Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 61966701
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
(398 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 818 0.0
gi|47078281 hypothetical protein LOC9679 [Homo sapiens] 143 3e-34
gi|208431810 hypothetical protein LOC51307 [Homo sapiens] 130 2e-30
gi|7706139 hypothetical protein LOC51307 [Homo sapiens] 130 2e-30
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 44 3e-04
gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo ... 42 7e-04
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ... 42 7e-04
gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo ... 42 7e-04
gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa... 42 0.001
gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s... 42 0.001
gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s... 42 0.001
gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s... 42 0.001
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 42 0.001
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 41 0.002
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 41 0.002
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 40 0.004
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 40 0.004
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 40 0.004
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 40 0.005
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 40 0.005
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 39 0.006
gi|19924099 synapsin I isoform Ia [Homo sapiens] 39 0.006
gi|19924097 synapsin I isoform Ib [Homo sapiens] 39 0.006
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 39 0.008
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 39 0.011
gi|167736355 mucin 4 isoform a [Homo sapiens] 39 0.011
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 39 0.011
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.014
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.018
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 818 bits (2114), Expect = 0.0
Identities = 398/398 (100%), Positives = 398/398 (100%)
Query: 1 MVTLITEKLQSQSLDDLTCKAEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVR 60
MVTLITEKLQSQSLDDLTCKAEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVR
Sbjct: 1 MVTLITEKLQSQSLDDLTCKAEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVR 60
Query: 61 SQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRH 120
SQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRH
Sbjct: 61 SQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRH 120
Query: 121 CRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPT 180
CRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPT
Sbjct: 121 CRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPT 180
Query: 181 SPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERLAGAGTPLPWAS 240
SPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERLAGAGTPLPWAS
Sbjct: 181 SPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERLAGAGTPLPWAS 240
Query: 241 SSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQTLKNSK 300
SSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQTLKNSK
Sbjct: 241 SSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQTLKNSK 300
Query: 301 SLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMPGCSQRGLRTSPVHPNLWASRESVT 360
SLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMPGCSQRGLRTSPVHPNLWASRESVT
Sbjct: 301 SLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMPGCSQRGLRTSPVHPNLWASRESVT 360
Query: 361 SDGSRRSSGDPRDGDSVGEEGVFPRARWELDLEQIENN 398
SDGSRRSSGDPRDGDSVGEEGVFPRARWELDLEQIENN
Sbjct: 361 SDGSRRSSGDPRDGDSVGEEGVFPRARWELDLEQIENN 398
>gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
Length = 422
Score = 143 bits (360), Expect = 3e-34
Identities = 100/326 (30%), Positives = 155/326 (47%), Gaps = 22/326 (6%)
Query: 1 MVTLITEKLQSQSLDDLTCKAEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVR 60
MV +++E L ++ D + C + L ++ + +++ LF + + W+ P++
Sbjct: 1 MVMVLSESLSTRGADSIACGTFSREL-HTPKKMSQGPTLFSCGIMENDRWRDLDRKCPLQ 59
Query: 61 SQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRH 120
+ + LP ++ W ++ A + S+ G+ +APP+KR
Sbjct: 60 IDQPSTSIWECLPEKDSSL------WHREAVTACAVTSLIKDLSISDHNGNPSAPPSKRQ 113
Query: 121 CRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPT 180
CRSLS +E+ CR+ WRP SKVWTPV KRRC SGGS R + + + RS+ +S
Sbjct: 114 CRSLSFSDEMSSCRTSWRPLGSKVWTPVEKRRCYSGGSVQRYSNGFSTMQRSSSFSLPSR 173
Query: 181 SPATPRPSSASGGF----VDSSEGSAGSGPLWCSAESCLP----------STRRRPSLSQ 226
+ P +G +G GS P + ++ P +R S S
Sbjct: 174 ANVLSSPCDQAGLHHRFGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGRLDLQRSLSCSH 233
Query: 227 ERLAGAGTPLPWASSSPTSTPALGGR-RGLLRCRSQPCVLSGKRSRRKRRREEDARWTRP 285
E+ + P A+S+P STP L R GL R RSQPCVL+ K+ KRRR E+ + RP
Sbjct: 234 EQFSFVEYCPPSANSTPASTPELARRSSGLSRSRSQPCVLNDKKVGVKRRRPEEVQEQRP 293
Query: 286 SLDFLKMTQTLKNSKSLCSLNYEDDD 311
SLD KM Q + SL L+ +D
Sbjct: 294 SLDLAKMAQNCQTFSSLSCLSAGTED 319
>gi|208431810 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 130 bits (327), Expect = 2e-30
Identities = 140/425 (32%), Positives = 182/425 (42%), Gaps = 60/425 (14%)
Query: 1 MVTLITEKLQSQSLDDLTCK--AEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPP 58
M+TLITE+LQ Q+LD+L C + + PL A+ N G F L +++ + W+ G P
Sbjct: 1 MITLITEQLQKQTLDELKCTRFSISLPLPDHADISN-CGNSFQL-VSEGASWR----GLP 54
Query: 59 VRSQAATGPDFSFLPGLSAAAHTMGLQWQPQSP--------RPGAGLGAASTVDPSESTG 110
S A F L+ + H GL + P +P + + DP E
