA      EEDEE  EE   + E+ E+S    
Sbjct: 1688 PSQKALDHNAARKDDSQSLADDSGKEEEDAECIDDDEEDEEDEEEDSEKTESDEKSSIAL 1747

Query: 81   QGP---SSPSSQP 90
              P   + P  +P
Sbjct: 1748 TAPDAAADPKEKP 1760



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 258 ATQSSPGPAQGSTSGL-----PAHACAQLSPSPIKKEESGIPNPCLALPVGLALGPTREK 312
           AT SS   A GSTS       PA +      SP      G P+P    PVG  +G  + +
Sbjct: 623 ATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPS---PVGSPVGSNQSR 679

Query: 313 LAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREER 352
             P  P       M P  P       S     + P+ +ER
Sbjct: 680 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQER 719


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo
            sapiens]
          Length = 2191

 Score =  102 bits (253), Expect = 8e-22
 Identities = 98/347 (28%), Positives = 157/347 (45%), Gaps = 30/347 (8%)

Query: 71   EAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKR 130
            +  EE  P  +  S  SS          T  E+  ++YEL  +P+RK ++D   +FM++R
Sbjct: 973  DGKEEGTPQPESKSKKSSSST-------TTGEKITKVYELGNEPERKLWVDRYLTFMEER 1025

Query: 131  GTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLR 190
            G+PV+ +P + K+ LDL+ L+  V   GGL +V   K WRE+   L++ T+ +SAA +L+
Sbjct: 1026 GSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTS-SSAASSLK 1084

Query: 191  TQYMKYLYPYECE-TRALSSPGELQAAIDSNRREGRRQAYTAT--PLFGLAGPPPRGAQD 247
             QY++YL+ +EC+  R    P E+ +  D+ ++   +    A    L G   P   G+  
Sbjct: 1085 KQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNS 1144

Query: 248  PALGPGPAPPATQSSPGPAQ------GSTSGLPAH-ACAQLSPSPIKKEESGIPNPCLAL 300
             A  PG   P T +S    Q      G +S +  H   + +S S   K  S  PN     
Sbjct: 1145 MAEVPGDLKPPTPASTPHGQMTPMQGGRSSTISVHDPFSDVSDSSFPKRNSMTPN--APY 1202

Query: 301  PVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLA 360
              G+++     ++ P EP   +    G    P    P  F+ +G++P     +    N +
Sbjct: 1203 QQGMSMPDVMGRM-PYEP--NKDPFGGMRKVPGSSEP--FMTQGQMP--NSSMQDMYNQS 1255

Query: 361  GSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPP 407
             SG  S N+ +        G  + RR      Q P     PPS  PP
Sbjct: 1256 PSGAMS-NLGMGQRQQFPYGASYDRRHEPYGQQYPGQ--GPPSGQPP 1299



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 17/96 (17%)

Query: 208 SSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQ 267
           S  G++ A I S ++      Y   P     GP    ++ PA      P A+ S PGP  
Sbjct: 761 SPGGQMHAGISSFQQSNSSGTYG--PQMSQYGPQGNYSRPPAYSG--VPSASYSGPGPGM 816

Query: 268 GSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVG 303
           G ++    H               G   PC A+P+G
Sbjct: 817 GISANNQMHG-------------QGPSQPCGAVPLG 839



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 27   PPQPPLPDHRTLQAPEGALGNVGAEEEEDA------EEDEEKREEAGAEEEAAEESRPGA 80
            P Q  L  +   +    +L +   +EEEDA      EEDEE  EE   + E+ E+S    
Sbjct: 1648 PSQKALDHNAARKDDSQSLADDSGKEEEDAECIDDDEEDEEDEEEDSEKTESDEKSSIAL 1707

Query: 81   QGP---SSPSSQP 90
              P   + P  +P
Sbjct: 1708 TAPDAAADPKEKP 1720



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 258 ATQSSPGPAQGSTSGL-----PAHACAQLSPSPIKKEESGIPNPCLALPVGLALGPTREK 312
           AT SS   A GSTS       PA +      SP      G P+P    PVG  +G  + +
Sbjct: 636 ATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPS---PVGSPVGSNQSR 692

