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Search of human proteins with 13540576
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
(651 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens] 1328 0.0
gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens] 1328 0.0
gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens] 1328 0.0
gi|153791761 RMI1, RecQ mediated genome instability 1, homolog [... 59 1e-08
gi|5032113 survival motor neuron domain containing 1 [Homo sapiens] 55 2e-07
gi|13259529 survival of motor neuron 2, centromeric isoform b [H... 44 5e-04
gi|13259531 survival of motor neuron 2, centromeric isoform c [H... 44 5e-04
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 44 5e-04
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 44 5e-04
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 44 5e-04
gi|13259512 survival of motor neuron 1, telomeric isoform b [Hom... 44 5e-04
gi|47578107 delangin isoform B [Homo sapiens] 44 6e-04
gi|47578105 delangin isoform A [Homo sapiens] 44 6e-04
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 42 0.002
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 42 0.002
gi|38505161 tudor domain containing 1 [Homo sapiens] 42 0.002
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 37 0.044
gi|60097902 filaggrin [Homo sapiens] 37 0.057
gi|169163653 PREDICTED: similar to tudor domain containing 1 [Ho... 37 0.057
gi|169164192 PREDICTED: similar to tudor domain containing 1 [Ho... 37 0.057
gi|169163210 PREDICTED: similar to tudor domain containing 1 [Ho... 37 0.057
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 36 0.097
gi|7706589 GNAS complex locus NESP55 [Homo sapiens] 36 0.097
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 36 0.097
gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens] 36 0.097
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 35 0.17
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 35 0.22
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 35 0.22
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.22
gi|4504487 histidine rich calcium binding protein precursor [Hom... 35 0.28
>gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 1328 bits (3436), Expect = 0.0
Identities = 651/651 (100%), Positives = 651/651 (100%)
Query: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE
Sbjct: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
Query: 61 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP 120
VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP
Sbjct: 61 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP 120
Query: 121 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST 180
VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST
Sbjct: 121 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST 180
Query: 181 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM 240
KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM
Sbjct: 181 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM 240
Query: 241 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 300
GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ
Sbjct: 241 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 300
Query: 301 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 360
YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER
Sbjct: 301 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 360
Query: 361 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF 420
PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF
Sbjct: 361 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF 420
Query: 421 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD 480
AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD
Sbjct: 421 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD 480
Query: 481 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP 540
YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP
Sbjct: 481 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP 540
Query: 541 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV 600
EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV
Sbjct: 541 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV 600
Query: 601 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN 651
LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN
Sbjct: 601 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN 651
>gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]
Length = 744
Score = 1328 bits (3436), Expect = 0.0
Identities = 651/651 (100%), Positives = 651/651 (100%)
Query: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE
Sbjct: 94 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 153
Query: 61 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP 120
VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP
Sbjct: 154 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP 213
Query: 121 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST 180
VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST
Sbjct: 214 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST 273
Query: 181 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM 240
KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM
Sbjct: 274 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM 333
Query: 241 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 300
GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ
Sbjct: 334 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 393
Query: 301 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 360
YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER
Sbjct: 394 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 453
Query: 361 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF 420
PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF
Sbjct: 454 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF 513
Query: 421 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD 480
AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD
Sbjct: 514 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD 573
Query: 481 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP 540
YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP
Sbjct: 574 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP 633
Query: 541 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV 600
EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV
Sbjct: 634 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV 693
Query: 601 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN 651
LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN
Sbjct: 694 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN 744
>gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 1328 bits (3436), Expect = 0.0
Identities = 651/651 (100%), Positives = 651/651 (100%)
Query: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE
Sbjct: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
Query: 61 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP 120
VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP
Sbjct: 61 VEHLIEKWELQRSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMP 120
Query: 121 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST 180
VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST
Sbjct: 121 VKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEKST 180
Query: 181 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM 240
KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM
Sbjct: 181 KSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVM 240
Query: 241 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 300
GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ
Sbjct: 241 GPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 300
Query: 301 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 360
YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER
Sbjct: 301 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSER 360
Query: 361 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF 420
PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF
Sbjct: 361 PSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSF 420
Query: 421 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD 480
AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD
Sbjct: 421 AEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFNVNTD 480
Query: 481 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP 540
YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP
Sbjct: 481 YQNPVRSNSFIGVPNGEVEMPLKGRRIGPIKPAGPVTAVPCDDKIFYNSGPKRRSGPIKP 540
Query: 541 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV 600
EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV
Sbjct: 541 EKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEV 600
Query: 601 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN 651
LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN
Sbjct: 601 LLSNIKPIQTEAWEEEGTYDQTLEFRRGGDGQPRRSTRPTQQFYQPPRARN 651
>gi|153791761 RMI1, RecQ mediated genome instability 1, homolog
[Homo sapiens]
Length = 625
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
ML LQ+TDG + +E+ + + + PPGTK+ + G + + G LLL N VLGGE
Sbjct: 134 MLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGE 193
Query: 61 VEHLIEKWELQRSLSK 76
V+ L+E++ ++ L++
Sbjct: 194 VDALLEEYAQEKVLAR 209
>gi|5032113 survival motor neuron domain containing 1 [Homo sapiens]
Length = 238
Score = 55.1 bits (131), Expect = 2e-07
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 556 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQ--TEAW 613
WK GD+C A++ ED + Y AE+E + TA + F YGN E L N+KP++ +A
Sbjct: 73 WKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAK 132
Query: 614 EEEG 617
E+ G
Sbjct: 133 EDSG 136
>gi|13259529 survival of motor neuron 2, centromeric isoform b [Homo
sapiens]
Length = 262
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 531 PKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 590
PKR+ P K K + + + WK GD+C A++ ED Y A + ++ T VV
Sbjct: 70 PKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 126
Query: 591 FIDYGNYEEVLLSNI 605
+ YGN EE LS++
Sbjct: 127 YTGYGNREEQNLSDL 141
>gi|13259531 survival of motor neuron 2, centromeric isoform c [Homo
sapiens]
Length = 250
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 531 PKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 590
PKR+ P K K + + + WK GD+C A++ ED Y A + ++ T VV
Sbjct: 70 PKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 126
Query: 591 FIDYGNYEEVLLSNI 605
+ YGN EE LS++
Sbjct: 127 YTGYGNREEQNLSDL 141
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 531 PKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 590
PKR+ P K K + + + WK GD+C A++ ED Y A + ++ T VV
Sbjct: 70 PKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 126
Query: 591 FIDYGNYEEVLLSNI 605
+ YGN EE LS++
Sbjct: 127 YTGYGNREEQNLSDL 141
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 531 PKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 590
PKR+ P K K + + + WK GD+C A++ ED Y A + ++ T VV
Sbjct: 70 PKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 126
Query: 591 FIDYGNYEEVLLSNI 605
+ YGN EE LS++
Sbjct: 127 YTGYGNREEQNLSDL 141
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 531 PKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 590
PKR+ P K K + + + WK GD+C A++ ED Y A + ++ T VV
Sbjct: 70 PKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 126
Query: 591 FIDYGNYEEVLLSNI 605
+ YGN EE LS++
Sbjct: 127 YTGYGNREEQNLSDL 141
>gi|13259512 survival of motor neuron 1, telomeric isoform b [Homo
sapiens]
Length = 262
Score = 43.9 bits (102), Expect = 5e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 531 PKRRSGPIKPEKILESSIPMEYAKMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVK 590
PKR+ P K K + + + WK GD+C A++ ED Y A + ++ T VV
Sbjct: 70 PKRK--PAKKNKSQKKNTAASL-QQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVV 126
Query: 591 FIDYGNYEEVLLSNI 605
+ YGN EE LS++
Sbjct: 127 YTGYGNREEQNLSDL 141
>gi|47578107 delangin isoform B [Homo sapiens]
Length = 2697
Score = 43.5 bits (101), Expect = 6e-04
Identities = 97/455 (21%), Positives = 157/455 (34%), Gaps = 91/455 (20%)
Query: 168 NRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAAL 227
N NR V K K E K E EL ++ TE + + +++ N
Sbjct: 626 NENRLVETKSSENKLETKVETQTEELKQNES--RTTEC----KQNESTIVEPKQNENRLS 679
Query: 228 NVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVE 287
+ NKQ GR + + R E + G +RP P D
Sbjct: 680 DTKPNDNKQN-------NGRSETT-KSRPETPKQKGESRPETPKQKSDGHPETPKQKGDG 731
Query: 288 EPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVL 347
P++ P+Q + + + + G + RH R D+ +P EK P + Q++KS
Sbjct: 732 RPET-PKQKGESRPETPKQKNEGRPETPKHRHDNRRDSGKPSTEKKPEVSKHKQDTKS-- 788
Query: 348 EGSGLPRNRG---SERPSTSSVSEVWAE-------------------DRIKCDRPYS--- 382
+ L R +RP SVSE D+ + RP +
Sbjct: 789 DSPRLKSERAEALKQRPDGRSVSESLRRDHDNKQKSDDRGESERHRGDQSRVRRPETLRS 848
Query: 383 --------RYDRTKDTSYPLGSQHSDGAFK-----------------KRDNSMQSRSGK- 416
+ D +K +H G + K+ +S +SRS K
Sbjct: 849 SSRNEHGIKSDSSKTDKLERKHRHESGDSRERPSSGEQKSRPDSPRVKQGDSNKSRSDKL 908
Query: 417 GPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFN 476
G +K++ +G+ + + +++ P Y +S + N IK +K N
Sbjct: 909 GFKSPTSKDDKRTEGNKSKVDTNKAHPDNKAEFPSYLLGGRSGALKNFVIPKIKRDKDGN 968
