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Search of human proteins with 58331105
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58331105 hypothetical protein LOC83932 isoform a [Homo
sapiens]
(489 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58331105 hypothetical protein LOC83932 isoform a [Homo sapiens] 1005 0.0
gi|58331107 hypothetical protein LOC83932 isoform b [Homo sapiens] 516 e-146
gi|14550405 postreplication repair protein hRAD18p [Homo sapiens] 43 6e-04
gi|154689866 hypothetical protein LOC9778 [Homo sapiens] 39 0.014
gi|154689751 hypothetical protein LOC9778 [Homo sapiens] 39 0.014
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 35 0.20
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 35 0.20
gi|24429588 zinc finger protein 532 [Homo sapiens] 34 0.26
gi|14149740 oxysterol-binding protein-like protein 5 isoform a [... 34 0.34
gi|221136766 oxysterol-binding protein-like protein 5 isoform b ... 34 0.34
gi|22035609 oxysterol-binding protein-like protein 5 isoform b [... 34 0.34
gi|55749758 DIP2 disco-interacting protein 2 homolog B [Homo sap... 34 0.34
gi|7705344 DNA-directed DNA polymerase kappa [Homo sapiens] 33 0.77
gi|42476130 ubiquitin interaction motif containing 1 [Homo sapiens] 33 0.77
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 33 0.77
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 32 1.3
gi|167234419 thyroid hormone receptor associated protein 3 [Homo... 32 1.3
gi|67010025 Sp4 transcription factor [Homo sapiens] 31 2.2
gi|90669307 cyclin B3 isoform 3 [Homo sapiens] 31 2.2
gi|163310749 LIM and calponin homology domains 1 isoform e [Homo... 31 2.2
gi|163310747 LIM and calponin homology domains 1 isoform d [Homo... 31 2.2
gi|163310745 LIM and calponin homology domains 1 isoform c [Homo... 31 2.2
gi|163310743 LIM and calponin homology domains 1 isoform b [Homo... 31 2.2
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 31 2.2
gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens] 31 2.2
gi|38569430 activating transcription factor 7 interacting protei... 31 2.2
gi|54792088 hypothetical protein LOC23506 [Homo sapiens] 31 2.2
gi|61676089 hypothetical protein LOC222584 [Homo sapiens] 31 2.9
gi|188219762 denticleless homolog [Homo sapiens] 30 3.8
gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo sa... 30 3.8
>gi|58331105 hypothetical protein LOC83932 isoform a [Homo sapiens]
Length = 489
Score = 1005 bits (2598), Expect = 0.0
Identities = 489/489 (100%), Positives = 489/489 (100%)
Query: 1 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60
MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
Sbjct: 1 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60
Query: 61 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120
LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
Sbjct: 61 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120
Query: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180
TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
Sbjct: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180
Query: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD 240
GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD
Sbjct: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENKD 240
Query: 241 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI 300
KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI
Sbjct: 241 KPNRGEAQLVIPFSGKGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKI 300
Query: 301 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP 360
KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP
Sbjct: 301 KVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIP 360
Query: 361 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF 420
KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF
Sbjct: 361 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF 420
Query: 421 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS 480
FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS
Sbjct: 421 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS 480
Query: 481 IKVKSEESL 489
IKVKSEESL
Sbjct: 481 IKVKSEESL 489
>gi|58331107 hypothetical protein LOC83932 isoform b [Homo sapiens]
Length = 250
Score = 516 bits (1328), Expect = e-146
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60
MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ
Sbjct: 1 MDDDLMLALRLQEEWNLQEAERDHAQESLSLVDASWELVDPTPDLQALFVQFNDQFFWGQ 60
Query: 61 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120
LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV
Sbjct: 61 LEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKLRPRKDLVETLLHEMIHAYLFV 120
Query: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180
TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY
Sbjct: 121 TNNDKDREGHGPEFCKHMHRINSLTGANITVYHTFHDEVDEYRRHWWRCNGPCQHRPPYY 180
Query: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENK 239
GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENK
Sbjct: 181 GYVKRATNREPSAHDYWWAEHQKTCGGTYIKIKEPENYSKKGKGKAKLGKEPVLAAENK 239
>gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]
Length = 495
Score = 43.1 bits (100), Expect = 6e-04
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 360 PKNSVSSSSQRRVS-------SSKISLRNSSKVTESASVMPSQDVSGSEDTF---PNKRP 409
P S +SSS + ++ +S+ SL+ S++ ++ + +++SGS NK
Sbjct: 100 PAKSPASSSSKNLAVKVYTPVASRQSLKQGSRLMDNFLI---REMSGSTSELLIKENKSK 156
Query: 410 RLEDKTVFDNFFIKKEQ-IKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQI 468
K K+ + ++ DP + S+S+ Q V+CPVC + ES I
Sbjct: 157 FSPQKEASPAAKTKETRSVEEIAPDPSEAKRPEPPSTSTLKQVTKVDCPVCGVNIPESHI 216
Query: 469 NEHLDWCLEGDSIKVKSEESL 489
N+HLD CL + K S+
Sbjct: 217 NKHLDSCLSREEKKESLRSSV 237
>gi|154689866 hypothetical protein LOC9778 [Homo sapiens]
Length = 1395
Score = 38.5 bits (88), Expect = 0.014
Identities = 60/266 (22%), Positives = 100/266 (37%), Gaps = 37/266 (13%)
Query: 231 EPVLAAENKDKPNRGEAQLVIPFSGKGY--VLGETSN--LPSPGKLITSHAINKTQDLLN 286
+P ++ E D+P GE L FS + +LG N + PG + + + +
Sbjct: 991 KPFVSFEQNDQPKSGENGLNKGFSFIFHEDLLGACGNFQVEDPGLEYSFSSFDLSNPFSQ 1050
Query: 287 QNHSANAVRPNSKIKVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGV 346
H ++ FE G + S P + + PR+ ++ +R +
Sbjct: 1051 VLH----------VECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAI 1100
Query: 347 NGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPN 406
SPR + + S S+ S K E+ +PSQ V ED +
Sbjct: 1101 RISPRTHFRPISASELSPGGGSESEFESEK---------DEANIPIPSQ-VDIFEDPQAD 1150
Query: 407 KRPRLEDKTVFDNFFIKKE--------QIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPV 458
+P ED +++ K E ++K SG + +AQ S S +S +
Sbjct: 1151 LKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEK-----SAQTSLDSQEESTGILSVG 1205