Query: 313 LAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREER 352
             P  P       M P  P       S     + P+ +ER
Sbjct: 693 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQER 732


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo
            sapiens]
          Length = 2178

 Score =  102 bits (253), Expect = 8e-22
 Identities = 98/347 (28%), Positives = 157/347 (45%), Gaps = 30/347 (8%)

Query: 71   EAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKR 130
            +  EE  P  +  S  SS          T  E+  ++YEL  +P+RK ++D   +FM++R
Sbjct: 960  DGKEEGTPQPESKSKKSSSST-------TTGEKITKVYELGNEPERKLWVDRYLTFMEER 1012

Query: 131  GTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLR 190
            G+PV+ +P + K+ LDL+ L+  V   GGL +V   K WRE+   L++ T+ +SAA +L+
Sbjct: 1013 GSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTS-SSAASSLK 1071

Query: 191  TQYMKYLYPYECE-TRALSSPGELQAAIDSNRREGRRQAYTAT--PLFGLAGPPPRGAQD 247
             QY++YL+ +EC+  R    P E+ +  D+ ++   +    A    L G   P   G+  
Sbjct: 1072 KQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNS 1131

Query: 248  PALGPGPAPPATQSSPGPAQ------GSTSGLPAH-ACAQLSPSPIKKEESGIPNPCLAL 300
             A  PG   P T +S    Q      G +S +  H   + +S S   K  S  PN     
Sbjct: 1132 MAEVPGDLKPPTPASTPHGQMTPMQGGRSSTISVHDPFSDVSDSSFPKRNSMTPN--APY 1189

Query: 301  PVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLA 360
              G+++     ++ P EP   +    G    P    P  F+ +G++P     +    N +
Sbjct: 1190 QQGMSMPDVMGRM-PYEP--NKDPFGGMRKVPGSSEP--FMTQGQMP--NSSMQDMYNQS 1242

Query: 361  GSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPP 407
             SG  S N+ +        G  + RR      Q P     PPS  PP
Sbjct: 1243 PSGAMS-NLGMGQRQQFPYGASYDRRHEPYGQQYPGQ--GPPSGQPP 1286



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 17/96 (17%)

Query: 208 SSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQ 267
           S  G++ A I S ++      Y   P     GP    ++ PA      P A+ S PGP  
Sbjct: 748 SPGGQMHAGISSFQQSNSSGTYG--PQMSQYGPQGNYSRPPAYSG--VPSASYSGPGPGM 803

Query: 268 GSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVG 303
           G ++    H               G   PC A+P+G
Sbjct: 804 GISANNQMHG-------------QGPSQPCGAVPLG 826



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 27   PPQPPLPDHRTLQAPEGALGNVGAEEEEDA------EEDEEKREEAGAEEEAAEESRPGA 80
            P Q  L  +   +    +L +   +EEEDA      EEDEE  EE   + E+ E+S    
Sbjct: 1635 PSQKALDHNAARKDDSQSLADDSGKEEEDAECIDDDEEDEEDEEEDSEKTESDEKSSIAL 1694

Query: 81   QGP---SSPSSQP 90
              P   + P  +P
Sbjct: 1695 TAPDAAADPKEKP 1707



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 29/100 (29%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 258 ATQSSPGPAQGSTSGL-----PAHACAQLSPSPIKKEESGIPNPCLALPVGLALGPTREK 312
           AT SS   A GSTS       PA +      SP      G P+P    PVG  +G  + +
Sbjct: 623 ATLSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPS---PVGSPVGSNQSR 679

Query: 313 LAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREER 352
             P  P       M P  P       S     + P+ +ER
Sbjct: 680 SGPISPASIPGSQMPPQPPGSQSESSSHPALSQSPMPQER 719


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 13/209 (6%)

Query: 99   TYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKG 158
            T  E+  +LYEL  +P+RK ++D   +F +++   +  +P + ++ LDLY L+  V   G
Sbjct: 1003 TTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIG 1062

Query: 159  GLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECE-TRALSSPGELQAAI 217
            GL +V   K WRE+   L++ T+ +SAA +L+ QY++ LY +EC+  R    P ++ AA 
Sbjct: 1063 GLTQVNKNKKWRELATNLNVGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAA 1121