Query: 477 VNTDYQNPVRSNSFIGVPNGEVEMPLKGRRIGPI-------KPAGPVTAVPCDD--KIFY 527
V + + G P +VE +IG + KP + + DD K+
Sbjct: 969 VTQE----TKKMEMKGEPKDKVE------KIGLVEDLNKGAKPVVVLQKLSLDDVQKLIK 1018
Query: 528 NSGPKRRSG--PI--KPEKILESSIPMEYAKMWKP 558
+ K RS PI KP K + SI K P
Sbjct: 1019 DREDKSRSSLKPIKNKPSKSNKGSIDQSVLKELPP 1053
>gi|47578105 delangin isoform A [Homo sapiens]
Length = 2804
Score = 43.5 bits (101), Expect = 6e-04
Identities = 97/455 (21%), Positives = 157/455 (34%), Gaps = 91/455 (20%)
Query: 168 NRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLEAAL 227
N NR V K K E K E EL ++ TE + + +++ N
Sbjct: 626 NENRLVETKSSENKLETKVETQTEELKQNES--RTTEC----KQNESTIVEPKQNENRLS 679
Query: 228 NVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVE 287
+ NKQ GR + + R E + G +RP P D
Sbjct: 680 DTKPNDNKQN-------NGRSETT-KSRPETPKQKGESRPETPKQKSDGHPETPKQKGDG 731
Query: 288 EPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVL 347
P++ P+Q + + + + G + RH R D+ +P EK P + Q++KS
Sbjct: 732 RPET-PKQKGESRPETPKQKNEGRPETPKHRHDNRRDSGKPSTEKKPEVSKHKQDTKS-- 788
Query: 348 EGSGLPRNRG---SERPSTSSVSEVWAE-------------------DRIKCDRPYS--- 382
+ L R +RP SVSE D+ + RP +
Sbjct: 789 DSPRLKSERAEALKQRPDGRSVSESLRRDHDNKQKSDDRGESERHRGDQSRVRRPETLRS 848
Query: 383 --------RYDRTKDTSYPLGSQHSDGAFK-----------------KRDNSMQSRSGK- 416
+ D +K +H G + K+ +S +SRS K
Sbjct: 849 SSRNEHGIKSDSSKTDKLERKHRHESGDSRERPSSGEQKSRPDSPRVKQGDSNKSRSDKL 908
Query: 417 GPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFSGIKIEKHFN 476
G +K++ +G+ + + +++ P Y +S + N IK +K N
Sbjct: 909 GFKSPTSKDDKRTEGNKSKVDTNKAHPDNKAEFPSYLLGGRSGALKNFVIPKIKRDKDGN 968
Query: 477 VNTDYQNPVRSNSFIGVPNGEVEMPLKGRRIGPI-------KPAGPVTAVPCDD--KIFY 527
V + + G P +VE +IG + KP + + DD K+
Sbjct: 969 VTQE----TKKMEMKGEPKDKVE------KIGLVEDLNKGAKPVVVLQKLSLDDVQKLIK 1018
Query: 528 NSGPKRRSG--PI--KPEKILESSIPMEYAKMWKP 558
+ K RS PI KP K + SI K P
Sbjct: 1019 DREDKSRSSLKPIKNKPSKSNKGSIDQSVLKELPP 1053
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 41.6 bits (96), Expect = 0.002
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 159 SNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMD 218
S + ++ GN ++ LQK K+ GK + + + + +K +T+MGF +E + +AL
Sbjct: 906 STSSCSSWGNAPKKGLQK--GMKTSGKQDEAW---IMSRLIKQLTDMGFPREPAEEALKS 960
Query: 219 NGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFD--- 275
N NL+ A++ LL +K V + RG G + LG P + + D
Sbjct: 961 NNMNLDQAMSALL----EKKV---DVDKRGLGVTDHNGMAAKPLGCRPPISKESSVDRPT 1013
Query: 276 FLESKMGTLNVEEPKSQP 293
FL+ G VEEP P
Sbjct: 1014 FLDKDGGL--VEEPTPSP 1029
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 41.6 bits (96), Expect = 0.002
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 159 SNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMD 218
S + ++ GN ++ LQK K+ GK + + + + +K +T+MGF +E + +AL
Sbjct: 909 STSSCSSWGNAPKKGLQK--GMKTSGKQDEAW---IMSRLIKQLTDMGFPREPAEEALKS 963
Query: 219 NGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFD--- 275
N NL+ A++ LL +K V + RG G + LG P + + D
Sbjct: 964 NNMNLDQAMSALL----EKKV---DVDKRGLGVTDHNGMAAKPLGCRPPISKESSVDRPT 1016
Query: 276 FLESKMGTLNVEEPKSQP 293
FL+ G VEEP P
Sbjct: 1017 FLDKDGGL--VEEPTPSP 1032
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 41.6 bits (96), Expect = 0.002
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 608
GD C A + ED+++YRA V A ++S + +V ++DYGN+E + L + PI
Sbjct: 545 GDICCAQFSEDDQWYRASVLA-YASEESVLVGYVDYGNFEILSLMRLCPI 593
Score = 37.4 bits (85), Expect = 0.044
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 608
GD C A Y D+ +YRA V L +S V + DYGN E + L ++PI
Sbjct: 994 GDACCAKYTSDDFWYRAVV--LGTSDTDVEVLYADYGNIETLPLCRVQPI 1041
Score = 36.6 bits (83), Expect = 0.075
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQT 610
G C A + D +YRA V+ + +G V F+DYGN EEV ++ I +
Sbjct: 766 GQPCCAFFAGDGSWYRALVKEILPNGHVKV-HFVDYGNIEEVTADELRMISS 816
Score = 32.0 bits (71), Expect = 1.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNI 605
G+ C A Y D + RA ++ + A V +IDYGN E + L+ I
Sbjct: 316 GEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEIIPLNRI 362
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 37.4 bits (85), Expect = 0.044
Identities = 81/377 (21%), Positives = 137/377 (36%), Gaps = 49/377 (12%)
Query: 96 QKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFEKQRTAAIAEVAKSKETKTFGGGGG 155
+K V + +S+E D R+ + K K R+ + E +KSKE +
Sbjct: 423 EKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKS-KEKSKSKERDSKHNRNE 481