Sbjct: 55 HCSCA------EFQDSLNFSYHPSGLSLHLRPPSRGNSPKEQPFSQVLRPEPPDP-EKLP 107
Query: 111 SSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGG--SATRQGSPGAV 168
APP+KRHCRSLS P +L R + WRP SK+WTP+ R GG Q P V
Sbjct: 108 VPPAPPSKRHCRSLSVPVDLSRWQPVWRPAPSKLWTPIKHRGSGGGGGPQVPHQSPPKRV 167
Query: 169 LPRSAVWSTGPTSPATPRPSSASGGFV------DSSE---GSAGSGPLWCSAESCLP-ST 218
+ + +S P S F DSS S SG AES P
Sbjct: 168 SSLRFLQAPSASSQCAPAHRPYSPPFFSLALAQDSSRPCAASPQSGSWESDAESLSPCPP 227
Query: 219 RRRPSLSQERLAGAGTPLPWASSSPTSTPAL----GGRRGLLRCRSQPCVLSGKRSRRKR 274
+RR SLS A LP A SSP S+P L G R L R RSQPC L +++ KR
Sbjct: 228 QRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPRGLRNLPRSRSQPCDLDARKTGVKR 287
Query: 275 RREEDARWTRPSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGIT 334
R EED R RPSLDF KM Q S LC + +P + SP P ++
Sbjct: 288 RHEEDPRRLRPSLDFDKMNQK-PYSGGLCLQETAREGSSISPPWFMACSP------PPLS 340
Query: 335 MPGCSQRGLRTSPVHPNLWASRESVTSDGSRRSSGDPRDG-DSVGEEGVFPRARWELDLE 393
CS G V S+ G R G ++ + + R +LDL
Sbjct: 341 -ASCSPTG------------GSSQVLSESEEEEEGAVRWGRQALSKRTLCQRDFGDLDLN 387
Query: 394 QIENN 398
IE N
Sbjct: 388 LIEEN 392
>gi|7706139 hypothetical protein LOC51307 [Homo sapiens]
Length = 392
Score = 130 bits (327), Expect = 2e-30
Identities = 140/425 (32%), Positives = 182/425 (42%), Gaps = 60/425 (14%)
Query: 1 MVTLITEKLQSQSLDDLTCK--AEAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPP 58
M+TLITE+LQ Q+LD+L C + + PL A+ N G F L +++ + W+ G P
Sbjct: 1 MITLITEQLQKQTLDELKCTRFSISLPLPDHADISN-CGNSFQL-VSEGASWR----GLP 54
Query: 59 VRSQAATGPDFSFLPGLSAAAHTMGLQWQPQSP--------RPGAGLGAASTVDPSESTG 110
S A F L+ + H GL + P +P + + DP E
Sbjct: 55 HCSCA------EFQDSLNFSYHPSGLSLHLRPPSRGNSPKEQPFSQVLRPEPPDP-EKLP 107
Query: 111 SSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGG--SATRQGSPGAV 168
APP+KRHCRSLS P +L R + WRP SK+WTP+ R GG Q P V
Sbjct: 108 VPPAPPSKRHCRSLSVPVDLSRWQPVWRPAPSKLWTPIKHRGSGGGGGPQVPHQSPPKRV 167
Query: 169 LPRSAVWSTGPTSPATPRPSSASGGFV------DSSE---GSAGSGPLWCSAESCLP-ST 218
+ + +S P S F DSS S SG AES P
Sbjct: 168 SSLRFLQAPSASSQCAPAHRPYSPPFFSLALAQDSSRPCAASPQSGSWESDAESLSPCPP 227
Query: 219 RRRPSLSQERLAGAGTPLPWASSSPTSTPAL----GGRRGLLRCRSQPCVLSGKRSRRKR 274
+RR SLS A LP A SSP S+P L G R L R RSQPC L +++ KR
Sbjct: 228 QRRFSLSPSLGPQASRFLPSARSSPASSPELPWRPRGLRNLPRSRSQPCDLDARKTGVKR 287
Query: 275 RREEDARWTRPSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGIT 334
R EED R RPSLDF KM Q S LC + +P + SP P ++
Sbjct: 288 RHEEDPRRLRPSLDFDKMNQK-PYSGGLCLQETAREGSSISPPWFMACSP------PPLS 340
Query: 335 MPGCSQRGLRTSPVHPNLWASRESVTSDGSRRSSGDPRDG-DSVGEEGVFPRARWELDLE 393
CS G V S+ G R G ++ + + R +LDL
Sbjct: 341 -ASCSPTG------------GSSQVLSESEEEEEGAVRWGRQALSKRTLCQRDFGDLDLN 387
Query: 394 QIENN 398
IE N
Sbjct: 388 LIEEN 392
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 43.5 bits (101), Expect = 3e-04
Identities = 62/220 (28%), Positives = 84/220 (38%), Gaps = 35/220 (15%)
Query: 49 PWKVF----SGGPPVRSQAATGPDFSF-LPGLSAAAHTMGL-QWQPQSPRPGAGLGAAST 102
PW+ S P +R TG + LP GL + P + + G LGA +T
Sbjct: 908 PWRTTRRPGSSSPAIRRLPDTGSKDGYKLPWTWDTPSGRGLAEGTPTAGKLGPTLGAGTT 967
Query: 103 VDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQ 162
P +PPT R P + R P RP +++ P S G +
Sbjct: 968 RSPG-------SPPTLRVHGDTGSPRKPWPERRPPRPAATRTAPPTP-----SPGPSASP 1015
Query: 163 GSPGAVL---------PRSAVWSTGP-----TSPATPRPSSASG-GFVDSSEGSAGSGP- 206
G PG L P SA+ S TSP TP P+S + + +S A S P
Sbjct: 1016 GPPGPALTSDSSRELTPHSALTSEATSDAPDTSPPTPDPASRTNPDLILTSPDFALSTPD 1075
Query: 207 -LWCSAESCLPSTRRRPSLSQERLAGAGTPLPWASSSPTS 245
A + PS P+L +E + TP S SPTS
Sbjct: 1076 SSVVPALTPEPSPTPLPTLPKELTSDPSTPSEVTSLSPTS 1115
>gi|239757081 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 42.4 bits (98), Expect = 7e-04
Identities = 63/220 (28%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 61 SQAATGPDFSFLP-GLSAAAHTMGLQWQPQSPRPGAGLGAAST----VDPSESTGSSTA- 114
SQ TGP+ S P LS AA SPRP G G + T ++ T +A
Sbjct: 233 SQHPTGPEPSSRPHALSTAA----------SPRPCWGAGHSQTWRQGAGEAQGTRGGSAD 282
Query: 115 --PPTKRHCRSLSEPEELVRCRSP-------WRPGSSKVWTPVSKRR---CDSGGSATRQ 162
P + RS V + P PG+S +P++ RR C G+ T Q
Sbjct: 283 GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQ 342
Query: 163 GSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSA-GSGPLWCSAESCLPSTRRR 221
G PG + + G SP R S + S GS+ G G LW + C P +
Sbjct: 343 GPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQC-PCVAQG 401
Query: 222 PSLSQERLAGAGTPLPWASSSPTST-----PALGGRRGLL 256
P G G P ++ PT + P G R LL
Sbjct: 402 PH-------GGGKPSQALAAGPTVSMCGMRPLQGWSRSLL 434
>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 42.4 bits (98), Expect = 7e-04
Identities = 63/220 (28%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 61 SQAATGPDFSFLP-GLSAAAHTMGLQWQPQSPRPGAGLGAAST----VDPSESTGSSTA- 114
SQ TGP+ S P LS AA SPRP G G + T ++ T +A
Sbjct: 233 SQHPTGPEPSSRPHALSTAA----------SPRPCWGAGHSQTWRQGAGEAQGTRGGSAD 282
Query: 115 --PPTKRHCRSLSEPEELVRCRSP-------WRPGSSKVWTPVSKRR---CDSGGSATRQ 162
P + RS V + P PG+S +P++ RR C G+ T Q
Sbjct: 283 GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQ 342
Query: 163 GSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSA-GSGPLWCSAESCLPSTRRR 221
G PG + + G SP R S + S GS+ G G LW + C P +
Sbjct: 343 GPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQC-PCVAQG 401
Query: 222 PSLSQERLAGAGTPLPWASSSPTST-----PALGGRRGLL 256
P G G P ++ PT + P G R LL
Sbjct: 402 PH-------GGGKPSQALAAGPTVSMCGMRPLQGWSRSLL 434
>gi|169212748 PREDICTED: hypothetical protein LOC100127987 [Homo
sapiens]