Query: 459 CQNEVLESQINEHLDWCLEGDSIKVK 484
QN+ LE +NE L+ LE K
Sbjct: 1206 KQNQCLECSMNESLEIDLESSEANCK 1231
>gi|154689751 hypothetical protein LOC9778 [Homo sapiens]
Length = 1395
Score = 38.5 bits (88), Expect = 0.014
Identities = 60/266 (22%), Positives = 100/266 (37%), Gaps = 37/266 (13%)
Query: 231 EPVLAAENKDKPNRGEAQLVIPFSGKGY--VLGETSN--LPSPGKLITSHAINKTQDLLN 286
+P ++ E D+P GE L FS + +LG N + PG + + + +
Sbjct: 991 KPFVSFEQNDQPKSGENGLNKGFSFIFHEDLLGACGNFQVEDPGLEYSFSSFDLSNPFSQ 1050
Query: 287 QNHSANAVRPNSKIKVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGV 346
H ++ FE G + S P + + PR+ ++ +R +
Sbjct: 1051 VLH----------VECSFEPEGIASFSPSFKPKSILCSDSDSEVFHPRICGVDRTQYRAI 1100
Query: 347 NGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPN 406
SPR + + S S+ S K E+ +PSQ V ED +
Sbjct: 1101 RISPRTHFRPISASELSPGGGSESEFESEK---------DEANIPIPSQ-VDIFEDPQAD 1150
Query: 407 KRPRLEDKTVFDNFFIKKE--------QIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPV 458
+P ED +++ K E ++K SG + +AQ S S +S +
Sbjct: 1151 LKPLEEDAEKEGHYYGKSELESGKFLPRLKKSGMEK-----SAQTSLDSQEESTGILSVG 1205
Query: 459 CQNEVLESQINEHLDWCLEGDSIKVK 484
QN+ LE +NE L+ LE K
Sbjct: 1206 KQNQCLECSMNESLEIDLESSEANCK 1231
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 34.7 bits (78), Expect = 0.20
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 449 SQSKMVNCPVCQNEVLESQINEHLDWCL 476
SQ V CPVCQ + + IN HLD CL
Sbjct: 13 SQLHQVQCPVCQQMMPAAHINSHLDRCL 40
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 34.7 bits (78), Expect = 0.20
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 449 SQSKMVNCPVCQNEVLESQINEHLDWCL 476
SQ V CPVCQ + + IN HLD CL
Sbjct: 13 SQLHQVQCPVCQQMMPAAHINSHLDRCL 40
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 34.3 bits (77), Expect = 0.26
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 19/134 (14%)
Query: 321 SNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLR 380
S+ NVL+ P+ + KA G N S T GN+ KN + +R +S I+L
Sbjct: 157 SSFRSNVLTGSAPQQDYDKLKALGGENSSKTGLSTSGNVEKN---KAVKRETEASSINL- 212
Query: 381 NSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTT 440
SV V +ED ++ + V D ++ S ND +
Sbjct: 213 ---------SVYEPFKVRKAEDKLKESSDKVLENRVLDG------KLSSEKNDTSLPSVA 257
Query: 441 AQNSSSSSSQSKMV 454
+ SSS S +
Sbjct: 258 PSKTKSSSKLSSCI 271
>gi|14149740 oxysterol-binding protein-like protein 5 isoform a
[Homo sapiens]
Length = 879
Score = 33.9 bits (76), Expect = 0.34
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 388 SASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQNSS-- 445
SA+V P QD+ FP LE+ D KS +P+ S T Q+ S
Sbjct: 278 SATVHPDQDL------FPLNGSSLENDAFSD---------KSERENPEESDTETQDHSRK 322
Query: 446 --SSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDSIKVKSEES 488
S S QS+ PV + Q+ E L E ++ SEE+
Sbjct: 323 TESGSDQSETPGAPVRRGTTYVEQVQEELGELGEASQVETVSEEN 367
>gi|221136766 oxysterol-binding protein-like protein 5 isoform b
[Homo sapiens]
Length = 811
Score = 33.9 bits (76), Expect = 0.34
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 388 SASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQNSS-- 445
SA+V P QD+ FP LE+ D KS +P+ S T Q+ S
Sbjct: 210 SATVHPDQDL------FPLNGSSLENDAFSD---------KSERENPEESDTETQDHSRK 254
Query: 446 --SSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDSIKVKSEES 488