Query: 156 GARSNLNMNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHIT---EMGFSKEAS 212
R + + G + V +KEK + S+GK + R K L+ + + SKE
Sbjct: 482 EKR--MRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKEKSKQLESKSNEHDHSKSKEKD 539
Query: 213 RQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPST 272
R+A + E + K K R R + R R R
Sbjct: 540 RRA---QSRSRECDI------TKGKHSYNSRTRERSRSRDRSR----------------- 573
Query: 273 LFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEK 332
++ + + +S+ ++ H +YR + G + R PP + R +
Sbjct: 574 -------RVRSRTHDRDRSRSKEYH--RYREQEYRRRGRSRSRERRTPPGRSRSKDRRRR 624
Query: 333 PPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSY 392
R R S+ +S RN+ S+ SE +E R+ SR + + S
Sbjct: 625 -RRDSRSSEREESQSRNKDKYRNQESKSSHRKENSE--SEKRMYSK---SRDHNSSNNSR 678
Query: 393 PLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQK-RGKRESQTSIPD 451
+ F K S Q K S + KE+ + SV+ NQK +G+ +
Sbjct: 679 EKKADRDQSPFSKIKQSSQDNELKS-SMLKNKEDEKIRSSVEKENQKSKGQENDHVHEKN 737
Query: 452 YFYDRKSQTINNEAFSG 468
+D +S +E SG
Sbjct: 738 KKFDHESSPGTDEDKSG 754
Score = 35.0 bits (79), Expect = 0.22
Identities = 34/165 (20%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 285 NVEEPKSQPQQLHQGQYRSSNTEQNGVKDN---NHLRHPPRNDTRQPRNEKPPRFQRDSQ 341
N + K + + H+ + + +N KD+ N ++ ++ +R EK +RDS+
Sbjct: 417 NRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKSKSKERDSK 476
Query: 342 NSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDG 401
++++ E R++G + + E ++ + K D+ SR ++H
Sbjct: 477 HNRNE-EKRMRSRSKGRDHENVKE-KEKQSDSKGK-DQERSRSKEKSKQLESKSNEHDHS 533
Query: 402 AFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQ 446
K++D QSRS +E + +G YN++ R + S+
Sbjct: 534 KSKEKDRRAQSRS---------RECDITKGKHSYNSRTRERSRSR 569
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 37.0 bits (84), Expect = 0.057
Identities = 79/387 (20%), Positives = 140/387 (36%), Gaps = 41/387 (10%)
Query: 124 TNDNDEFEKQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGNRNREVLQKEK----S 179
T + + +TA+ E A+S + G G + + +A G ++ S
Sbjct: 358 TRHAETSSRGQTASSHEQARSSPGERHGSGHQQSADSSRHSATGRGQASSAVSDRGHRGS 417
Query: 180 TKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNNLE--AALNVLLTSNKQK 237
+ S+ + E D +++ + G +++ +++ + ++ S ++
Sbjct: 418 SGSQASDSEGHSENSDTQSVSGHGKAGLRQQSHQESTRGRSGERSGRSGSSLYQVSTHEQ 477
Query: 238 PVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQL- 296
P G G GR S E+ ++R SA D + G+ S +Q
Sbjct: 478 PDSAHGRTGTSTG-GRQGSHHEQARDSSRHSASQEGQDTIRGHPGSSRGGRQGSHHEQSV 536
Query: 297 ----HQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEK--------------PPRFQR 338
H G + S T Q G D +H + R+ +RQ RNE+ Q
Sbjct: 537 NRSGHSGSHHSHTTSQ-GRSDASHGQSGSRSASRQTRNEEQSGDGTRHSGSRHHEASSQA 595
Query: 339 DSQNSKSVLEGSG----LPRNRGSERPSTSSVSEVWAEDRIKCDRPYSR------YDRTK 388
DS V +G RN+GS S S S+ +ED + SR ++++
Sbjct: 596 DSSRHSQVGQGQSSGPRTSRNQGSS-VSQDSDSQGHSEDSERWSGSASRNHHGSAQEQSR 654
Query: 389 DTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRE-SQT 447
D S S H D A +S S G + + S + G+R S+
Sbjct: 655 DGSRHPRSHHEDRA--GHGHSADSSRKSGTRHTQNSSSGQAASSHEQARSSAGERHGSRH 712
Query: 448 SIPDYFYDRKSQTINNEAFSGIKIEKH 474
+ R S T + +A S ++ H
Sbjct: 713 QLQSADSSRHSGTGHGQASSAVRDSGH 739
Score = 35.0 bits (79), Expect = 0.22
Identities = 61/272 (22%), Positives = 93/272 (34%), Gaps = 32/272 (11%)
Query: 252 GRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQL-----HQGQYRSSNT 306
GR S E+ ++R SA D + G+ S +Q H G Y S+T
Sbjct: 1464 GRQGSRHEQARNSSRHSASQDGQDTIRGHPGSSRGGRQGSYHEQSVDRSGHSG-YHHSHT 1522
Query: 307 EQNGVKDNNHLRHPPRNDTRQPRNEKP------------------PRFQRDSQNSKSVLE 348
G D +H + PR+ +RQ RNE+ R SQ +
Sbjct: 1523 TPQGRSDASHGQSGPRSASRQTRNEEQSGDGSRHSGSRHHEPSTRAGSSRHSQVGQGESA 1582
Query: 349 GSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDN 408
GS R +GS S SE +ED + SR Y + S + +
Sbjct: 1583 GSKTSRRQGSS-VSQDRDSEGHSEDSERRSESASR------NHYGSAREQSRHGSRNPRS 1635
Query: 409 SMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIP-DYFYDRKSQTINNEAFS 467
+ R+ G S ++++ Q +E S P + R Q+ ++ S
Sbjct: 1636 HQEDRASHGHSAESSRQSGTRHAETSSGGQAASSQEQARSSPGERHGSRHQQSADSSTDS 1695
Query: 468 GIKIEKHFNVNTDYQNPVRSNSFIGVPNGEVE 499
G + +V D N S S G E
Sbjct: 1696 GTGRRQDSSVVGDSGNRGSSGSQASDSEGHSE 1727
Score = 34.3 bits (77), Expect = 0.37
Identities = 39/155 (25%), Positives = 59/155 (38%), Gaps = 21/155 (13%)
Query: 295 QLHQGQYRSSNTEQ---NGVKDNNHLRHPPRNDTRQPRNE---KPPRFQRDSQNSKSVLE 348