Length = 755
Score = 42.4 bits (98), Expect = 7e-04
Identities = 63/220 (28%), Positives = 84/220 (38%), Gaps = 42/220 (19%)
Query: 61 SQAATGPDFSFLP-GLSAAAHTMGLQWQPQSPRPGAGLGAAST----VDPSESTGSSTA- 114
SQ TGP+ S P LS AA SPRP G G + T ++ T +A
Sbjct: 233 SQHPTGPEPSSRPHALSTAA----------SPRPCWGAGHSQTWRQGAGEAQGTRGGSAD 282
Query: 115 --PPTKRHCRSLSEPEELVRCRSP-------WRPGSSKVWTPVSKRR---CDSGGSATRQ 162
P + RS V + P PG+S +P++ RR C G+ T Q
Sbjct: 283 GIPELTCYQRSKCGKCGTVPTQGPPGTNPQCAMPGASGTRSPIATRRRSKCGKCGTVTAQ 342
Query: 163 GSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSA-GSGPLWCSAESCLPSTRRR 221
G PG + + G SP R S + S GS+ G G LW + C P +
Sbjct: 343 GPPGTHAECAMPGAGGTHSPIAARGRYRSHPKGNCSPGSSPGFGELWPLGQQC-PCVAQG 401
Query: 222 PSLSQERLAGAGTPLPWASSSPTST-----PALGGRRGLL 256
P G G P ++ PT + P G R LL
Sbjct: 402 PH-------GGGKPSQALAAGPTVSMCGMRPLQGWSRSLL 434
>gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo
sapiens]
Length = 630
Score = 42.0 bits (97), Expect = 0.001
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 134 RSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASG- 192
R+PW+P S ++ + RR S SP LPRSA G + PATP + +G
Sbjct: 260 RTPWKPPPSDLYGDLKSRR----NSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGP 315
Query: 193 --------------GFVDSSEGSAGSGPLWCSAESCLPSTRRRPS---LSQERLAGAGTP 235
G DS G + P A + TRR S L +R AG G
Sbjct: 316 QLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSEALLVDRAAGGGAG 375
Query: 236 LPWASSSPT-STPALGGRRGLLRCRSQP 262
P A +P+ S P + +L R QP
Sbjct: 376 SPPAPLAPSASGPPVCKSSEVLYERPQP 403
>gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo
sapiens]
Length = 618
Score = 42.0 bits (97), Expect = 0.001
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 134 RSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASG- 192
R+PW+P S ++ + RR S SP LPRSA G + PATP + +G
Sbjct: 248 RTPWKPPPSDLYGDLKSRR----NSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGP 303
Query: 193 --------------GFVDSSEGSAGSGPLWCSAESCLPSTRRRPS---LSQERLAGAGTP 235
G DS G + P A + TRR S L +R AG G
Sbjct: 304 QLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSEALLVDRAAGGGAG 363
Query: 236 LPWASSSPT-STPALGGRRGLLRCRSQP 262
P A +P+ S P + +L R QP
Sbjct: 364 SPPAPLAPSASGPPVCKSSEVLYERPQP 391
>gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo
sapiens]
Length = 649
Score = 42.0 bits (97), Expect = 0.001
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 134 RSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASG- 192
R+PW+P S ++ + RR S SP LPRSA G + PATP + +G
Sbjct: 248 RTPWKPPPSDLYGDLKSRR----NSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGP 303
Query: 193 --------------GFVDSSEGSAGSGPLWCSAESCLPSTRRRPS---LSQERLAGAGTP 235
G DS G + P A + TRR S L +R AG G
Sbjct: 304 QLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSEALLVDRAAGGGAG 363
Query: 236 LPWASSSPT-STPALGGRRGLLRCRSQP 262
P A +P+ S P + +L R QP
Sbjct: 364 SPPAPLAPSASGPPVCKSSEVLYERPQP 391
>gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo
sapiens]
Length = 661
Score = 42.0 bits (97), Expect = 0.001
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 134 RSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASG- 192
R+PW+P S ++ + RR S SP LPRSA G + PATP + +G
Sbjct: 260 RTPWKPPPSDLYGDLKSRR----NSVASPTSPTRSLPRSASSFEGRSVPATPVLTRGAGP 315
Query: 193 --------------GFVDSSEGSAGSGPLWCSAESCLPSTRRRPS---LSQERLAGAGTP 235
G DS G + P A + TRR S L +R AG G
Sbjct: 316 QLCKPEGLHSRQWSGSQDSQMGFPRADPASDRASLFVARTRRSNSSEALLVDRAAGGGAG 375
Query: 236 LPWASSSPT-STPALGGRRGLLRCRSQP 262
P A +P+ S P + +L R QP
Sbjct: 376 SPPAPLAPSASGPPVCKSSEVLYERPQP 403
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 53/182 (29%)
Query: 134 RSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGA-----VLPRSAVW--STGPTSPATPR 186
R WR GS W S++ GG + + PGA VL RS+ S+ + A R
Sbjct: 12 RRKWR-GS---WRTRSRQEARPGGGSRARPGPGAGPGGEVLGRSSSTPASSKASRTAQMR 67
Query: 187 PSSASGGF---------VDSSEGSA----GSGPL------WCSAESCLPSTRRRPSLSQE 227
+++SG V S+G A G+GP WC A +RPS S E
Sbjct: 68 KATSSGSVPVLSVLWSSVSGSDGKAVRLNGAGPRPKRGGPWCGA--------KRPSQSAE 119
Query: 228 RLAGAGTP---------LPW----ASSSPTSTPALGGRRG--LLRCRSQPCVLSGKRSRR 272
R A + TP PW SSS A GGR G + R QP + +RR
Sbjct: 120 RSAASSTPPEKTCAPGMKPWCGERCSSSSRKPSAGGGRDGGVAVSGRDQPAARTMLAARR 179
Query: 273 KR 274
+R
Sbjct: 180 QR 181
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/182 (30%), Positives = 74/182 (40%), Gaps = 53/182 (29%)
Query: 134 RSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGA-----VLPRSAVW--STGPTSPATPR 186
R WR GS W S++ GG + + PGA VL RS+ S+ + A R
Sbjct: 12 RRKWR-GS---WRTRSRQEARPGGGSRARPGPGAGPGGEVLGRSSSTPASSKASRTAQMR 67
Query: 187 PSSASGGF---------VDSSEGSA----GSGPL------WCSAESCLPSTRRRPSLSQE 227
+++SG V S+G A G+GP WC A +RPS S E
Sbjct: 68 KATSSGSVPVLSVLWSSVSGSDGKAVRLNGAGPRPKRGGPWCGA--------KRPSQSAE 119
Query: 228 RLAGAGTP---------LPW----ASSSPTSTPALGGRRG--LLRCRSQPCVLSGKRSRR 272
R A + TP PW SSS A GGR G + R QP + +RR
Sbjct: 120 RSAASSTPPEKTCAPGMKPWCGERCSSSSRKPSAGGGRDGGVAVSGRDQPAARTMLAARR 179
Query: 273 KR 274
+R
Sbjct: 180 QR 181
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/196 (32%), Positives = 76/196 (38%), Gaps = 43/196 (21%)
Query: 104 DPSESTGSSTAPPTKRHCRSLSE---PEELVRCRSPW----RPGSSKVWTPVSKRRCDSG 156
DP + ++ PP R C + P R SP R GS TPVS R
Sbjct: 272 DPCRCSSTAHRPPQPRVCTFSPQRVSPTTSPRPASPVPGSERRGSRPEMTPVSLR----- 326
Query: 157 GSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLP 216
+T++G PR + P PR SG DSS SA SGPL ++
Sbjct: 327 --STKEGPETPPRPRDQL-------PPHPRSRRYSGDS-DSSASSAQSGPLGTRSDDTGT 376