Query: 218  DSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPG-----PAPPATQSS-----PGPAQ 267
            DS + + + Q  +      + GP    +   ++  G     P P +T  S     PG ++
Sbjct: 1122 DSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSR 1181

Query: 268  GSTSGLPAHACAQLSPSPIKKEESGIPNP 296
             ++ G+   A    S S  +K  S  PNP
Sbjct: 1182 SNSVGI-QDAFNDGSDSTFQKRNSMTPNP 1209



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 241  PPRGAQDPALGP-GPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLA 299
            P  G + P  GP  P PP T+  P   Q   S +  H     SP+P+ +      +P  +
Sbjct: 1546 PSHGTRQPPYGPSAPVPPMTRPPPSNYQPPPS-MQNHIPQVSSPAPLPRPMENRTSP--S 1602

Query: 300  LPVGLALGPTREKLAPEEPPEKRAVLMGPMDPP 332
                L  G   +K  P  P     +   P+ PP
Sbjct: 1603 KSPFLHSGMKMQKAGPPVPASH--IAPAPVQPP 1633


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 63/209 (30%), Positives = 108/209 (51%), Gaps = 13/209 (6%)

Query: 99   TYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKG 158
            T  E+  +LYEL  +P+RK ++D   +F +++   +  +P + ++ LDLY L+  V   G
Sbjct: 1003 TTNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIG 1062

Query: 159  GLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECE-TRALSSPGELQAAI 217
            GL +V   K WRE+   L++ T+ +SAA +L+ QY++ LY +EC+  R    P ++ AA 
Sbjct: 1063 GLTQVNKNKKWRELATNLNVGTS-SSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAA 1121

Query: 218  DSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPG-----PAPPATQSS-----PGPAQ 267
            DS + + + Q  +      + GP    +   ++  G     P P +T  S     PG ++
Sbjct: 1122 DSKKSQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSR 1181

Query: 268  GSTSGLPAHACAQLSPSPIKKEESGIPNP 296
             ++ G+   A    S S  +K  S  PNP
Sbjct: 1182 SNSVGI-QDAFNDGSDSTFQKRNSMTPNP 1209


>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
          Length = 1226

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 35/152 (23%)

Query: 50  AEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYE 109
           AEEEE+ E+DE+++E+  +EEE  EE  P                P E            
Sbjct: 278 AEEEEEEEDDEKEKEDNSSEEE--EEIEP---------------FPEE------------ 308

Query: 110 LDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVW 169
                 R+ FL  L+ FM+ RGTP+N+ P++  + L+L+ LFRLV   GG   + +  VW
Sbjct: 309 ------RENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVW 362

Query: 170 REVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           ++V + L +P   ++A + ++  Y KYLY +E
Sbjct: 363 KQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFE 394


>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
          Length = 1312

 Score = 85.9 bits (211), Expect = 6e-17
 Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 35/152 (23%)

Query: 50  AEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYE 109
           AEEEE+ E+DE+++E+  +EEE  EE  P                P E            
Sbjct: 278 AEEEEEEEDDEKEKEDNSSEEE--EEIEP---------------FPEE------------ 308

Query: 110 LDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVW 169
                 R+ FL  L+ FM+ RGTP+N+ P++  + L+L+ LFRLV   GG   + +  VW
Sbjct: 309 ------RENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVW 362

Query: 170 REVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           ++V + L +P   ++A + ++  Y KYLY +E
Sbjct: 363 KQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFE 394



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 34  DHRTLQAPEGALGNVGAEEE----------EDAEEDEEKREEAGAEEEAAEESRPGAQGP 83
           D  T +  E     V AEEE          E+ E+DEE  EE   EEE  +E        
Sbjct: 504 DDDTTRVDESLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEE 563

Query: 84  SSPSSQPPGL 93
                 PPG+
Sbjct: 564 EEFECYPPGM 573


>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
           sapiens]
          Length = 1188

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 34/171 (19%)