+L Q Y S+ E +G K H H D +Q N+ K P N K
Sbjct: 80 KLAQAYYESTRKENLPISGHKHRKHSHHDKHEDNKQEENKENRKRPSSLERRNNRKGNKG 139
Query: 349 GSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDN 408
S PR G +R +SS K + YS R ++ G H + + K+++
Sbjct: 140 RSKSPRETGGKRHESSSEK--------KERKGYSPTHREEE----YGKNHHNSSKKEKNK 187
Query: 409 SMQSRSG---KGPSFAEAKENPLPQGSVDYNNQKR 440
+ +R G K S ++ +G DY N R
Sbjct: 188 TENTRLGDNRKRLSERLEEKEDNEEGVYDYENTGR 222
Score = 30.4 bits (67), Expect = 5.3
Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 9/173 (5%)
Query: 302 RSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSV-LEGSGLPRNRGSER 360
RS +++ N RH N ++ P E R +R S+ S+ EG R S
Sbjct: 259 RSRSSDGKSSSQVNRSRH--ENTSQVPLQESRTRKRRGSRVSQDRDSEGHSEDSERHSGS 316
Query: 361 PSTSSVSEVWAEDRIKCDRPYSR------YDRTKDTSYPLGSQHSDGAFKKRDNSMQSRS 414
S + W + R P S + + D+S G++H++ + + + S ++
Sbjct: 317 ASRNHHGSAWEQSRDGSRHPRSHDEDRASHGHSADSSRQSGTRHAETSSRGQTASSHEQA 376
Query: 415 GKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYDRKSQTINNEAFS 467
P + S ++ RG+ S S + SQ ++E S
Sbjct: 377 RSSPGERHGSGHQQSADSSRHSATGRGQASSAVSDRGHRGSSGSQASDSEGHS 429
>gi|169163653 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 37.0 bits (84), Expect = 0.057
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 557 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWE 614
+PG C A Y +D +FYRA + + +G V F+DYGN + + ++K + E E
Sbjct: 679 EPGLFCCARYSKDRRFYRAVITEI--NGYKINVYFLDYGNTDSIPFFDVKILLPEFCE 734
Score = 33.9 bits (76), Expect = 0.48
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 611
GD A Y DN YRA ++ + G + V+FIDYGN V S I +Q E
Sbjct: 1492 GDLVVAEYSGDNAIYRAVIKKI-LPGNSFEVEFIDYGNSAIVNTSKIYELQRE 1543
>gi|169164192 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 37.0 bits (84), Expect = 0.057
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 557 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWE 614
+PG C A Y +D +FYRA + + +G V F+DYGN + + ++K + E E
Sbjct: 679 EPGLFCCARYSKDRRFYRAVITEI--NGYKINVYFLDYGNTDSIPFFDVKILLPEFCE 734
Score = 33.9 bits (76), Expect = 0.48
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 611
GD A Y DN YRA ++ + G + V+FIDYGN V S I +Q E
Sbjct: 1492 GDLVVAEYSGDNAIYRAVIKKI-LPGNSFEVEFIDYGNSAIVNTSKIYELQRE 1543
>gi|169163210 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 37.0 bits (84), Expect = 0.057
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 557 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWE 614
+PG C A Y +D +FYRA + + +G V F+DYGN + + ++K + E E
Sbjct: 679 EPGLFCCARYSKDRRFYRAVITEI--NGYKINVYFLDYGNTDSIPFFDVKILLPEFCE 734
Score = 33.9 bits (76), Expect = 0.48
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 559 GDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 611
GD A Y DN YRA ++ + G + V+FIDYGN V S I +Q E
Sbjct: 1492 GDLVVAEYSGDNAIYRAVIKKI-LPGNSFEVEFIDYGNSAIVNTSKIYELQRE 1543
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 36.2 bits (82), Expect = 0.097
Identities = 43/178 (24%), Positives = 68/178 (38%), Gaps = 13/178 (7%)
Query: 290 KSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEG 349
KSQ Q + RS N +N K+ +H + R R PR ++S S+S
Sbjct: 339 KSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPR--KESGRSQS---- 392
Query: 350 SGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTS--YPLGSQHSDGAFKKRD 407
G P +R + S S A DR + PY DR++ S S +K RD
Sbjct: 393 -GSPNK---QRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARD 448
Query: 408 NSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDYFYD-RKSQTINNE 464
S K + ++ + + + + SQ P D R+S++ + E
Sbjct: 449 RSRSRSPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGSPSKERDHRRSRSPSKE 506
Score = 33.5 bits (75), Expect = 0.63
Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 26/210 (12%)
Query: 245 RGRGKGRGRIRSEDEEDLGN-ARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQYRS 303
R K R RS + +R +PS D S++G+ + E + + + R
Sbjct: 453 RSPNKARDHSRSRSPNKARDRSRSRSPSKERD--HSQLGSPSKERDHRRSRS--PSKERQ 508
Query: 304 SNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSERPST 363
++ K+ +H R + RQ R + P +RD S+S E ER
Sbjct: 509 CRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSE----------EREHR 558
Query: 364 SSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSFAEA 423
S S DR + P +R + S HS R S +SG A +
Sbjct: 559 QSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHS------RSRSPNKQSGYSRPRASS 612
Query: 424 KE-----NPLPQGSVDYNNQKRGKRESQTS 448