Query: 217 STRR-RPSLSQERLAGAGTPLPWASSSPTSTPAL----------GGRRGLLRCR-SQPCV 264
RR RPS R GTP +SP PAL G RG R +Q V
Sbjct: 377 GPRRERPS----RRLTTGTP-----ASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSV 427
Query: 265 LSGKRSRRKRRREEDA 280
S R R + REE A
Sbjct: 428 PSPARRARSQSREEQA 443
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 41.2 bits (95), Expect = 0.002
Identities = 63/196 (32%), Positives = 76/196 (38%), Gaps = 43/196 (21%)
Query: 104 DPSESTGSSTAPPTKRHCRSLSE---PEELVRCRSPW----RPGSSKVWTPVSKRRCDSG 156
DP + ++ PP R C + P R SP R GS TPVS R
Sbjct: 272 DPCRCSSTAHRPPQPRVCTFSPQRVSPTTSPRPASPVPGSERRGSRPEMTPVSLR----- 326
Query: 157 GSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLP 216
+T++G PR + P PR SG DSS SA SGPL ++
Sbjct: 327 --STKEGPETPPRPRDQL-------PPHPRSRRYSGDS-DSSASSAQSGPLGTRSDDTGT 376
Query: 217 STRR-RPSLSQERLAGAGTPLPWASSSPTSTPAL----------GGRRGLLRCR-SQPCV 264
RR RPS R GTP +SP PAL G RG R +Q V
Sbjct: 377 GPRRERPS----RRLTTGTP-----ASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSV 427
Query: 265 LSGKRSRRKRRREEDA 280
S R R + REE A
Sbjct: 428 PSPARRARSQSREEQA 443
>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 40.0 bits (92), Expect = 0.004
Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 32/235 (13%)
Query: 106 SESTGSSTAPP-TKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGS 164
+ G + AP T +S+S P L RSP P S + S +
Sbjct: 12 THGAGGTKAPRGTLSRSQSVSPPPVLSPPRSPIYPLSDSETSACRYPSHSSSRVLLKDRH 71
Query: 165 PGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSL 224
P A P++ + TSP T +AS G++D S P C ++ S +
Sbjct: 72 PPAPSPQNPQDPSPDTSPPTCPFKTASFGYLDRS-------PSACKRDAQKESVQG---- 120
Query: 225 SQERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTR 284
+ + +AG LP A S+P PA G RG+L R +G R+ RE+ + W
Sbjct: 121 AAQDVAGVAACLPLAQSTPFPGPA-AGPRGVLLTR------TGTRAHSLGIREKISAW-- 171
Query: 285 PSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMPGCS 339
+ + S+C + + + + S C S G P + CS
Sbjct: 172 ------EGRREASPRMSMCG-----EKREGSGSEWAASEGCPSLGCPSVVPSPCS 215
>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 40.0 bits (92), Expect = 0.004
Identities = 57/235 (24%), Positives = 89/235 (37%), Gaps = 32/235 (13%)
Query: 106 SESTGSSTAPP-TKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGS 164
+ G + AP T +S+S P L RSP P S + S +
Sbjct: 12 THGAGGTKAPRGTLSRSQSVSPPPVLSPPRSPIYPLSDSETSACRYPSHSSSRVLLKDRH 71
Query: 165 PGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSL 224
P A P++ + TSP T +AS G++D S P C ++ S +
Sbjct: 72 PPAPSPQNPQDPSPDTSPPTCPFKTASFGYLDRS-------PSACKRDAQKESVQG---- 120
Query: 225 SQERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTR 284
+ + +AG LP A S+P PA G RG+L R +G R+ RE+ + W
Sbjct: 121 AAQDVAGVAACLPLAQSTPFPGPA-AGPRGVLLTR------TGTRAHSLGIREKISAW-- 171
Query: 285 PSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMPGCS 339
+ + S+C + + + + S C S G P + CS
Sbjct: 172 ------EGRREASPRMSMCG-----EKREGSGSEWAASEGCPSLGCPSVVPSPCS 215
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 40.0 bits (92), Expect = 0.004
Identities = 82/349 (23%), Positives = 119/349 (34%), Gaps = 59/349 (16%)
Query: 83 GLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSS 142
GLQ + P G A+ P + R R EPEE + ++
Sbjct: 85 GLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAAARAADAA 144
Query: 143 KVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASG--------GF 194
P S R G +GSPG P A + G + A+ + G
Sbjct: 145 CNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCCWECLQNN 204
Query: 195 VDSSEGSAGSGPLWCSAES----CLPSTRRRPSLSQERLAGA---GTPLPWASSSPTSTP 247
+ G G+ P +AE LP+ R + S+ER GA P+P + SP +T
Sbjct: 205 LAVLPGELGALPHSATAEEKPARALPAQDDRGA-SREREEGALAEPAPVPAVAHSPPATV 263
Query: 248 ALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQTLKNSKSLCSLNY 307
R S P +L G R R T SL + + Q + ++ + +
Sbjct: 264 EAATSRA-----SPPALLPGPAPRGDRPE----LLTPSSLHYSTLQQQQQRTREWVARHP 314
Query: 308 E-DDDEDDTPVKTVLSSPCDSRGLP---GITMPGCSQRGLRTS-----PVHPN----LWA 354
+ + D P++ P + LP G T P S PV P+ WA
Sbjct: 315 QVPEARDQGPIRAWSVLPDNFLQLPLEPGSTEPNSEPPDPCLSSHSLFPVVPDESWESWA 374
Query: 355 SRESVT---------------------SDGSRRSSGDPRDGDSVGEEGV 382
S+T SDGS SS P+D EEG+
Sbjct: 375 GNPSLTVFRSIRCQLSLQDLDDFVDQESDGSEESSSGPKDSPGASEEGL 423
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 39.7 bits (91), Expect = 0.005
Identities = 59/247 (23%), Positives = 87/247 (35%), Gaps = 46/247 (18%)
Query: 49 PWKVFSGGP---PVRSQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDP 105
P K S GP P R+ T P GL +A + + + L A + D
Sbjct: 105 PAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDT 164
Query: 106 SESTGSSTAPPTKRHCRS------LSEPEELVRCRSPWRPGSSKVWT----------PVS 149
S T + +P R R+ L P R R P V + P +
Sbjct: 165 SGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAA 224
Query: 150 KRRCDSGGSATRQGS---PGAVLPRSAVWSTGPTSPATPR-----------------PSS 189
+RR +GG R S + P S+ +GP++ TPR P
Sbjct: 225 RRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQ 284
Query: 190 ASGGFVDSSE--GSAGSGPLWCSAESCLPSTRRRPSL-----SQERLAGAGTPLPWASSS 242
+ D++ G S PL + S ++ P+L S TPLP A S
Sbjct: 285 VTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPS 344
Query: 243 PTSTPAL 249
P++ P+L
Sbjct: 345 PSAPPSL 351
Score = 29.3 bits (64), Expect = 6.5
Identities = 40/164 (24%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 73 PGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVR 132
P S + + L P P P + +++ P + SS+A T R E
Sbjct: 594 PDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGA 653