Query: 32  LPDHRTLQAPEGALGNVGAEEEEDAEE-DEEKREEAGAEEEAAEESRPGAQGPSSPSSQP 90
           +PD+  +   E    +   +E+  AEE DEEK +EA   EE   E               
Sbjct: 260 VPDNWKMDISEILESSSSDDEDGPAEENDEEKEKEAKKTEEEVPEE-------------- 305

Query: 91  PGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYAL 150
                             ELD + +R  FL  L+ FM+ RGTP+N+ P++  + L+L+ L
Sbjct: 306 ------------------ELDPE-ERDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKL 346

Query: 151 FRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           FRLV  +GG   + +  VW+++   L +P   ++A++ ++T Y KYLY +E
Sbjct: 347 FRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397


>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
           sapiens]
          Length = 1203

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 34/171 (19%)

Query: 32  LPDHRTLQAPEGALGNVGAEEEEDAEE-DEEKREEAGAEEEAAEESRPGAQGPSSPSSQP 90
           +PD+  +   E    +   +E+  AEE DEEK +EA   EE   E               
Sbjct: 260 VPDNWKMDISEILESSSSDDEDGPAEENDEEKEKEAKKTEEEVPEE-------------- 305

Query: 91  PGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYAL 150
                             ELD + +R  FL  L+ FM+ RGTP+N+ P++  + L+L+ L
Sbjct: 306 ------------------ELDPE-ERDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKL 346

Query: 151 FRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           FRLV  +GG   + +  VW+++   L +P   ++A++ ++T Y KYLY +E
Sbjct: 347 FRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397


>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
           sapiens]
          Length = 1257

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 34/171 (19%)

Query: 32  LPDHRTLQAPEGALGNVGAEEEEDAEE-DEEKREEAGAEEEAAEESRPGAQGPSSPSSQP 90
           +PD+  +   E    +   +E+  AEE DEEK +EA   EE   E               
Sbjct: 260 VPDNWKMDISEILESSSSDDEDGPAEENDEEKEKEAKKTEEEVPEE-------------- 305

Query: 91  PGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYAL 150
                             ELD + +R  FL  L+ FM+ RGTP+N+ P++  + L+L+ L
Sbjct: 306 ------------------ELDPE-ERDNFLQQLYKFMEDRGTPINKPPVLGYKDLNLFKL 346

Query: 151 FRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           FRLV  +GG   + +  VW+++   L +P   ++A++ ++T Y KYLY +E
Sbjct: 347 FRLVYHQGGCDNIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKYLYGFE 397


>gi|56549668 AT rich interactive domain 2 (ARID, RFX-like) [Homo
           sapiens]
          Length = 1835

 Score = 69.3 bits (168), Expect = 6e-12
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 113 DPKRK--EFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWR 170
           D +RK   FLD+L  F   RG+P  ++P +  + LDL+ L+  VT  GG  +V  +  W 
Sbjct: 11  DERRKGLAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWG 70

Query: 171 EVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           E+    + P + ++AAF L+  Y++YL  YE
Sbjct: 71  EIVEEFNFPRSCSNAAFALKQYYLRYLEKYE 101


>gi|110618244 retinoblastoma binding protein 2 isoform 1 [Homo
           sapiens]
          Length = 1690

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 89  QPP-GLHPHEWTYEEQFKQLYELDADPK-RKEFLDDLFSFMQKRGTPVNRVPIMAKQVLD 146
           QPP       + +  + ++L EL+A  + R +FLD L  F + +G+ + ++P++ +++LD
Sbjct: 58  QPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILD 116

Query: 147 LYALFRLVTAKGGLVEVINRKVWREVTRGLS-LPTTITSAAFTLRTQYMKYLYPYECETR 205
           LYAL ++V +KGG   V   K W +V   L  LP   T +   L++ Y + LYPYE    
Sbjct: 117 LYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGS--LLKSHYERILYPYELFQS 174

Query: 206 ALSSPGELQAAID 218
            +S  G     +D
Sbjct: 175 GVSLMGVQMPNLD 187


>gi|110618242 retinoblastoma binding protein 2 isoform 2 [Homo
           sapiens]
          Length = 1641

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%)

