Guide to the Human Genome
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Name: MKKS Sequence: fasta or formatted (570aa) NCBI GI: 9055272
Description:

McKusick-Kaufman syndrome protein

Referenced in:

Planar Cell Polarity

Other entries for this name:
alt mRNA [570aa] McKusick-Kaufman syndrome protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         29           2
 C cysteine            4.6         26           2
 D aspartate           3.9         22           2
 E glutamate           5.3         30           2
 F phenylalanine       2.3         13           2
 G glycine             6.0         34           3
 H histidine           3.3         19           1
 I isoleucine          6.3         36           2
 K lysine              4.9         28           2
 L leucine            15.8         90           3
 M methionine          1.4          8           1
 N asparagine          3.5         20           1
 P proline             4.0         23           1
 Q glutamine           3.7         21           1
 R arginine            3.7         21           2
 S serine              9.3         53           2
 T threonine           8.1         46           2
 V valine              6.5         37           3
 W tryptophan          0.9          5           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   McKusick-Kaufman syndrome protein 
MKKS                  1.000   McKusick-Kaufman syndrome protein 
CCT3                  0.046   chaperonin containing TCP1, subunit 3 isoform a [Hom...
CCT3                  0.046   chaperonin containing TCP1, subunit 3 isoform b [Hom...
CCT4                  0.033   chaperonin containing TCP1, subunit 4 (delta) 
CCT3                  0.028   chaperonin containing TCP1, subunit 3 isoform c [Hom...
CCT5                  0.025   chaperonin containing TCP1, subunit 5 (epsilon) [Hom...
CCT2                  0.022   chaperonin containing TCP1, subunit 2 
CCT8                  0.020   chaperonin containing TCP1, subunit 8 (theta) 
CCT8L2                0.014   T-complex protein 1 
CCT7                  0.013   chaperonin containing TCP1, subunit 7 isoform a [Homo...
TCP1                  0.013   T-complex protein 1 isoform a 
BBS10                 0.013   Bardet-Biedl syndrome 10 
CCT7                  0.007   chaperonin containing TCP1, subunit 7 isoform b [Hom...
TCP1                  0.006   T-complex protein 1 isoform b 
GORAB                 0.004   golgin, RAB6-interacting isoform a 
GORAB                 0.004   golgin, RAB6-interacting isoform b 
OR9Q2                 0.004   olfactory receptor, family 9, subfamily Q, member 2 ...
MYH7                  0.004   myosin, heavy chain 7, cardiac muscle, beta 
ZNF66                 0.004   PREDICTED: zinc finger protein 66 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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