Guide to the Human Genome
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Name: C14orf39 Sequence: fasta or formatted (587aa) NCBI GI: 190610010
Description:

hypothetical protein LOC317761

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.9         17           1
 C cysteine            1.9         11           2
 D aspartate           5.5         32           2
 E glutamate          11.1         65           2
 F phenylalanine       6.0         35           2
 G glycine             2.9         17           1
 H histidine           2.6         15           1
 I isoleucine          5.6         33           1
 K lysine              8.9         52           2
 L leucine             6.5         38           3
 M methionine          1.7         10           1
 N asparagine          6.0         35           1
 P proline             4.1         24           2
 Q glutamine           5.8         34           2
 R arginine            4.3         25           1
 S serine             10.4         61           4
 T threonine           6.8         40           2
 V valine              3.9         23           1
 W tryptophan          0.5          3           1
 Y tyrosine            2.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC317761 
CCDC73                0.022   sarcoma antigen NY-SAR-79 
GOLGA4                0.020   golgi autoantigen, golgin subfamily a, 4 
CENPF                 0.018   centromere protein F 
CEP110                0.018   centrosomal protein 110kDa 
LEKR1                 0.017   leucine, glutamate and lysine rich 1 
MYH3                  0.017   myosin, heavy chain 3, skeletal muscle, embryonic [H...
GCC2                  0.016   GRIP and coiled-coil domain-containing 2 
SCAPER                0.016   S-phase cyclin A-associated protein in the ER isofo...
SCAPER                0.016   S-phase cyclin A-associated protein in the ER isofo...
CCDC88A               0.015   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.015   coiled-coil domain containing 88A isoform 1 
MYH15                 0.015   myosin, heavy polypeptide 15 
FKBP15                0.015   FK506 binding protein 15, 133kDa 
EEA1                  0.015   early endosome antigen 1, 162kD 
C14orf145             0.015   hypothetical protein LOC145508 
MYH13                 0.015   myosin, heavy polypeptide 13, skeletal muscle [Homo...
HOOK3                 0.015   golgi-associated microtubule-binding protein HOOK3 [...
NIN                   0.015   ninein isoform 4 
NIN                   0.015   ninein isoform 5 
NIN                   0.015   ninein isoform 1 
NIN                   0.015   ninein isoform 2 
CENPE                 0.014   centromere protein E 
FAM184A               0.014   hypothetical protein LOC79632 isoform 2 
FAM184A               0.014   hypothetical protein LOC79632 isoform 1 
ERC1                  0.013   RAB6-interacting protein 2 isoform epsilon 
LOC645202             0.013   PREDICTED: hypothetical protein LOC645202 
SMC1A                 0.013   structural maintenance of chromosomes 1A 
MYH1                  0.013   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CNTLN                 0.013   centlein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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