Query: 89  QPP-GLHPHEWTYEEQFKQLYELDADPK-RKEFLDDLFSFMQKRGTPVNRVPIMAKQVLD 146
           QPP       + +  + ++L EL+A  + R +FLD L  F + +G+ + ++P++ +++LD
Sbjct: 58  QPPFACEVKSFRFTPRVQRLNELEAMTRVRLDFLDQLAKFWELQGSTL-KIPVVERKILD 116

Query: 147 LYALFRLVTAKGGLVEVINRKVWREVTRGLS-LPTTITSAAFTLRTQYMKYLYPYECETR 205
           LYAL ++V +KGG   V   K W +V   L  LP   T +   L++ Y + LYPYE    
Sbjct: 117 LYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGS--LLKSHYERILYPYELFQS 174

Query: 206 ALSSPGELQAAID 218
            +S  G     +D
Sbjct: 175 GVSLMGVQMPNLD 187


>gi|47078224 AT rich interactive domain 5A [Homo sapiens]
          Length = 594

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 72/277 (25%), Positives = 105/277 (37%), Gaps = 52/277 (18%)

Query: 46  GNVGAEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFK 105
           GN     E DA +     + AG +         G Q P S    P      E   EEQ +
Sbjct: 7   GNRKQSTEGDALDPPASPKPAGKQN--------GIQNPISLEDSPEAGGERE---EEQER 55

Query: 106 QLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVIN 165
           +        + + FL  L+ FM++R TP+ RVP +  + ++L+ +++ V   G    V  
Sbjct: 56  E--------EEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTG 107

Query: 166 RKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPY-------ECETRALSSPGELQAAID 218
           R++W+ V   L      TSAA   R  Y + + PY       + +    S P +      
Sbjct: 108 RRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPLPTSKPRKQYKMAK 167

Query: 219 SNR------------REGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQS-SPGP 265
            NR            +E RR          + G     A DPA  P   PP   +   G 
Sbjct: 168 ENRGDDGATERPKKAKEERRMDQM------MPGKTKADAADPAPLPSQEPPRNSTEQQGL 221

Query: 266 AQGST------SGLPAHACAQLSPSPIKKEESGIPNP 296
           A GS+      SG P  A  +L  S   K   GI +P
Sbjct: 222 ASGSSVSFVGASGCP-EAYKRLLSSFYCKGTHGIMSP 257


>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
           sapiens]
          Length = 1560

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 32/115 (27%), Positives = 64/115 (55%), Gaps = 4/115 (3%)

Query: 89  QPP-GLHPHEWTYEEQFKQLYELDADPKRK-EFLDDLFSFMQKRGTPVNRVPIMAKQVLD 146
           QPP  +    + +  + ++L EL+A  + K  +LD +  F + +G+ + ++P + +++LD
Sbjct: 53  QPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERRILD 111

Query: 147 LYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           LY+L ++V  +GG   +   + W  V + L+ P    +    LR+ Y + +YPYE
Sbjct: 112 LYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLRSHYERIVYPYE 165


>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
           sapiens]
          Length = 1539

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 89  QPP-GLHPHEWTYEEQFKQLYELDADPKRK-EFLDDLFSFMQKRGTPVNRVPIMAKQVLD 146
           QPP  +    + +  + ++L EL+A  + K  +LD +  F + +G+ + ++P + +++LD
Sbjct: 53  QPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILD 111

Query: 147 LYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           LY+L ++V  +GG   +   + W  V + L  P    +    LR+ Y + +YPYE
Sbjct: 112 LYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPG-KNIGSLLRSHYERIIYPYE 165


>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
           sapiens]
          Length = 1570

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 32/115 (27%), Positives = 63/115 (54%), Gaps = 4/115 (3%)

Query: 89  QPP-GLHPHEWTYEEQFKQLYELDADPKRK-EFLDDLFSFMQKRGTPVNRVPIMAKQVLD 146
           QPP  +    + +  + ++L EL+A  + K  +LD +  F + +G+ + ++P + +++LD
Sbjct: 53  QPPFAVEVDNFRFTPRVQRLNELEAQTRVKLNYLDQIAKFWEIQGSSL-KIPNVERKILD 111