S S QS+ PV + Q+ E L E ++ SEE+
Sbjct: 255 TESGSDQSETPGAPVRRGTTYVEQVQEELGELGEASQVETVSEEN 299
>gi|22035609 oxysterol-binding protein-like protein 5 isoform b
[Homo sapiens]
Length = 811
Score = 33.9 bits (76), Expect = 0.34
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 388 SASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQNSS-- 445
SA+V P QD+ FP LE+ D KS +P+ S T Q+ S
Sbjct: 210 SATVHPDQDL------FPLNGSSLENDAFSD---------KSERENPEESDTETQDHSRK 254
Query: 446 --SSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDSIKVKSEES 488
S S QS+ PV + Q+ E L E ++ SEE+
Sbjct: 255 TESGSDQSETPGAPVRRGTTYVEQVQEELGELGEASQVETVSEEN 299
>gi|55749758 DIP2 disco-interacting protein 2 homolog B [Homo
sapiens]
Length = 1576
Score = 33.9 bits (76), Expect = 0.34
Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 268 SPGKLITSHAINKTQDLLNQNHSANAVRPNSKIKVKFEQNGSSKNSHLVSPAVSNSHQNV 327
SP T A+ K +L NQ + +A + ++ K ++G +++ S + + Q
Sbjct: 53 SPQTQETDSAVQK--ELRNQTPAPSAAQTSAPSKYHRTRSGGARDERYRSDIHTEAVQAA 110
Query: 328 LSNYFPRVSFANQKAFRGVN--GSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNSSKV 385
L+ + + R SP + T + S S RR ++ +L+ S +
Sbjct: 111 LAKHKEQKMALPMPTKRRSTFVQSPADACTPPDTSSASEDEGSLRRQAALSAALQQSLQN 170
Query: 386 TES---ASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQ 442
ES S+ S S + T + + ++ D F +I++ P +TTT+
Sbjct: 171 AESWINRSIQGSSTSSSASSTLSHGEVKGTSGSLADVF--ANTRIENFSAPPDVTTTTSS 228
Query: 443 NSSSSSSQSKMVNCP 457
+SSSSS + ++ P
Sbjct: 229 SSSSSSIRPANIDLP 243
>gi|7705344 DNA-directed DNA polymerase kappa [Homo sapiens]
Length = 870
Score = 32.7 bits (73), Expect = 0.77
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 445 SSSSSQSKMVNCPVC---QNEVLESQINEHLDWCLEGDSI 481
S +S +++ CPVC Q + +N+H+D CL+G SI
Sbjct: 613 SENSDDCQILTCPVCFRAQGCISLEALNKHVDECLDGPSI 652
>gi|42476130 ubiquitin interaction motif containing 1 [Homo sapiens]
Length = 719
Score = 32.7 bits (73), Expect = 0.77
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 362 NSVSSSSQRRVSSSKISL-RNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF 420
NSV +S +SK SL E +V P +S SE + + + D
Sbjct: 414 NSVPASQSVAALTSKRSLVLMPESSAEEITVCPETQLSSSETFDLEREVSPGSRDILDGV 473
Query: 421 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWC---LE 477
I K GN A ++ SSS+Q V+CP+C ++I H +C +E
Sbjct: 474 RIIMAD-KEVGNKEDAEKEVAISTFSSSNQ---VSCPLCDQCFPPTKIERHAMYCNGLME 529
Query: 478 GDSIKVKSEE 487
D++ + ++
Sbjct: 530 EDTVLTRRQK 539
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 32.7 bits (73), Expect = 0.77
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 360 PKNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDN 419
PK +S+ + SS++ S + S+ + P+ V P+K P+ E +
Sbjct: 782 PKTEDKNSAGHKPSSNRESSKQSAAKEKDLLPSPAGPV-------PSKDPKTEHGSR-KR 833
Query: 420 FFIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSK 452
+ +KSS N K ++ +++NSSS+S Q K
Sbjct: 834 TISQSSSLKSSSNSNKETSGSSKNSSSTSKQKK 866
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.0 bits (71), Expect = 1.3
Identities = 37/131 (28%), Positives = 54/131 (41%), Gaps = 4/131 (3%)
Query: 321 SNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLR 380
+ H +LS P V ++ G+ + S P SSS SSS S
Sbjct: 2487 AGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSS 2546
Query: 381 NSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTT 440
+SS + S+S S D GS + P +P + K V KE ++ G P+ +