KE + P +++ + +ES S
Sbjct: 613 KEKAHSRSRTPSKEGNHSQSRTSSKESDPS 642
>gi|7706589 GNAS complex locus NESP55 [Homo sapiens]
Length = 245
Score = 36.2 bits (82), Expect = 0.097
Identities = 36/182 (19%), Positives = 69/182 (37%), Gaps = 26/182 (14%)
Query: 163 MNAAGNRNREVLQKEKSTKSEGKHEGVYRELVDEKALKHITEMGFSKEASRQALMDNGNN 222
+NA +V + ++S+ +HE EL + L++ E + E+ ++ +++ +
Sbjct: 65 LNAHHRSGAQVFPESPESESDHEHEEADLELSLPECLEYEEEFDYETESETESEIESETD 124
Query: 223 LEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMG 282
E T + P P +E E+D G P ST L ++
Sbjct: 125 FE-------TEPETAPTTEP------------ETEPEDDRGPVVPK-HSTFGQSLTQRLH 164
Query: 283 TLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQN 342
L + P + P + S E ++ L+ P D R P K P+ ++ +
Sbjct: 165 ALKLRSPDASPSRA-----PPSTQEPQSPREGEELK-PEDKDPRDPEESKEPKEEKQRRR 218
Query: 343 SK 344
K
Sbjct: 219 CK 220
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 36.2 bits (82), Expect = 0.097
Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 12/115 (10%)
Query: 234 NKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFD--FLESKMGTLNVEEPK- 290
+K KP P +GRG D G RPS PSTL + +++ E PK
Sbjct: 1327 DKAKPGFLPKGEPTRRGRGGTFRRGGRDPGG-RPSRPSTLRRPAYRDNQWNPRQSEVPKP 1385
Query: 291 --SQPQQLHQGQYRSSNTEQNGVKDNNHL---RHPPRND--TRQPRNEKPPRFQR 338
+P + H+ Q+ ++ K R PR TR PR +KPPRF+R
Sbjct: 1386 EDGEPPRRHE-QFIPIAADKRPPKFERKFDPARERPRRQRPTRPPRQDKPPRFRR 1439
Score = 30.4 bits (67), Expect = 5.3
Identities = 55/267 (20%), Positives = 99/267 (37%), Gaps = 18/267 (6%)
Query: 86 GGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDE-----FEKQRTAAIAE 140
G P PF P Q+ ++ + RR+ +++ V+ E E+QR AA AE
Sbjct: 427 GRPGPF-PSKQQVADEDEIWKQR--RRQQSEISAAVERARKRREEEERRMEEQRKAACAE 483
Query: 141 VAKSKETKTFGGGGGGARSNLNMNAAGNRNREV-LQKEKSTKSEGKHEGVYRELVDEKAL 199
K + K G + R RE ++EK + E + E +E ++
Sbjct: 484 KLKRLDEKL-----GILEKQPSPEEIREREREKEREREKELEKEQEQERE-KEREKDRER 537
Query: 200 KHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGKGRGRIRSEDE 259
+ E KE +Q M+ E + K+K + + + + R + E
Sbjct: 538 QQEKEKELEKEQEKQREMEKERKQEKEKELERQKEKEKELQKMKEQEKECELEKEREKLE 597
Query: 260 EDLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNTEQNGVKDNNHLRH 319
E + P+ + + ES+ EEP Q ++ + ++ ++
Sbjct: 598 EKIEPREPNL-EPMVEKQESENSCNKEEEPVFTRQDSNRSEKEATPVVHETEPESGSQPR 656
Query: 320 PP--RNDTRQPRNEKPPRFQRDSQNSK 344
P +Q + PPRFQR + K
Sbjct: 657 PAVLSGYFKQFQKSLPPRFQRQQEQMK 683
>gi|55770884 ubiquitin associated domain containing 1 [Homo sapiens]
Length = 405
Score = 36.2 bits (82), Expect = 0.097
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 192 ELVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGR 247
E VDE AL+ +TEMGF + + +AL N ++ A+ L+ + + P + PL G+
Sbjct: 190 ERVDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI-EHAEDPTIDTPLPGQ 244
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 35.4 bits (80), Expect = 0.17
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 32/196 (16%)
Query: 275 DFLESKMGTLNVEEP---KSQPQQLHQGQYRSSNTEQNGVKDNNHLRHPPRNDTRQPRNE 331
+F +S L V+ K Q QQ Q Q+++S+ +G ++++ + + + + +
Sbjct: 85 EFWKSSPSILAVQRSAILKKQQQQQQQQQHQASSN--SGSEEDSSSSEDSDDSSSEVKRK 142
Query: 332 KPPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTS 391
K ++ + GSG P GS+ S ++ CD S Y+
Sbjct: 143 K-------HKDEDWQMSGSGSPSQSGSDSESEEE------REKSSCDETESDYE------ 183
Query: 392 YPLGSQHSDGAFKKRDNSMQSRSGK---GPSFAEAKENPLPQGSVDYNNQKRGKRESQTS 448
P S +K N +S++GK G + + DY+N KR R T
Sbjct: 184 -PKNKVKS----RKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQATV 238
Query: 449 IPDYFYDRKSQTINNE 464
Y D + +T +++
Sbjct: 239 NVSYKEDEEMKTDSDD 254
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 35.0 bits (79), Expect = 0.22
Identities = 64/309 (20%), Positives = 111/309 (35%), Gaps = 28/309 (9%)
Query: 72 RSLSKHNRSNIGTEGGPPPFVPFGQKCVSHVQVDSRELDRRKTLQVTMPVKPTNDNDEFE 131
RS S+H+R + G SH + SR ++ + + + E
Sbjct: 195 RSRSRHSRKSRSRSGSSKS---------SHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKE 245
Query: 132 KQRTAAIAEVAKSKETKTFGGGGGGARSNLNMNAAGN-RNREVLQKEKST-----KSEGK 185
K R+ + +++++ G +RS A +N + + K KS KS+ K
Sbjct: 246 KSRSPS------KEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSK 299
Query: 186 HEGVYRELVDEKALKHITEMGFSKEAS----RQALMDNGNNLEAALNVLLTSNKQKPVMG 241
+E E+ + G S+E S R G + + + + +K+K
Sbjct: 300 SRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKR 359
Query: 242 PPLRGRGKGRGRIRSEDEEDLGNARPS-APSTLFDFLESKMGTLNVEEPKSQPQQLHQGQ 300