Query: 147 LYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
           LY+L ++V  +GG   +   + W  V + L  P    +    LR+ Y + +YPYE
Sbjct: 112 LYSLSKIVIEEGGYEAICKDRRWARVAQRLHYPPG-KNIGSLLRSHYERIIYPYE 165


>gi|74136549 AT rich interactive domain 5B (MRF1-like) [Homo
           sapiens]
          Length = 1188

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 28/101 (27%), Positives = 50/101 (49%)

Query: 101 EEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGL 160
           EE+ K     +     + FL  L+ +M++R TP+ R+P +  + ++L+ +F+     GG 
Sbjct: 306 EEKPKVAIGEECRADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 365

Query: 161 VEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYE 201
             +  R+ W+ +   L      TSAA   R  Y + + PYE
Sbjct: 366 ETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 406


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 68/244 (27%), Positives = 90/244 (36%), Gaps = 55/244 (22%)

Query: 176 LSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPG---ELQAAIDSNRREGRRQAYTAT 232
           L  P + T  A   +     +L P E   + LS+ G    + A++  +     +    AT
Sbjct: 679 LGQPPSATPTAILTQDSLQMFL-PQERSQQPLSAEGPHLSVPASVIVSAPPPAQDPAPAT 737

Query: 233 PLFGLAGPPPRGAQDPALGPGPAP--PATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEE 290
           P+   AG  P+ A D    P PAP  PA     GP   S+  LP    A L  SP     
Sbjct: 738 PVAKGAGLGPQ-APDSQASPAPAPQIPAAAPLKGPGPSSSPSLPHQ--APLGDSP----- 789

Query: 291 SGIPNPCLALPVGLALGPTREKLAPEEPPEK-RAVLMGPMDPP-RPCMPPSFLPRGKVPL 348
             +P+P           PTR    P  PP + ++V   P +PP  PC PP   P   +P 
Sbjct: 790 -HLPSP----------HPTR---PPSRPPSRPQSVSRPPSEPPLHPCPPPQAPP--TLP- 832

Query: 349 REERLDGPLNLAGSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPS 408
                         GI  I   L        GV      P P + GP  P   P + PP 
Sbjct: 833 --------------GIFVIQNQL--------GVPPPASNPAPTAPGPPQPPLRPQSQPPE 870

Query: 409 SILP 412
             LP
Sbjct: 871 GPLP 874



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 26/87 (29%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 13  AQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEEEDAEEDEEKREEAGAEEEA 72
           A    P AP     PPQPPL      Q PEG L                   E  +   A
Sbjct: 847 ASNPAPTAPG----PPQPPLRPQS--QPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPA 900

Query: 73  AEESR-----PGAQGPSSPSSQPPGLH 94
              S      P +QGP    + PP LH
Sbjct: 901 PTPSDFQLQFPPSQGPHKSPTPPPTLH 927


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 54/177 (30%), Positives = 68/177 (38%), Gaps = 25/177 (14%)

Query: 239 GPPPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCL 298
           GP P G   P  GPGP P A +    PA G    LPA   A+ +  P       +P P  
Sbjct: 14  GPLPPGGAGPGPGPGPGPGAGKPPSAPAGGGQ--LPAAGAARSTAVP------PVPGPGP 65

Query: 299 ALPVGLALGPTREKLAPEEP-PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPL 357
               G   G T  +L P+EP   +RA        P P    +  P  + P RE R  GP 
Sbjct: 66  GPGPGPGPGSTSRRLDPKEPLGNQRAA------SPTPKQASATTPGHESP-RETRAQGP- 117

Query: 358 NLAGSGISSINMALEINGVVYTGVLFARRQPVPASQG--PTNPAPPPSTGP-PSSIL 411
             AG         L+++          R   V   +G  PT+P   P   P PSS L
Sbjct: 118 --AGQEADGPRRTLQVDSRTQRS---GRSPSVSPDRGSTPTSPYSVPQIAPLPSSTL 169



 Score = 37.4 bits (85), Expect = 0.025
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 28/175 (16%)