Sbjct: 2547 SSSSSSSSSSGSSSSDSEGS--SLP-VQPEVALKRVPSPTPAPKEAVR-EGRPPEPTPAK 2602
Query: 441 AQNSSSSSSQS 451
+ SSSSS S
Sbjct: 2603 RKRRSSSSSSS 2613
>gi|167234419 thyroid hormone receptor associated protein 3 [Homo
sapiens]
Length = 955
Score = 32.0 bits (71), Expect = 1.3
Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 11/145 (7%)
Query: 325 QNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNSSK 384
QN Y PR + ++ + + SPR N K SSS + R SSS S N S+
Sbjct: 112 QNYRQAYSPRRGRSRSRSPKRRSPSPRSRSHSRNSDK---SSSDRSRRSSSSRSSSNHSR 168
Query: 385 VTESASVMPSQDVSGSEDTFP------NKRPRLEDKTVFDNFF--IKKEQIKSSGNDPKY 436
V S + S S+D+ P N+ +++T K + D Y
Sbjct: 169 VESSKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKEQTFSGGTSQDTKASESSKPWPDATY 228
Query: 437 STTTAQNSSSSSSQSKMVNCPVCQN 461
T +A +S+ S S P ++
Sbjct: 229 GTGSASRASAVSELSPRERSPALKS 253
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 31.2 bits (69), Expect = 2.2
Identities = 46/201 (22%), Positives = 72/201 (35%), Gaps = 19/201 (9%)
Query: 211 KIKEPENYSKKGKGKAKLGKEP----VLAAENKDKPNRGEAQ-------LVIPFSGKGYV 259
K EPEN +KK K +P +LAA GE Q ++ P G
Sbjct: 24 KTSEPENNNKKPKTSGSQDSQPSPLALLAATCSKIGTPGENQATGQQQIIIDPSQG---- 79
Query: 260 LGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNSKIKVKFEQNGSSKNSHLVSPA 319
L + N P +L+T+ L+ A+ N + SS N+ SP
Sbjct: 80 LVQLQNQPQQLELVTTQLAGNAWQLVASTPPASK-ENNVSQPASSSSSSSSSNNGSASPT 138
Query: 320 VSNSHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVG-NIPKNSVSSSSQRRVSS--SK 376
+ S + F + N P++ G I N SSSS + +
Sbjct: 139 KTKSGNSSTPGQFQVIQVQNPSGSVQYQVIPQLQTVEGQQIQINPTSSSSLQDLQGQIQL 198
Query: 377 ISLRNSSKVTESASVMPSQDV 397
IS N+ + +A+ S ++
Sbjct: 199 ISAGNNQAILTAANRTASGNI 219
>gi|90669307 cyclin B3 isoform 3 [Homo sapiens]
Length = 1395
Score = 31.2 bits (69), Expect = 2.2
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 376 KISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPK 435
K+S N + + E + + +G E +F E T ++ F+K + G P
Sbjct: 917 KMSTINEAVLFEDMIALNEKPTTGKELSFKEPLALQESPTYKEDTFLKTLLVPQVGTSPN 976
Query: 436 YSTTTAQNSSSSSSQSKMVN 455
S+T ++ +S SS + M +
Sbjct: 977 VSSTAPESITSKSSIATMTS 996
Score = 30.8 bits (68), Expect = 2.9
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 346 VNGSPRISVTVGNIPKNSVSSSSQRRVSS-SKISLRNSSKVTESASVMPSQDVSGSEDTF 404
V SP +S T P++ S SS ++S K N + + E + + +G E +F
Sbjct: 971 VGTSPNVSSTA---PESITSKSSIATMTSVGKSGTINEAFLFEDMITLNEKPTTGKELSF 1027
Query: 405 PNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVN 455
E T ++ F++ I G P +TT ++ + SS + M +
Sbjct: 1028 KEPLALQESPTCKEDTFLETFLIPQIGTSPYVFSTTPESITEKSSIATMTS 1078
>gi|163310749 LIM and calponin homology domains 1 isoform e [Homo
sapiens]
Length = 890
Score = 31.2 bits (69), Expect = 2.2
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 268 SPGKLITSHAINK-TQDLLNQNHSANAVRPNSKIKVKFEQNGSS----KNSHLVSPAVSN 322
SP K +T A+ T +Q ++ V K+ K NG + + P V+
Sbjct: 357 SPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAP 416
Query: 323 SHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNS 382
+H S F V+ V+GSP + + N S +I+++
Sbjct: 417 AHSLTKSQMFEGVA--------RVHGSP-LELKQDN--------------GSIEINIKKP 453
Query: 383 SKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQ 442
+ V P + + +E T PN + EDK D +K I+ + ++P++ TTT
Sbjct: 454 NSV-------PQELAATTEKTEPNSQ---EDKN--DGGKSRKGNIELASSEPQHFTTTVT 501
Query: 443 NSSSSSSQSKMVNCPVCQNEVLESQ 467
