Guide to the Human Genome
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Name: HSPD1 Sequence: fasta or formatted (573aa) NCBI GI: 31542947
Description:

chaperonin

Referenced in:

Heat-Shock Proteins and Chaperonins
Mitochondria

Other entries for this name:
alt mRNA [573aa] chaperonin
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         57           2
 C cysteine            0.5          3           1
 D aspartate           6.5         37           2
 E glutamate           7.5         43           2
 F phenylalanine       1.7         10           1
 G glycine             9.8         56           3
 H histidine           0.5          3           1
 I isoleucine          7.5         43           2
 K lysine              9.2         53           2
 L leucine             8.4         48           2
 M methionine          3.1         18           1
 N asparagine          3.5         20           2
 P proline             3.3         19           1
 Q glutamine           3.0         17           1
 R arginine            3.8         22           2
 S serine              4.4         25           3
 T threonine           5.9         34           3
 V valine              9.9         57           3
 W tryptophan          0.2          1           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chaperonin 
HSPD1                 1.000   chaperonin 
CCT2                  0.057   chaperonin containing TCP1, subunit 2 
CCT4                  0.053   chaperonin containing TCP1, subunit 4 (delta) 
CCT7                  0.049   chaperonin containing TCP1, subunit 7 isoform a [Homo...
CCT5                  0.040   chaperonin containing TCP1, subunit 5 (epsilon) [Hom...
CCT6A                 0.035   chaperonin containing TCP1, subunit 6A isoform a [Hom...
CCT6B                 0.033   chaperonin containing TCP1, subunit 6B 
CCT3                  0.032   chaperonin containing TCP1, subunit 3 isoform a [Hom...
TCP1                  0.031   T-complex protein 1 isoform a 
CCT3                  0.029   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT3                  0.019   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT6A                 0.019   chaperonin containing TCP1, subunit 6A isoform b [Ho...
CCT8                  0.014   chaperonin containing TCP1, subunit 8 (theta) 
CCT8L2                0.012   T-complex protein 1 
CCT7                  0.011   chaperonin containing TCP1, subunit 7 isoform b [Hom...
TAL1                  0.009   T-cell acute lymphocytic leukemia 1 
EEA1                  0.008   early endosome antigen 1, 162kD 
MYO18A                0.008   myosin 18A isoform b 
MYO18A                0.008   myosin 18A isoform a 
BBS10                 0.007   Bardet-Biedl syndrome 10 
KIF21B                0.007   kinesin family member 21B 
HDLBP                 0.007   high density lipoprotein binding protein 
HDLBP                 0.007   high density lipoprotein binding protein 
SIKE                  0.006   suppressor of IKK epsilon isoform 1 
SIKE                  0.006   suppressor of IKK epsilon isoform 2 
MACF1                 0.005   microfilament and actin filament cross-linker protei...
MACF1                 0.005   microfilament and actin filament cross-linker protei...
LETM1                 0.005   leucine zipper-EF-hand containing transmembrane prote...
GRIN2D                0.005   N-methyl-D-aspartate receptor subunit 2D precursor ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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