Query: 242 PRGAQDPALGPGPA---PPATQSSPGPAQGSTSGLPAHAC-AQLSPSPIKKEESGIPNPC 297
           P+G   P+ GP PA   P +T++SP P++ S    P  A     +PS ++++++ +P   
Sbjct: 558 PQGLGQPS-GPLPAKASPLSTKASPLPSKASPQAKPLRASEPSKTPSSVQEKKTRVPTKA 616

Query: 298 LALPVGLALGPTREKLAPEEPPEKRAVLMG-PMDPPRPCMPPSFLPRG-------KVPLR 349
             +P      P      P  P  K  V    P  P    +P +  P+G         P  
Sbjct: 617 EPMP----KPPPETTPTPATPKVKSGVRRAEPATPVVKAVPEA--PKGGEAEDLVGKPYS 670

Query: 350 EERLDGPLNLAGSGISSINMA---LEINGVVYTGVLFARRQPVPASQGPTNPAPP 401
           ++    P +L+ +G SS  ++    EI GVV   V          S G T P PP
Sbjct: 671 QDASRSPQSLSDTGYSSDGISSSQSEITGVVQQEV------EQLDSAGVTGPHPP 719



 Score = 32.3 bits (72), Expect = 0.80
 Identities = 31/110 (28%), Positives = 36/110 (32%), Gaps = 23/110 (20%)

Query: 242  PRGAQDPALGPGPA--------PPATQSSPGPAQGSTSGLPAH-----------ACAQLS 282
            P  A  PA   GP         PPA Q S G    + +G PAH                 
Sbjct: 3036 PATAAAPATPSGPTAFQQPRFQPPAPQYSAGSGGPTQNGFPAHQAPTYPGPSTYPAPAFP 3095

Query: 283  PSPIKKEESGIPNPCLALPVGLALG----PTREKLAPEEPPEKRAVLMGP 328
            P      E G+PN     P G   G    PT +      P + RA L  P
Sbjct: 3096 PGASYPAEPGLPNQQAFRPTGHYAGQTPMPTTQSTLFPVPADSRAPLQKP 3145



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 51/180 (28%), Positives = 68/180 (37%), Gaps = 33/180 (18%)

Query: 231  ATPLFGLAGPPPRGAQDPALGPG---PAPPATQSSPGPAQGSTSGLPAHACAQLSP---- 283
            AT  F    P P  A D    PG   P+P   Q +  P + ST  L     +Q +P    
Sbjct: 1500 ATAEFSTQTPSPAPASDMPRSPGAPTPSPMVAQGTQTPHRPSTPRLVWQESSQEAPFMVI 1559

Query: 284  -------SPIKKEESGIPNPCLALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCM 336
                   S  +   +      L  P      PT    +   PP    +      PP P  
Sbjct: 1560 TLASDASSQTRMVHASASTSPLCSPT--ETQPTTHGYSQTTPPSVSQL------PPEPPG 1611

Query: 337  PPSFLPRGKVPLREERLDGPLNLAGSG-ISSINMAL-EINGVVYTGVLFARRQPVPASQG 394
            PP F PR  VP      DGPL L G G + + N++L  I+ V  T    +R +P P + G
Sbjct: 1612 PPGF-PR--VP--SAGADGPLALYGWGALPAENISLCRISSVPGT----SRVEPGPRTPG 1662



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 2    EALQKQQAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAP---EGALGNVGAEEEEDAEE 58
            E L     A + +  G  APA PL   +PP        AP    GAL   G E+EE ++E
Sbjct: 2309 EPLPTTTPAAIKEAAGAPAPA-PLAGQKPPAD-----AAPGGGSGALSRPGFEKEEASQE 2362

Query: 59   DEEKREE 65
            + +++++
Sbjct: 2363 ERQRKQQ 2369



 Score = 28.9 bits (63), Expect = 8.9
 Identities = 35/127 (27%), Positives = 42/127 (33%), Gaps = 26/127 (20%)

Query: 242  PRGAQDPALGPG----PAPPATQSSPGPAQ------GSTSGLP--------AHACAQLSP 283
            PRG   PA   G    P+P +T  S G +         T  LP        A   A+  P
Sbjct: 1394 PRGYMTPASPAGSERSPSPSSTAHSYGHSPTTANYGSQTEDLPQAPSGLAAAGRAAREKP 1453

