Guide to the Human Genome
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Name: RCHY1 Sequence: fasta or formatted (261aa) NCBI GI: 58331195
Description:

ring finger and CHY zinc finger domain containing 1 isoform 1

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [200aa] ring finger and CHY zinc finger domain containing 1 isoform 2
alt prot [252aa] ring finger and CHY zinc finger domain containing 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         12           2
 C cysteine           11.1         29           2
 D aspartate           6.5         17           2
 E glutamate           7.3         19           2
 F phenylalanine       2.3          6           2
 G glycine             5.7         15           2
 H histidine           5.4         14           1
 I isoleucine          4.6         12           1
 K lysine              5.4         14           2
 L leucine             8.4         22           2
 M methionine          3.1          8           1
 N asparagine          4.6         12           2
 P proline             2.7          7           1
 Q glutamine           6.5         17           2
 R arginine            6.5         17           2
 S serine              3.4          9           1
 T threonine           4.2         11           1
 V valine              3.4          9           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger and CHY zinc finger domain containing 1 ... 
RCHY1                 0.951   ring finger and CHY zinc finger domain containing 1 ...
RCHY1                 0.684   ring finger and CHY zinc finger domain containing 1 ...
RNF149                0.051   ring finger protein 149 
MLL3                  0.038   myeloid/lymphoid or mixed-lineage leukemia 3 
TRIM32                0.036   tripartite motif-containing 32 
TRIM32                0.036   tripartite motif-containing 32 
RNF150                0.034   ring finger protein 150 
RNF38                 0.033   ring finger protein 38 isoform 2 
RNF38                 0.033   ring finger protein 38 isoform 2 
RNF38                 0.033   ring finger protein 38 isoform 3 
RNF38                 0.033   ring finger protein 38 isoform 2 
RNF38                 0.033   ring finger protein 38 isoform 1 
RNF44                 0.033   ring finger protein 44 
RNF130                0.033   ring finger protein 130 
AMFR                  0.033   autocrine motility factor receptor 
RNF24                 0.031   ring finger protein 24 isoform 2 
RNF24                 0.031   ring finger protein 24 isoform 1 
RNF24                 0.031   ring finger protein 24 isoform 1 
ZNRF3                 0.031   zinc and ring finger 3 
ZNF789                0.031   zinc finger protein 789 isoform 1 
RNF128                0.029   ring finger protein 128 isoform 1 
RNF128                0.029   ring finger protein 128 isoform 2 
RNF111                0.027   ring finger protein 111 
RNF122                0.027   ring finger protein 122 
RNF165                0.027   ring finger protein 165 
RNF6                  0.025   ring finger protein 6 
RNF6                  0.025   ring finger protein 6 
RNF6                  0.025   ring finger protein 6 
RLIM                  0.025   ring finger protein, LIM domain interacting 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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