Query: 133 CRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVW--STGPTSP-------- 182
SP P + R + A R G+PGA LP W +TGP S
Sbjct: 654 AASPPPDAELAACHPAAWSRGPAPPLAFR-GAPGAPLP----WPPATGPGSADGLCTIYE 708
Query: 183 ------ATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRR 220
ATP P + G + G + A S P R
Sbjct: 709 TEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQAR 752
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 39.7 bits (91), Expect = 0.005
Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 13/115 (11%)
Query: 141 SSKVWTPVSKRRCDSGGSATRQG--SPGAVLPRSAVWSTGPTSPAT--PRPSSASGGFVD 196
+S W P C G R G +PG LP A GP PA RP A G +
Sbjct: 19 ASTTWVP-----CQICGPRERHGPRTPGGQLP-GARRGPGPRRPAPLPARPPGALGSVLR 72
Query: 197 SSEGSAGSGPLWCS-AESCLPSTRRRPSLSQERLAGAGTPLPWASSSPTSTPALG 250
G P A CLP RP+ R G PL W S P PA G
Sbjct: 73 PLRARPGCRPRRPHPAARCLPLRPHRPTRRHRR--PGGFPLAWGSPQPAPRPAPG 125
Score = 32.0 bits (71), Expect = 1.0
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 55 GGPPVRSQ-------AATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAAS-TVDPS 106
GG P R+ AA P + + + T L PQSPR GA LGA + VD
Sbjct: 179 GGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLGACTRPVDVR 238
Query: 107 ESTGSSTAPP 116
+S G PP
Sbjct: 239 DSGGRPLPPP 248
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 39.3 bits (90), Expect = 0.006
Identities = 50/198 (25%), Positives = 72/198 (36%), Gaps = 24/198 (12%)
Query: 47 QSPWKVFSGGPPVRSQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDP- 105
++P + G P R+ P + G + A G SP + G+ ST P
Sbjct: 432 RTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTG------SPSTASPTGSPSTASPT 485
Query: 106 -SESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGS 164
S S S T P++ + + R S +S WTP + S +A GS
Sbjct: 486 GSPSRASLTRTPSRASLTKMESTASITRTPSR----ASPTWTPSTASPTGSPSTALAMGS 541
Query: 165 PGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSL 224
P R+A+ T + T PS AS S S P S + TR PS
Sbjct: 542 PS----RAALTRTPSRASLTRTPSRAS--LTTPSRASLTRTP------STVLLTRMPPSA 589
Query: 225 SQERLAGAGTPLPWASSS 242
S + +P SS+
Sbjct: 590 SPTGMPSRTSPTGMPSSA 607
Score = 37.7 bits (86), Expect = 0.018
Identities = 52/187 (27%), Positives = 73/187 (39%), Gaps = 26/187 (13%)
Query: 87 QPQSPRP-GAGLGAASTVDPSES--TG-SSTAPPTKRHCRS--LSEPEELVRCRSPWRPG 140
+P + P G A+ T PS + TG SSTA PT R+ P R P R
Sbjct: 352 KPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRAS 411
Query: 141 SSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEG 200
+ + + S + DS S TR PR++ T P + T PS AS S+
Sbjct: 412 PTGMLSRTSITKMDSTASPTRTP------PRASPTGTPPRASPTGTPSRASPTGTQSTAS 465
Query: 201 SAGS-------------GPLWCSAESCLPSTRRRPSLSQERLAGAGTPLPWASSSPTSTP 247
GS P + + L T R SL++ + T P + +SPT TP
Sbjct: 466 PTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTP-SRASPTWTP 524
Query: 248 ALGGRRG 254
+ G
Sbjct: 525 STASPTG 531
Score = 32.3 bits (72), Expect = 0.77
Identities = 50/199 (25%), Positives = 75/199 (37%), Gaps = 24/199 (12%)
Query: 54 SGGPPVRSQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSST 113
+G PP S + P S LS T L P P G+ + +++ +ST S T
Sbjct: 221 TGTPPRASPTGSPPRAS----LSMMPSTALLIRTPPRASP-TGMLSRTSLTKMDSTASIT 275
Query: 114 APPTKRHCRS-LSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVL--- 169
P++ S P +P ++ S S S T+ S ++
Sbjct: 276 RTPSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTP 335
Query: 170 PRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERL 229
PR+++ T + T +PS+AS S GS PST LS
Sbjct: 336 PRASITRTPSRASPTGKPSTASPTGTPSRASPTGS-----------PSTASLTGLS-STA 383
Query: 230 AGAGTPLPWASSSPTSTPA 248
+ GTP +SPT TP+
Sbjct: 384 SPTGTP---PRASPTGTPS 399
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 39.3 bits (90), Expect = 0.006
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 157 GSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLP 216
GS + SPGA LP S P P + GG G GP P
Sbjct: 431 GSHGQTPSPGA-LPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGP---------P 480
Query: 217 STRRRPSLSQERLAG----AGTPLPWASSSPTSTP 247
+R P Q+ L+G AG+PLP SPTS P
Sbjct: 481 LQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAP 515
Score = 35.8 bits (81), Expect = 0.070
Identities = 35/116 (30%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 73 PGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVR 132
P AA T G Q + G G A+ S S PP S+S P
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKA 577
Query: 133 CRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPS 188
+P PG + P K +G TRQ S +PR TGP + PRPS
Sbjct: 578 SGAP--PGGQQRQGPPQKPPGPAG--PTRQASQAGPVPR-----TGPPTTQQPRPS 624
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 39.3 bits (90), Expect = 0.006
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 157 GSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLP 216
GS + SPGA LP S P P + GG G GP P
Sbjct: 431 GSHGQTPSPGA-LPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGP---------P 480
Query: 217 STRRRPSLSQERLAG----AGTPLPWASSSPTSTP 247
+R P Q+ L+G AG+PLP SPTS P
Sbjct: 481 LQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAP 515
Score = 36.6 bits (83), Expect = 0.041
Identities = 48/174 (27%), Positives = 59/174 (33%), Gaps = 30/174 (17%)
Query: 73 PGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVR 132
P AA T G Q + G G A+ S S PP S+S P
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKA 577
Query: 133 CRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASG 192
+P PG + P K +G TRQ S +PR TGP + PRPS