S + + + + P +N+V E +
Sbjct: 502 RCSPTVAFVEFPSSPQLKNDVSEEK 526
>gi|163310747 LIM and calponin homology domains 1 isoform d [Homo
sapiens]
Length = 902
Score = 31.2 bits (69), Expect = 2.2
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 268 SPGKLITSHAINK-TQDLLNQNHSANAVRPNSKIKVKFEQNGSS----KNSHLVSPAVSN 322
SP K +T A+ T +Q ++ V K+ K NG + + P V+
Sbjct: 369 SPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAP 428
Query: 323 SHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNS 382
+H S F V+ V+GSP + + N S +I+++
Sbjct: 429 AHSLTKSQMFEGVA--------RVHGSP-LELKQDN--------------GSIEINIKKP 465
Query: 383 SKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQ 442
+ V P + + +E T PN + EDK D +K I+ + ++P++ TTT
Sbjct: 466 NSV-------PQELAATTEKTEPNSQ---EDKN--DGGKSRKGNIELASSEPQHFTTTVT 513
Query: 443 NSSSSSSQSKMVNCPVCQNEVLESQ 467
S + + + + P +N+V E +
Sbjct: 514 RCSPTVAFVEFPSSPQLKNDVSEEK 538
>gi|163310745 LIM and calponin homology domains 1 isoform c [Homo
sapiens]
Length = 1056
Score = 31.2 bits (69), Expect = 2.2
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 268 SPGKLITSHAINK-TQDLLNQNHSANAVRPNSKIKVKFEQNGSS----KNSHLVSPAVSN 322
SP K +T A+ T +Q ++ V K+ K NG + + P V+
Sbjct: 523 SPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAP 582
Query: 323 SHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNS 382
+H S F V+ V+GSP + + N S +I+++
Sbjct: 583 AHSLTKSQMFEGVA--------RVHGSP-LELKQDN--------------GSIEINIKKP 619
Query: 383 SKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQ 442
+ V P + + +E T PN + EDK D +K I+ + ++P++ TTT
Sbjct: 620 NSV-------PQELAATTEKTEPNSQ---EDKN--DGGKSRKGNIELASSEPQHFTTTVT 667
Query: 443 NSSSSSSQSKMVNCPVCQNEVLESQ 467
S + + + + P +N+V E +
Sbjct: 668 RCSPTVAFVEFPSSPQLKNDVSEEK 692
>gi|163310743 LIM and calponin homology domains 1 isoform b [Homo
sapiens]
Length = 1057
Score = 31.2 bits (69), Expect = 2.2
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 268 SPGKLITSHAINK-TQDLLNQNHSANAVRPNSKIKVKFEQNGSS----KNSHLVSPAVSN 322
SP K +T A+ T +Q ++ V K+ K NG + + P V+
Sbjct: 523 SPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAP 582
Query: 323 SHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNS 382
+H S F V+ V+GSP + + N S +I+++
Sbjct: 583 AHSLTKSQMFEGVA--------RVHGSP-LELKQDN--------------GSIEINIKKP 619
Query: 383 SKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQ 442
+ V P + + +E T PN + EDK D +K I+ + ++P++ TTT
Sbjct: 620 NSV-------PQELAATTEKTEPNSQ---EDKN--DGGKSRKGNIELASSEPQHFTTTVT 667
Query: 443 NSSSSSSQSKMVNCPVCQNEVLESQ 467
S + + + + P +N+V E +
Sbjct: 668 RCSPTVAFVEFPSSPQLKNDVSEEK 692
>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
sapiens]
Length = 1083
Score = 31.2 bits (69), Expect = 2.2
Identities = 46/205 (22%), Positives = 83/205 (40%), Gaps = 40/205 (19%)
Query: 268 SPGKLITSHAINK-TQDLLNQNHSANAVRPNSKIKVKFEQNGSS----KNSHLVSPAVSN 322
SP K +T A+ T +Q ++ V K+ K NG + + P V+
Sbjct: 523 SPSKTVTPKAVPMLTPKPYSQPKNSQDVLKTFKVDGKVSVNGETVHREEEKERECPTVAP 582
Query: 323 SHQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNIPKNSVSSSSQRRVSSSKISLRNS 382
+H S F V+ V+GSP + + N S +I+++
Sbjct: 583 AHSLTKSQMFEGVA--------RVHGSP-LELKQDN--------------GSIEINIKKP 619
Query: 383 SKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQ 442
+ V P + + +E T PN + EDK D +K I+ + ++P++ TTT
