Guide to the Human Genome
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Name: CCT7 Sequence: fasta or formatted (339aa) NCBI GI: 58331185
Description:

chaperonin containing TCP1, subunit 7 isoform b

Referenced in:

Heat-Shock Proteins and Chaperonins

Other entries for this name:
alt prot [543aa] chaperonin containing TCP1, subunit 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         39           2
 C cysteine            2.1          7           1
 D aspartate           5.9         20           1
 E glutamate           7.4         25           2
 F phenylalanine       3.8         13           2
 G glycine             7.7         26           3
 H histidine           2.1          7           2
 I isoleucine          6.8         23           2
 K lysine              5.9         20           2
 L leucine             7.1         24           2
 M methionine          2.9         10           2
 N asparagine          4.4         15           2
 P proline             3.2         11           1
 Q glutamine           3.5         12           2
 R arginine            6.2         21           2
 S serine              4.1         14           1
 T threonine           5.0         17           1
 V valine              6.5         22           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chaperonin containing TCP1, subunit 7 isoform b [Hom... 
CCT7                  0.994   chaperonin containing TCP1, subunit 7 isoform a [Homo...
TCP1                  0.226   T-complex protein 1 isoform b 
TCP1                  0.226   T-complex protein 1 isoform a 
CCT3                  0.210   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT3                  0.210   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT3                  0.210   chaperonin containing TCP1, subunit 3 isoform a [Hom...
CCT2                  0.206   chaperonin containing TCP1, subunit 2 
CCT4                  0.191   chaperonin containing TCP1, subunit 4 (delta) 
CCT6A                 0.165   chaperonin containing TCP1, subunit 6A isoform b [Ho...
CCT6A                 0.165   chaperonin containing TCP1, subunit 6A isoform a [Hom...
CCT6B                 0.163   chaperonin containing TCP1, subunit 6B 
CCT5                  0.162   chaperonin containing TCP1, subunit 5 (epsilon) [Hom...
CCT8                  0.143   chaperonin containing TCP1, subunit 8 (theta) 
CCT8L2                0.079   T-complex protein 1 
PIKFYVE               0.023   phosphatidylinositol-3-phosphate 5-kinase type III ...
HSPD1                 0.018   chaperonin 
HSPD1                 0.018   chaperonin 
MKKS                  0.012   McKusick-Kaufman syndrome protein 
MKKS                  0.012   McKusick-Kaufman syndrome protein 
MRE11A                0.009   meiotic recombination 11 homolog A isoform 2 
MRE11A                0.009   meiotic recombination 11 homolog A isoform 1 
AIFM3                 0.008   apoptosis-inducing factor, mitochondrion-associated...
AIFM3                 0.008   apoptosis-inducing factor, mitochondrion-associated,...
AIFM3                 0.008   apoptosis-inducing factor, mitochondrion-associated,...
NEB                   0.008   nebulin 
KIAA0922              0.008   hypothetical protein LOC23240 isoform 2 
KIAA0922              0.008   hypothetical protein LOC23240 isoform 1 
LOC100129492          0.006   PREDICTED: similar to small nuclear ribonucleoprote...
SNRPD1                0.006   small nuclear ribonucleoprotein D1 polypeptide 16kDa ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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