Sbjct: 578 SGAP--PGGQQRQGPPQKPPGPAG--PTRQASQAGPVPR-----TGPPTTQQPRPS---- 624
Query: 193 GFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLS---QERLAGAGTPLPWASSSP 243
G GP A P ++PS A G P P +SP
Sbjct: 625 ----------GPGP----AGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASP 664
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 38.9 bits (89), Expect = 0.008
Identities = 53/205 (25%), Positives = 79/205 (38%), Gaps = 34/205 (16%)
Query: 148 VSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPL 207
+ +RR + R G P P+ A + P PA P+SA+ G + A G
Sbjct: 1 MEQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPG-- 58
Query: 208 WCSAESCLPSTRRRPSLSQERLAGAGTP----LPWASSSP-----TSTPALGGRRGLLRC 258
+ P RRR LS + ++ TP +P A SP STPA G L
Sbjct: 59 ---RDQARPPARRRLRLSVDEVSSPSTPEAPDIP-ACPSPGQKIKKSTPAAGQPPHLTSA 114
Query: 259 RSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVK 318
+ Q +S S +R RE AR + + +++ C+ E E+ K
Sbjct: 115 QDQD-TISELASCLQRARELGAR-------VRALKASAQDAGESCTPEAEGRPEEPCGEK 166
Query: 319 T-------VLSSPCDSRGLPGITMP 336
L+ P GLPG+ +P
Sbjct: 167 APAYQRFHALAQP----GLPGLVLP 187
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 38.5 bits (88), Expect = 0.011
Identities = 61/247 (24%), Positives = 89/247 (36%), Gaps = 31/247 (12%)
Query: 23 AGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGPPVRSQAATGPDFSFLPGLSAAAHTM 82
AGP + S + G P N SP V S G R+ T P GL +A
Sbjct: 77 AGPTRTSRPPASGRGERAPPAKNT-SPGPVSSPG---RASGTTRPGPLGQKGLRISAEET 132
Query: 83 GLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRS------LSEPEELVRCRSP 136
+ + + L A + D S T + +P R R+ L P R R P
Sbjct: 133 VARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPP 192
Query: 137 WRPGSSKVWT----------PVSKRRCDSGGSATRQGS---PGAVLPRSAVWSTGPTSPA 183
V + P ++RR +GG R S + P S+ +GP++
Sbjct: 193 TEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARG 252
Query: 184 TPR-PSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERLAGAGTPLPWASSS 242
TPR P+ S +G P + P P+L + TP P A S
Sbjct: 253 TPRAPAHPSQ---PKPKGLQALRP----PQVTPPRKDAAPALGPLSSSPLATPSPSAPPS 305
Query: 243 PTSTPAL 249
P++ P+L
Sbjct: 306 PSAPPSL 312
Score = 29.3 bits (64), Expect = 6.5
Identities = 40/164 (24%), Positives = 55/164 (33%), Gaps = 21/164 (12%)
Query: 73 PGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVR 132
P S + + L P P P + +++ P + SS+A T R E
Sbjct: 555 PDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGA 614
Query: 133 CRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVW--STGPTSP-------- 182
SP P + R + A R G+PGA LP W +TGP S
Sbjct: 615 AASPPPDAELAACHPAAWSRGPAPPLAFR-GAPGAPLP----WPPATGPGSADGLCTIYE 669
Query: 183 ------ATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRR 220
ATP P + G + G + A S P R
Sbjct: 670 TEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQAR 713
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 38.5 bits (88), Expect = 0.011
Identities = 64/239 (26%), Positives = 99/239 (41%), Gaps = 30/239 (12%)
Query: 22 EAGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGP---PVRSQAATGPDFSFLPGLSAA 78
+A PL ++ + +G PL + D S P + S +TG D LP S +
Sbjct: 3677 QATPLPVTSLSSVSTGDTTPLPVTDASSASTGHATPLPVTIPSSVSTG-DTMPLPVTSPS 3735
Query: 79 AHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWR 138
+ + G +P P GL +AST D + + T+ + RH + P + S
Sbjct: 3736 SASTG----HATPLPVTGLSSASTGDTTPLPVTDTSSASTRH----ATPLPVTDTSSAST 3787
Query: 139 PGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSP-ATPRPSSASGGFVDS 197
++++ PV+ D ++T +P V S+ STG T+P SS S G S
Sbjct: 3788 DDTTRL--PVT----DVSSASTGHATPLPVTSTSSA-STGDTTPLPVTDTSSVSTGHATS 3840
Query: 198 ----SEGSAGSG---PLWCSAESCLPSTRRRP---SLSQERLAGAGTPLPWASSSPTST 246
S SA +G PL + S + + P + + G TPLP S S ST
Sbjct: 3841 LPVTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSAST 3899
Score = 35.4 bits (80), Expect = 0.091
Identities = 71/260 (27%), Positives = 97/260 (37%), Gaps = 42/260 (16%)
Query: 23 AGPLQYSAETLNKSGRLFPLELNDQSPWKVFSGGP-PVRS--QAATGPDFSFLPGLSAAA 79
A PL ++ + +G PL + D S P PV S A+TG D + LP ++
Sbjct: 1006 ATPLPVTSPSSVSTGHTTPLPVTDTSSESTGHVTPLPVTSFSSASTG-DSTPLPVTDTSS 1064
Query: 80 HTMGLQWQPQSPRPGAGLGAASTVD---------PSESTGSSTA-PPTKRHCRSLSEPEE 129
+ G +P P L +AST D S STG +T+ P T S
Sbjct: 1065 ASTG----HVTPLPVTSLSSASTGDTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHTTP 1120
Query: 130 LVRCRSPWRPGSSKVWTPVSKRR------------CDSGGSATRQGSPGAVLPRSAVWST 177
L + PV+ D+ ++T Q +P V S+V ST
Sbjct: 1121 LPVTDTSSASTGHATSLPVTDTSSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSV-ST 1179
Query: 178 GPTSP-ATPRPSSASGG------FVDSSEGSAGSGPLWCSAESCLPSTRRRPSL----SQ 226
G T+P PSSAS G D+S S G ++ ST SL
Sbjct: 1180 GDTTPLPVTSPSSASTGHATPLLVTDTSSASTGHATPLPVTDASSVSTDHATSLPVTIPS 1239
Query: 227 ERLAGAGTPLPWASSSPTST 246
G TPLP +S ST
Sbjct: 1240 AASTGHTTPLPVTDTSSAST 1259
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 38.5 bits (88), Expect = 0.011
Identities = 42/151 (27%), Positives = 55/151 (36%), Gaps = 20/151 (13%)
Query: 105 PSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGS 164
P G+ P H R P+ P G S P S+ R S++ QG
Sbjct: 1179 PDSWDGNREPGPGHEHFRDTPRPDH------PPHDGHS----PASRER-----SSSLQGM 1223
Query: 165 PGAVLP-RSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPS 223
A LP R W GP + + R A GG + G GP +P + R S
Sbjct: 1224 DMASLPPRKRPWHDGPGT-SEHREMEAPGGPSEDRGGKGRGGP---GPAQRVPKSGRSSS 1279
Query: 224 LSQERLAGAGTPLPWASSSPTSTPALGGRRG 254
L E G P+ + TP+ GGR G
Sbjct: 1280 LDGEHHDGYHRDEPFGGPPGSGTPSRGGRSG 1310
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.1 bits (87), Expect = 0.014
