Guide to the Human Genome
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Name: APOL1 Sequence: fasta or formatted (398aa) NCBI GI: 211938440
Description:

apolipoprotein L1 isoform a precursor

Referenced in:

Lipoproteins

Other entries for this name:
alt prot [380aa] apolipoprotein L1 isoform c precursor
alt mRNA [398aa] apolipoprotein L1 isoform a precursor
alt prot [414aa] apolipoprotein L1 isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         36           3
 C cysteine            0.3          1           1
 D aspartate           4.8         19           1
 E glutamate           8.5         34           2
 F phenylalanine       2.8         11           2
 G glycine             7.3         29           2
 H histidine           1.5          6           1
 I isoleucine          4.8         19           1
 K lysine              6.3         25           2
 L leucine            12.6         50           5
 M methionine          2.3          9           1
 N asparagine          4.8         19           3
 P proline             3.3         13           1
 Q glutamine           4.0         16           2
 R arginine            5.3         21           2
 S serine              7.3         29           2
 T threonine           4.8         19           2
 V valine              7.0         28           2
 W tryptophan          1.8          7           2
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apolipoprotein L1 isoform a precursor 
APOL1                 1.000   apolipoprotein L1 isoform b precursor 
APOL1                 1.000   apolipoprotein L1 isoform a precursor 
APOL1                 0.942   apolipoprotein L1 isoform c precursor 
APOL2                 0.474   apolipoprotein L2 
APOL2                 0.474   apolipoprotein L2 
APOL3                 0.343   apolipoprotein L3 isoform 1 
APOL4                 0.282   apolipoprotein L4 isoform 2 precursor 
APOL4                 0.266   apolipoprotein L4 isoform 1 
APOL3                 0.169   apolipoprotein L3 isoform 3 
APOL3                 0.169   apolipoprotein L3 isoform 3 
APOL6                 0.159   apolipoprotein L6 
APOL5                 0.113   apolipoprotein L5 
APOLD1                0.028   apolipoprotein L domain containing 1 isoform 1 [Hom...
APOLD1                0.028   apolipoprotein L domain containing 1 isoform 2 [Hom...
KDM1                  0.011   amine oxidase (flavin containing) domain 2 isoform a...
GPI                   0.009   glucose phosphate isomerase 
SYNC                  0.008   syncoilin, intermediate filament 1 isoform 2 
SYNC                  0.008   syncoilin, intermediate filament 1 isoform 1 
ARHGAP21              0.007   Rho GTPase activating protein 21 
KTN1                  0.007   kinectin 1 isoform b 
KTN1                  0.007   kinectin 1 isoform c 
KIF16B                0.007   kinesin-like motor protein C20orf23 
CCDC49                0.007   coiled-coil domain containing 49 
SH3KBP1               0.005   SH3-domain kinase binding protein 1 isoform b 
SH3KBP1               0.005   SH3-domain kinase binding protein 1 isoform a 
JAKMIP2               0.005   Janus kinase and microtubule interacting protein 2 [...
IFT57                 0.005   estrogen-related receptor beta like 1 
PPAN-P2RY11           0.005   PPAN-P2RY11 protein 
PPAN                  0.005   peter pan homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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