R + R R +SE G+ R S A S+ E + + +S ++ +
Sbjct: 360 SREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAK 419
Query: 301 YRSSNTEQNGVKDNNHLRHPPRNDTRQPRNEKP--PRFQRDSQNSKSVLEGSGLPRNRGS 358
SS E G +N R+ +R KP P R S S R+R +
Sbjct: 420 SESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSA 479
Query: 359 ERPSTSSVS 367
R + S S
Sbjct: 480 SRSPSRSRS 488
Score = 33.9 bits (76), Expect = 0.48
Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 55/308 (17%)
Query: 156 GARSNLNMNAAGNRNREVLQKEKS---TKSEGKHEGVYRELVDEKALKHITEMGFSKEAS 212
G + L + G+R R + +S ++S +H R H S+ S
Sbjct: 167 GRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGS 226
Query: 213 RQALMDNGNNLEAALNVLLTSNKQKPVMGPPLRGRGK----GRGRIRSEDEEDLGNARPS 268
R + + S K+K + R + G+ R +S+D+ +
Sbjct: 227 RSRSKSRSRSQSRS-----RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAE------- 274
Query: 269 APSTLFDFLESKMGTLNVEEPKSQPQQLHQGQYRSSNT--------EQNGVKDNNHLRHP 320
E NV +PKS+ H+ + +S + E+ G +
Sbjct: 275 ---------EKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEK 325
Query: 321 PRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRP 380
+R K R SKS + G R+R R + R
Sbjct: 326 SLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRS---------------RS 370
Query: 381 YSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKR 440
S+ +R++ S+ KK++++ +S+S + PS + +KE + + ++Q+
Sbjct: 371 RSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQS-RSPSRSVSKER---EHAKSESSQRE 426
Query: 441 GKRESQTS 448
G+ ES+ +
Sbjct: 427 GRGESENA 434
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 35.0 bits (79), Expect = 0.22
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 14/130 (10%)
Query: 338 RDSQNSKSVLEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYD-----RTKDTSY 392
+D Q +K + S +++ E+ STS S ++ DR YS Y+ R + S
Sbjct: 541 KDEQINKGHCDSSTRIKSKKEEKRSTSLSSPRNLNSSVRGDRVYSPYNHRHRKRGRSRSS 600
Query: 393 PLGSQHSDGAFKKRDNSMQSRSGKGPSFAEAKENPLPQGSVDYNNQKRGKRESQTSIPDY 452
SQ G +K + + ++E+ P+G +R K+ S+T D
Sbjct: 601 DSRSQSRSGHDQKNHRKHHGKKRMKSKRSRSRESSRPRG-------RRDKKRSRTR--DS 651
Query: 453 FYDRKSQTIN 462
+ R+SQT++
Sbjct: 652 SWSRRSQTLS 661
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.0 bits (79), Expect = 0.22
Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 23/222 (10%)
Query: 232 TSNKQKPVMGPPLRGRGKGRGRIRSEDEEDLGNARPSAPSTLFDFLESKMGTLNVEEPKS 291
T Q+PV P + R +S ++ ++ S+P + S+ + + E PK
Sbjct: 384 TPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKP 443
Query: 292 QPQQLHQGQYRSSNTEQN-----GVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSV 346
P + SS T +N +D +H P R R R+ P +R S++
Sbjct: 444 APAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSR---RMGRSRSPATAKRGRSRSRT- 499
Query: 347 LEGSGLPRNRGSERPSTSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKR 406
P RG R + + R R R R++ P S+ + ++R
Sbjct: 500 ------PTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRN--TQRR 551
Query: 407 DNSMQSRSGKGPSFAEAKENPLPQG-SVDYNNQKRGKRESQT 447
S +R G+ S +P +G S +RG+ S+T
Sbjct: 552 GRSRSARRGRSHS-----RSPATRGRSRSRTPARRGRSRSRT 588
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 34.7 bits (78), Expect = 0.28
Identities = 42/201 (20%), Positives = 76/201 (37%), Gaps = 14/201 (6%)
Query: 255 RSEDEE---DLGNARPSAPSTLFDFLESKMGTLNVEEPKSQPQQ----LHQGQYRSSNTE 307
R EDEE +LG+ PS + D +++E P + R ++E
Sbjct: 424 REEDEEVSAELGHQAPSHRQSHQDEETGHGQRGSIKEMSHHPPGHTVVKDRSHLRKDDSE 483
Query: 308 QNGVKDNNHLRHPPRNDTRQPRNEKPPRFQRDSQNSKSVLEGSGLPRNRGSE-----RPS 362
+ K+ + H +++ + + RD ++ + EG GL N+ E
Sbjct: 484 EEKEKEEDPGSHEEDDESSEQGEKGTHHGSRDQEDEEDEEEGHGLSLNQEEEEEEDKEEE 543
Query: 363 TSSVSEVWAEDRIKCDRPYSRYDRTKDTSYPLGSQHSDGAFKKRDNSMQSR--SGKGPSF 420
E E+R + P S ++ G + + F N + R +G S
Sbjct: 544 EEEEDEERREERAEVGAPLSPDHSEEEEEEEEGLEEDEPRFTIIPNPLDRREEAGGASSE 603
Query: 421 AEAKENPLPQGSVDYNNQKRG 441
E+ E+ PQ + +Y N + G
Sbjct: 604 EESGEDTGPQDAQEYGNYQPG 624
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,245,358
Number of Sequences: 37866
Number of extensions: 1417952
Number of successful extensions: 3897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 3728
Number of HSP's gapped (non-prelim): 225
length of query: 651
length of database: 18,247,518
effective HSP length: 109
effective length of query: 542
effective length of database: 14,120,124
effective search space: 7653107208
effective search space used: 7653107208
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.