Identities = 76/313 (24%), Positives = 106/313 (33%), Gaps = 24/313 (7%)
Query: 92 RPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKR 151
R A G + + P+ S + P +R RS + R R+P R G S+ TP +R
Sbjct: 565 RSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRR 624
Query: 152 RCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEG-SAGSGPLWCS 210
S TR RS +G + TP S + G S P S
Sbjct: 625 ------SRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRS 678
Query: 211 --AESCLPSTR-RRPSLSQERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSG 267
+ S P+ R R S + R L S + TP GR G R S
Sbjct: 679 GRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQ 738
Query: 268 KRSR------RKRRREEDARWTRPSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVKTVL 321
+RSR K+ R R S K L +SL + + TP +
Sbjct: 739 RRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSR 798
Query: 322 SSPCDSRGLPGITMPGCSQRGLRTSPVHPNLWASRESVTSDGSR---RSSGDPRDGD--- 375
S + T P S+ P + SR+S +S +S PR G
Sbjct: 799 SGSSQPKA-KSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITS 857
Query: 376 -SVGEEGVFPRAR 387
E+ V P+ R
Sbjct: 858 PQANEQSVTPQRR 870
Score = 38.1 bits (87), Expect = 0.014
Identities = 54/196 (27%), Positives = 71/196 (36%), Gaps = 22/196 (11%)
Query: 95 AGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGS-SKVWTPVSKRRC 153
A L S S S PP R S+S PE + RS R S S T + RR
Sbjct: 1701 ARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRG 1760
Query: 154 DS----------GGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAG 203
S S +R+ R S+ TS R S S GS
Sbjct: 1761 RSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGY 1820
Query: 204 SGPLWCSAESCLPSTRRR------PSLSQERLAGAGTPLPWASSSPTSTPALGGRRGLLR 257
ES S+RRR P S++R +P PW S ++PA R
Sbjct: 1821 HSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATH-----RR 1875
Query: 258 CRSQPCVLSGKRSRRK 273
RS+ ++S +RSR +
Sbjct: 1876 SRSRTPLISRRRSRSR 1891
Score = 37.7 bits (86), Expect = 0.018
Identities = 58/197 (29%), Positives = 69/197 (35%), Gaps = 55/197 (27%)
Query: 110 GSSTAPPTKR-HCRSLSEPEELVRCRSPWRPG----------------SSKVWTPVSKRR 152
G S PPT R RS + P R RS P S +PVS+RR
Sbjct: 1840 GRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRR 1899
Query: 153 CDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAE 212
S S TR+ S P S S T P T R S
Sbjct: 1900 SRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS-----------------------R 1936
Query: 213 SCLPSTRRRPSLSQERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSR- 271
S P+TRRR S+ R TP S + TP + RR R R+ P RSR
Sbjct: 1937 SRTPTTRRR---SRSR-----TPPVTRRRSRSRTPPVTRRRS--RSRTSPITRRRSRSRT 1986
Query: 272 ----RKRRREEDARWTR 284
R+R R + TR
Sbjct: 1987 SPVTRRRSRSRTSPVTR 2003
Score = 35.4 bits (80), Expect = 0.091
Identities = 51/201 (25%), Positives = 65/201 (32%), Gaps = 22/201 (10%)
Query: 92 RPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKR 151
+P A S D S + + T P ++ RS S PE + R +S R
Sbjct: 1548 KPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSR-------------LSPR 1594
Query: 152 RCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSA 211
R SG S + P A PR+ S P P P A S S G GP +
Sbjct: 1595 RSRSGSSPEVKDKPRAA-PRAQSGSDSSPEPKAPAP-RALPRRSRSGSSSKGRGPSPEGS 1652
Query: 212 ESCLPSTRRRPSLSQERLAGAGTPLPWASS-------SPTSTPALGGRRGLLRCRSQPCV 264
S S P R +P P S S S+P L + L R
Sbjct: 1653 SSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASS 1712
Query: 265 LSGKRSRRKRRREEDARWTRP 285
RSR R + P
Sbjct: 1713 SPETRSRTPPRHRRSPSVSSP 1733
Score = 32.7 bits (73), Expect = 0.59
Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 25/157 (15%)
Query: 111 SSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLP 170
S T+P T+R RS + P R RS +PV++RR +R +P A+
Sbjct: 1984 SRTSPVTRRRSRSRTSPVTRRRSRSR--------TSPVTRRR-------SRSRTPPAIRR 2028
Query: 171 RSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCL----PSTRRR-PSLS 225
RS +P PR S S + S P + L P+ RRR S S
Sbjct: 2029 RSR-----SRTPLLPRKRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGS 2083
Query: 226 QERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQP 262
+ + TP + S + TP + + C S+P
Sbjct: 2084 SSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRP 2120
Score = 32.3 bits (72), Expect = 0.77
Identities = 63/263 (23%), Positives = 95/263 (36%), Gaps = 41/263 (15%)
Query: 68 DFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKR-HCRSLS- 125
+ S P +H + + S P +G + + ++ S + PTKR H RS S
Sbjct: 452 EISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSP 511
Query: 126 ---------------EPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLP 170
P+ R RSP RPG W S+ R +R G
Sbjct: 512 QWRRSRSAQRWGRSRSPQRRGRSRSPQRPG----W---SRSRNTQRRGRSRSARRGRSHS 564
Query: 171 RSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTR---------RR 221
RS + G + TP S + S P + S P+ R RR
Sbjct: 565 RSPA-TRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARR 623
Query: 222 PSLSQ---ERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREE 278
S ++ R + + +P + S + TPA RRG R R+ P RSR RR
Sbjct: 624 RSRTRSPVRRRSRSRSPARRSGRSRSRTPA---RRGRSRSRT-PARRGRSRSRTPARRSG 679
Query: 279 DARWTRPSLDFLKMTQTLKNSKS 301
+R P+ ++T + +S
Sbjct: 680 RSRSRTPARRGRSRSRTPRRGRS 702
Score = 31.2 bits (69), Expect = 1.7
Identities = 79/338 (23%), Positives = 112/338 (33%), Gaps = 48/338 (14%)
Query: 70 SFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRS---LSE 126
S +P SAAA + P P + A + P+ + + A P S L++
Sbjct: 2230 SRIPAASAAAMNLASARTPAIP---TAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLAD 2286