Query: 284  SPIKKEESGIPNPCLALPVGLALGPTREKLAPEEPPEKRAVLMGP-------MDPPRPCM 336
                  E G P P  A     +  P     +P E P      MGP          P P  
Sbjct: 1454 LSASDGEGGTPQPSRAYSYFASSSPPLSPSSPSESPTFSPGKMGPRATAEFSTQTPSPA- 1512

Query: 337  PPSFLPR 343
            P S +PR
Sbjct: 1513 PASDMPR 1519


>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform A [Homo sapiens]
          Length = 1679

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1597 EKEDDSEGEESEEEEEGEEEGSESESR 1623


>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform F [Homo sapiens]
          Length = 1613

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1531 EKEDDSEGEESEEEEEGEEEGSESESR 1557


>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform E [Homo sapiens]
          Length = 1614

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1532 EKEDDSEGEESEEEEEGEEEGSESESR 1558


>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform D [Homo sapiens]
          Length = 1616

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1534 EKEDDSEGEESEEEEEGEEEGSESESR 1560


>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform C [Homo sapiens]
          Length = 1617

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1535 EKEDDSEGEESEEEEEGEEEGSESESR 1561


>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1565 EKEDDSEGEESEEEEEGEEEGSESESR 1591


>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a4 isoform B [Homo sapiens]
          Length = 1647

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 47/159 (29%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 189 LRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAT---PLFGLAGPPPRGA 245
           LR Q M Y    +   R    P  LQ A+   R     Q    T   P     GP P   
Sbjct: 180 LRAQIMAY----KMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPG 235

Query: 246 QDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLA 305
             P  GPGPAPP   S P    G    +P    + + P    +   G P P    P+  A
Sbjct: 236 PGPGPGPGPAPP-NYSRPHGMGG--PNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANA 292

Query: 306 LGPTR--EKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLP 342
             PT   +KL P +P        G   P  P +PP+  P
Sbjct: 293 AAPTSTPQKLIPPQP-------TGRPSPAPPAVPPAASP 324



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 240 PPPRGAQDPALGPGPAPPATQSSPGPAQGSTSG-LPAHACAQLSPSPIKKEESGIPNPCL 298
           PP  G   P   PGP P     SPG   G + G  P  A + + PSP      G P+   
Sbjct: 6   PPLGGTPRPGPSPGPGP-----SPGAMLGPSPGPSPGSAHSMMGPSP------GPPSAGH 54

Query: 299 ALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPR 333
            +P     G  ++ +     P +     G  D PR
Sbjct: 55  PIPTQGPGGYPQDNMHQMHKPMESMHEKGMSDDPR 89



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 37/158 (23%), Positives = 52/158 (32%), Gaps = 16/158 (10%)

Query: 212 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS 271
           +L+A I + +   R Q         + G  P       +   P P  + + PGP  G   
Sbjct: 179 QLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGP 238

Query: 272 GL-PAHACAQLS-------PSPIKKEESGIPNPCLALPVG-----LALGPTREKLAPEEP 318
           G  P  A    S       P+      SG+P      P G        GP     AP   
Sbjct: 239 GPGPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTST 298

Query: 319 PEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGP 356
           P+K   L+ P    RP   P  +P    P+   +   P
Sbjct: 299 PQK---LIPPQPTGRPSPAPPAVPPAASPVMPPQTQSP 333



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 51   EEEEDAEEDEEKREEAGAEEEAAEESR 77
            E+E+D+E +E + EE G EE +  ESR
Sbjct: 1565 EKEDDSEGEESEEEEEGEEEGSESESR 1591


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,556,090
Number of Sequences: 37866
Number of extensions: 1499125
Number of successful extensions: 26168
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 1096
Number of HSP's that attempted gapping in prelim test: 14611
Number of HSP's gapped (non-prelim): 9265
length of query: 412
length of database: 18,247,518
effective HSP length: 105
effective length of query: 307
effective length of database: 14,271,588
effective search space: 4381377516
effective search space used: 4381377516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.