Guide to the Human Genome
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Name: RPS18 Sequence: fasta or formatted (152aa) NCBI GI: 11968182
Description:

ribosomal protein S18

Referenced in:

Ribosomes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          8           1
 C cysteine            0.0          0           0
 D aspartate           5.9          9           1
 E glutamate           4.6          7           1
 F phenylalanine       2.6          4           1
 G glycine             7.9         12           1
 H histidine           3.3          5           1
 I isoleucine          7.2         11           1
 K lysine             10.5         16           3
 L leucine             9.2         14           1
 M methionine          1.3          2           1
 N asparagine          3.9          6           1
 P proline             2.0          3           1
 Q glutamine           3.9          6           1
 R arginine           13.2         20           2
 S serine              2.0          3           1
 T threonine           5.9          9           2
 V valine              7.9         12           2
 W tryptophan          1.3          2           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein S18 
CCT3                  0.021   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT3                  0.021   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT3                  0.021   chaperonin containing TCP1, subunit 3 isoform a [Hom...
HDAC4                 0.014   histone deacetylase 4 
TRIP11                0.014   thyroid hormone receptor interactor 11 
KIAA1147              0.014   hypothetical protein LOC57189 
RPS6KA5               0.011   ribosomal protein S6 kinase, polypeptide 5 isoform b...
RPS6KA5               0.011   ribosomal protein S6 kinase, polypeptide 5 isoform a...
KIAA1267              0.011   hypothetical protein LOC284058 
KIF15                 0.011   kinesin family member 15 
TTN                   0.011   titin isoform N2-A 
TTN                   0.011   titin isoform novex-2 
TTN                   0.011   titin isoform novex-1 
TTN                   0.011   titin isoform N2-B 
UTP14A                0.011   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
DAPK3                 0.007   death-associated protein kinase 3 
MLPH                  0.007   melanophilin isoform 2 
MLPH                  0.007   melanophilin isoform 1 
ODZ4                  0.007   odz, odd Oz/ten-m homolog 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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