Guide to the Human Genome
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Name: PIKFYVE Sequence: fasta or formatted (2098aa) NCBI GI: 121583483
Description:

phosphatidylinositol-3-phosphate 5-kinase type III isoform 2

Referenced in:

Inositol Pathways
Zinc Finger Proteins

Other entries for this name:
alt prot [451aa] phosphatidylinositol-3-phosphate 5-kinase type III isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8        101           2
 C cysteine            2.2         46           2
 D aspartate           6.0        126           3
 E glutamate           6.8        142           2
 F phenylalanine       4.1         85           2
 G glycine             5.1        106           3
 H histidine           2.9         60           2
 I isoleucine          4.6         96           2
 K lysine              6.1        127           2
 L leucine             9.4        197           3
 M methionine          2.4         50           2
 N asparagine          3.6         76           2
 P proline             5.8        121           2
 Q glutamine           5.6        118           2
 R arginine            5.6        117           3
 S serine             10.6        223           4
 T threonine           5.2        110           2
 V valine              5.5        116           3
 W tryptophan          1.0         22           1
 Y tyrosine            2.8         59           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidylinositol-3-phosphate 5-kinase type III ... 
PIKFYVE               0.159   phosphatidylinositol-3-phosphate 5-kinase type III i...
CCT3                  0.018   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT3                  0.018   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT3                  0.018   chaperonin containing TCP1, subunit 3 isoform a [Hom...
ZFYVE21               0.013   zinc finger, FYVE domain containing 21 
ZFYVE28               0.012   zinc finger, FYVE domain containing 28 
ZFYVE16               0.011   zinc finger, FYVE domain containing 16 
ZFYVE16               0.011   zinc finger, FYVE domain containing 16 
ZFYVE9                0.010   zinc finger, FYVE domain containing 9 isoform 1 [Hom...
MTMR3                 0.010   myotubularin-related protein 3 isoform c 
RUFY1                 0.010   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.010   RUN and FYVE domain-containing 1 isoform b 
RUFY1                 0.010   RUN and FYVE domain-containing 1 isoform a 
ZFYVE9                0.010   zinc finger, FYVE domain containing 9 isoform 3 [Hom...
ZFYVE9                0.010   zinc finger, FYVE domain containing 9 isoform 2 [Homo...
MTMR3                 0.010   myotubularin-related protein 3 isoform b 
FYCO1                 0.009   FYVE and coiled-coil domain containing 1 
PIP4K2A               0.009   phosphatidylinositol-5-phosphate 4-kinase, type II, a...
PIP4K2C               0.009   phosphatidylinositol-5-phosphate 4-kinase, type II,...
PIP4K2C               0.009   phosphatidylinositol-5-phosphate 4-kinase, type II,...
PIP4K2C               0.009   phosphatidylinositol-5-phosphate 4-kinase, type II,...
PIP5KL1               0.009   phosphatidylinositol-4-phosphate 5-kinase-like 1 is...
MTMR4                 0.009   myotubularin related protein 4 
ZFYVE1                0.009   zinc finger, FYVE domain containing 1 isoform 2 [Hom...
ZFYVE1                0.009   zinc finger, FYVE domain containing 1 isoform 1 [Hom...
CCT6B                 0.008   chaperonin containing TCP1, subunit 6B 
MTMR3                 0.008   myotubularin-related protein 3 isoform a 
RUFY2                 0.008   RUN and FYVE domain-containing 2 isoform a 
PIP4K2B               0.008   phosphatidylinositol-5-phosphate 4-kinase, type II, b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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