Guide to the Human Genome
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Name: CCT3 Sequence: fasta or formatted (544aa) NCBI GI: 58761486
Description:

chaperonin containing TCP1, subunit 3 isoform b

Referenced in:

Heat-Shock Proteins and Chaperonins

Other entries for this name:
alt prot [507aa] chaperonin containing TCP1, subunit 3 isoform c
alt prot [545aa] chaperonin containing TCP1, subunit 3 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         39           2
 C cysteine            1.8         10           1
 D aspartate           6.2         34           2
 E glutamate           7.7         42           3
 F phenylalanine       0.9          5           1
 G glycine             6.6         36           3
 H histidine           1.7          9           1
 I isoleucine          9.6         52           2
 K lysine              6.6         36           3
 L leucine             8.5         46           3
 M methionine          4.0         22           2
 N asparagine          3.5         19           2
 P proline             3.3         18           1
 Q glutamine           4.6         25           2
 R arginine            6.4         35           2
 S serine              5.9         32           2
 T threonine           6.2         34           2
 V valine              6.8         37           2
 W tryptophan          0.7          4           1
 Y tyrosine            1.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chaperonin containing TCP1, subunit 3 isoform b [Hom... 
CCT3                  0.995   chaperonin containing TCP1, subunit 3 isoform a [Hom...
CCT3                  0.905   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT4                  0.264   chaperonin containing TCP1, subunit 4 (delta) 
CCT5                  0.259   chaperonin containing TCP1, subunit 5 (epsilon) [Hom...
CCT7                  0.249   chaperonin containing TCP1, subunit 7 isoform a [Homo...
TCP1                  0.245   T-complex protein 1 isoform a 
CCT6A                 0.230   chaperonin containing TCP1, subunit 6A isoform a [Hom...
CCT6B                 0.224   chaperonin containing TCP1, subunit 6B 
CCT2                  0.188   chaperonin containing TCP1, subunit 2 
CCT8                  0.180   chaperonin containing TCP1, subunit 8 (theta) 
CCT6A                 0.172   chaperonin containing TCP1, subunit 6A isoform b [Ho...
TCP1                  0.137   T-complex protein 1 isoform b 
CCT7                  0.133   chaperonin containing TCP1, subunit 7 isoform b [Hom...
CCT8L2                0.124   T-complex protein 1 
PIKFYVE               0.071   phosphatidylinositol-3-phosphate 5-kinase type III ...
MKKS                  0.049   McKusick-Kaufman syndrome protein 
MKKS                  0.049   McKusick-Kaufman syndrome protein 
HSPD1                 0.030   chaperonin 
HSPD1                 0.030   chaperonin 
BBS10                 0.022   Bardet-Biedl syndrome 10 
BBS12                 0.010   Bardet-Biedl syndrome 12 
MOV10L1               0.007   MOV10-like 1 
RASSF8                0.007   Ras association (RalGDS/AF-6) domain family (N-termi...
SPC25                 0.007   spindle pole body component 25 
ZNF407                0.006   zinc finger protein 407 isoform 3 
ZNF407                0.006   zinc finger protein 407 isoform 2 
ZNF407                0.006   zinc finger protein 407 isoform 1 
RPS18                 0.006   ribosomal protein S18 
CAMK2G                0.005   calcium/calmodulin-dependent protein kinase II gamma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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