Guide to the Human Genome
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Name: KIAA0020 Sequence: fasta or formatted (648aa) NCBI GI: 109948283
Description:

KIAA0020 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         46           2
 C cysteine            1.1          7           1
 D aspartate           5.2         34           2
 E glutamate           7.1         46           2
 F phenylalanine       2.9         19           2
 G glycine             4.9         32           2
 H histidine           3.1         20           1
 I isoleucine          6.0         39           3
 K lysine             13.6         88           5
 L leucine             9.6         62           2
 M methionine          2.3         15           1
 N asparagine          3.2         21           1
 P proline             3.1         20           2
 Q glutamine           4.6         30           2
 R arginine            4.8         31           3
 S serine              6.9         45           2
 T threonine           4.6         30           1
 V valine              6.5         42           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KIAA0020 protein 
PUM1                  0.038   pumilio 1 isoform 2 
PUM1                  0.036   pumilio 1 isoform 1 
PUM2                  0.035   pumilio homolog 2 
LOC100133599          0.014   PREDICTED: hypothetical protein 
FAM133B               0.012   hypothetical protein LOC257415 isoform 2 
FAM133B               0.012   hypothetical protein LOC257415 isoform 1 
CYLC2                 0.012   cylicin 2 
ASPH                  0.012   aspartate beta-hydroxylase isoform d 
ASPH                  0.012   aspartate beta-hydroxylase isoform e 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 1 
TRAF3IP1              0.011   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.011   TNF receptor-associated factor 3 interacting protein...
SFRS11                0.010   splicing factor, arginine/serine-rich 11 
FAM133A               0.010   hypothetical protein LOC286499 
RNF20                 0.010   ring finger protein 20 
LOC731605             0.010   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.010   PREDICTED: similar to BCL2-associated transcription...
LOC100133599          0.009   PREDICTED: hypothetical protein 
BCLAF1                0.009   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.009   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.009   BCL2-associated transcription factor 1 isoform 1 [Hom...
NKTR                  0.009   natural killer-tumor recognition sequence 
PCF11                 0.009   pre-mRNA cleavage complex II protein Pcf11 
HTATSF1               0.008   HIV-1 Tat specific factor 1 
HTATSF1               0.008   HIV-1 Tat specific factor 1 
MYO10                 0.008   myosin X 
SMC1A                 0.008   structural maintenance of chromosomes 1A 
BAZ1B                 0.008   bromodomain adjacent to zinc finger domain, 1B [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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