Guide to the Human Genome
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Name: TCP1 Sequence: fasta or formatted (556aa) NCBI GI: 57863257
Description:

T-complex protein 1 isoform a

Referenced in:

Heat-Shock Proteins and Chaperonins
Small RNAs in RNA Processing

Other entries for this name:
alt prot [401aa] T-complex protein 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         57           3
 C cysteine            1.6          9           1
 D aspartate           6.7         37           2
 E glutamate           6.7         37           2
 F phenylalanine       2.0         11           2
 G glycine             6.5         36           3
 H histidine           1.4          8           1
 I isoleucine          8.1         45           2
 K lysine              7.2         40           1
 L leucine            10.1         56           2
 M methionine          2.7         15           1
 N asparagine          4.9         27           1
 P proline             2.5         14           1
 Q glutamine           3.1         17           1
 R arginine            4.9         27           2
 S serine              6.5         36           2
 T threonine           5.0         28           2
 V valine              8.3         46           2
 W tryptophan          0.2          1           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-complex protein 1 isoform a 
TCP1                  0.717   T-complex protein 1 isoform b 
CCT7                  0.266   chaperonin containing TCP1, subunit 7 isoform a [Homo...
CCT2                  0.258   chaperonin containing TCP1, subunit 2 
CCT3                  0.250   chaperonin containing TCP1, subunit 3 isoform a [Hom...
CCT3                  0.244   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT4                  0.241   chaperonin containing TCP1, subunit 4 (delta) 
CCT5                  0.232   chaperonin containing TCP1, subunit 5 (epsilon) [Hom...
CCT8                  0.211   chaperonin containing TCP1, subunit 8 (theta) 
CCT6B                 0.208   chaperonin containing TCP1, subunit 6B 
CCT6A                 0.208   chaperonin containing TCP1, subunit 6A isoform a [Hom...
CCT3                  0.205   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT6A                 0.150   chaperonin containing TCP1, subunit 6A isoform b [Ho...
CCT7                  0.142   chaperonin containing TCP1, subunit 7 isoform b [Hom...
CCT8L2                0.093   T-complex protein 1 
HSPD1                 0.032   chaperonin 
HSPD1                 0.032   chaperonin 
BBS10                 0.023   Bardet-Biedl syndrome 10 
MKKS                  0.014   McKusick-Kaufman syndrome protein 
MKKS                  0.014   McKusick-Kaufman syndrome protein 
GLYATL1               0.008   glycine-N-acyltransferase-like 1 
C14orf166             0.007   homeobox prox 1 
MLH3                  0.004   mutL homolog 3 isoform 1 
CMYA5                 0.004   cardiomyopathy associated 5 
NOL8                  0.004   nucleolar protein 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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