Query: 127 PEELVRCRSPWRPGSSKVW--TPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPAT 184
P R+P P + TP + GS T + A P S S P +PA+
Sbjct: 2287 P------RTPTAPAVNLAGARTPAALAALSLTGSGTPPTA--ANYPSS---SRTPQAPAS 2335
Query: 185 PRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERLAGAGTPL-PWASSSP 243
+ AGS A + L S R P+LS L PL + S
Sbjct: 2336 ANLVGPRSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSG 2395
Query: 244 TSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTR-PSLDFLKMTQTLKNS--- 299
++P L R R R+ P S R +R +R + PS L Q S
Sbjct: 2396 RTSPPLLDR---ARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVP 2452
Query: 300 -----KSLCSLNYE-----DDDEDDTPVKTVLSSPCDSRGLPGITMPGCSQRGLRTSPV- 348
+S C + V T SS D G+ + PG + P
Sbjct: 2453 SAFSDQSRCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPAS 2512
Query: 349 ----HPNLWAS------RESVTSDGSRRSSGDPRDGDS 376
P+ A+ R S +S S SS S
Sbjct: 2513 TGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSS 2550
Score = 30.4 bits (67), Expect = 2.9
Identities = 54/189 (28%), Positives = 68/189 (35%), Gaps = 31/189 (16%)
Query: 61 SQAATGPDFSFLPGLSAAAHTMGLQWQPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRH 120
+ +A+ D S SAAA T +SP P +G SE +ST P
Sbjct: 266 ADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRP---- 321
Query: 121 CRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPT 180
S PE + P P K K SATR P RS STGP
Sbjct: 322 ----SSPE--TATKQPSSPYEDKDKDKKEK-------SATR---PSPSPERS---STGPE 362
Query: 181 SPA-TPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQERLAGAGTPLPWA 239
PA TP + GG + S P+ R P S E+ LP +
Sbjct: 363 PPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEK-------LPQS 415
Query: 240 SSSPTSTPA 248
SSS +S P+
Sbjct: 416 SSSESSPPS 424
Score = 30.4 bits (67), Expect = 2.9
Identities = 48/203 (23%), Positives = 73/203 (35%), Gaps = 34/203 (16%)
Query: 87 QPQSPRPGAGLGAASTVDPSESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWT 146
QP R + ++S+ S S+ SS++ + S SE L P +P
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSL-----PVQP------- 2572
Query: 147 PVSKRRCDSGGSATRQGSPGAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGP 206
V+ +R S A P+ AV P P + S SS S+ S
Sbjct: 2573 EVALKRVPSPTPA----------PKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSS 2622
Query: 207 LWCSAESCLPSTRRRPSLSQERLAGAGTPLPWASSSPTSTPALGGRRGLLRCRSQPCVLS 266
S+ S S+ S S +SSS + +PA G + L + S
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSS------------SSSSSSPSPAKPGPQALPKPASPKKPPP 2670
Query: 267 GKRSRRKRRREEDARWTRPSLDF 289
G+R R R+ D+ SL +
Sbjct: 2671 GERRSRSPRKPIDSLRDSRSLSY 2693
Score = 29.6 bits (65), Expect = 5.0
Identities = 40/153 (26%), Positives = 55/153 (35%), Gaps = 26/153 (16%)
Query: 239 ASSSPTSTPALGGRRGLLRCRSQPCVLSGKRSRRKRRREEDARWTRPSLDFLKMTQTLKN 298
++++ T T AL GR P SG RR E DA ++ P + + +
Sbjct: 281 SAAAKTHTTALAGR--------SPSPASG------RRGEGDAPFSEPGTTSTQRPSSPET 326
Query: 299 SKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMP----------GCSQRGLRTSPV 348
+ S YED D+D SP R G P G S + L T+P+
Sbjct: 327 ATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPL 386
Query: 349 --HPNLWASRESVTSDGSRRSSGDPRDGDSVGE 379
P S S T D S S + S E
Sbjct: 387 SQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSE 419
Score = 29.3 bits (64), Expect = 6.5
Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 4/132 (3%)
Query: 106 SESTGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSP 165
S+ + S+T P T+ H S + P L R S TP+ RC S G GS
Sbjct: 2085 SDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLD--RCRSPGMLEPLGS- 2141
Query: 166 GAVLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLS 225
+ P S + G + P P E A S L + R PS+S
Sbjct: 2142 -SRTPMSVLQQAGGSMMDGPGPRIPDHQRTSVPENHAQSRIALALTAISLGTARPPPSMS 2200
Query: 226 QERLAGAGTPLP 237
LA + +P
Sbjct: 2201 AAGLAARMSQVP 2212
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.018
Identities = 67/283 (23%), Positives = 91/283 (32%), Gaps = 40/283 (14%)
Query: 108 STGSSTAPPTKRHCRSLSEPEELVRCRSPWRPGSSKVWTPVSKRRCDSGGSATRQGSPGA 167
S+GSS +P H P L S + D G Q S G+
Sbjct: 256 SSGSSHSPSLSSHYSDSRSPSRL------------------SPKHRDEGRKTGSQRSSGS 297
Query: 168 VLPRSAVWSTGPTSPATPRPSSASGGFVDSSEGSAGSGPLWCSAESCLPSTRRRPSLSQE 227
P S +G SP S G GSA S P S+ S P R + + +
Sbjct: 298 RSP-SPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPS--PRVRDKAAAAAP 354
Query: 228 RLAGAGTPLPWASSSPTSTP----ALGG-----RRGLLRCRSQPCVLSGKRSRRKRRREE 278
G P S+P+S A GG RR R RS+ + +R R+R R
Sbjct: 355 TPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPA 414
Query: 279 DARWTRPSLDFLKMTQTLKNSKSLCSLNYEDDDEDDTPVKTVLSSPCDSRGLPGITMPGC 338
R + SL + + + + E E + R P T P
Sbjct: 415 PPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSP 474
Query: 339 SQRGLRTSPV----------HPNLWASRESVTSDGSRRSSGDP 371
G R P HP W+S S + SR + P
Sbjct: 475 GAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRP 517
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,646,750
Number of Sequences: 37866
Number of extensions: 1142724
Number of successful extensions: 5582
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 438
Number of HSP's that attempted gapping in prelim test: 4926
Number of HSP's gapped (non-prelim): 1012
length of query: 398
length of database: 18,247,518
effective HSP length: 104
effective length of query: 294
effective length of database: 14,309,454
effective search space: 4206979476
effective search space used: 4206979476
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.