Sbjct: 620 NSV-------PQELAATTEKTEPNSQ---EDKN--DGGKSRKGNIELASSEPQHFTTTVT 667
Query: 443 NSSSSSSQSKMVNCPVCQNEVLESQ 467
S + + + + P +N+V E +
Sbjct: 668 RCSPTVAFVEFPSSPQLKNDVSEEK 692
>gi|170016061 spectrin, beta, non-erythrocytic 5 [Homo sapiens]
Length = 3639
Score = 31.2 bits (69), Expect = 2.2
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 58 WGQLEAVEVKWSVRMTLCAGICSYEGKGGMCSIRLSEPLLKL 99
WGQLEA++ + +V++ +CS+ + G ++L + LL+L
Sbjct: 947 WGQLEALKREKAVQLAHSVEVCSFLQECGPTQVQLRDVLLQL 988
>gi|38569430 activating transcription factor 7 interacting protein 2
[Homo sapiens]
Length = 682
Score = 31.2 bits (69), Expect = 2.2
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 27/189 (14%)
Query: 292 NAVRPNSKIKVKFEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFANQKAFRGVNGSPR 351
N ++PN NG+SK V+NS +L V+ +K+ VN P
Sbjct: 384 NCLKPNM-----LSSNGASK--------VANSEAMILDKNLESVNSPIEKS--SVNYEPS 428
Query: 352 ISVTVGNIPKNSVSSSSQRRVSSSK------ISLRNSSKVTESAS--VMPSQDVSGSEDT 403
G+ K ++SS + VS S IS+ + + T S + SG+
Sbjct: 429 NPSEKGS-KKINLSSDQNKSVSESNNDDVMLISVESPNLTTPITSNPTDTRKITSGNSSN 487
Query: 404 FPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEV 463
PN K + + KE + + + S + + ++S+S+ P+ QN V
Sbjct: 488 SPNAEVMAVQKKLDSIIDLTKEGLSNCNTESPVSPLESHSKAASNSKE---TTPLAQNAV 544
Query: 464 LESQINEHL 472
+ EHL
Sbjct: 545 QVPESFEHL 553
>gi|54792088 hypothetical protein LOC23506 [Homo sapiens]
Length = 1079
Score = 31.2 bits (69), Expect = 2.2
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 378 SLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNFFIKKEQIKSSGNDPKYS 437
SLRNS K V+ + + GS + P+ + +T F N K+ + +DP S
Sbjct: 976 SLRNSPK----NEVLHTDIMKGSGEPQPDLQLTKSLETTFKNILELKKAGRQPQSDPTVS 1031
Query: 438 TTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDSI 481
+ + + S + NC LE I +H + +E DSI
Sbjct: 1032 GSVELDFPNFSPMASQENC-------LEKFIPDHSEGVVETDSI 1068
>gi|61676089 hypothetical protein LOC222584 [Homo sapiens]
Length = 1011
Score = 30.8 bits (68), Expect = 2.9
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 284 LLNQNHSANAVRPNSKIKVK----FEQNGSSKNSHLVSPAVSNSHQNVLSNYFPRVSFAN 339
LL+ N + SK +VK F + GS K L+S + +N+ N P
Sbjct: 743 LLDVNKEESNKELASKKEVKGSPSFLKKGSQKLRSLLS-LTPDKKENLSKNKAP------ 795
Query: 340 QKAFRGVNGSPRISVTVGNI---PKNS---VSSSSQRRVSSSKISLRNSSKVTESASVMP 393
AF + S V+ G PK S V SS +R+ SSS S + K E +V P
Sbjct: 796 --AFYRLCSSSDTLVSEGEENQKPKKSDTKVDSSPRRKHSSSSNSQGSIHKSKEDVTVSP 853
Query: 394 SQDVSGSEDTFPNKR 408
SQ+++ D NKR
Sbjct: 854 SQEINAPPD--ENKR 866
>gi|188219762 denticleless homolog [Homo sapiens]
Length = 730
Score = 30.4 bits (67), Expect = 3.8
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 361 KNSVSSSSQRRVSSSKISLRNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDKTVFDNF 420
+ SVSS S + SS K+S+RN VT + S P SE + R L +
Sbjct: 483 RGSVSSVSPKPPSSFKMSIRN--WVTRTPSSSPPITPPASETKIMSPRKALIPVSQ---- 536
Query: 421 FIKKEQIKSSGNDPKYSTTTAQNSSSSSSQSKMVNCPVCQNEVLESQINEHLDWCLEGDS 480
K Q ++ +S S + K V C E+ N HLD C +
Sbjct: 537 --KSSQAEACSESRNRVKRRLDSSCLESVKQKCVKSCNCVTELDGQVENLHLDLCCLAGN 594
Query: 481 IKVKSEESL 489
+ S++SL
Sbjct: 595 QEDLSKDSL 603
>gi|111154090 Rho GTPase activating protein 24 isoform 3 [Homo
sapiens]
Length = 653
Score = 30.4 bits (67), Expect = 3.8
Identities = 52/224 (23%), Positives = 84/224 (37%), Gaps = 27/224 (12%)
Query: 256 KGYVLGETSNLPSPGKLITSHAINKTQDLLNQNHSANAVRPNS------KIKVKFEQNGS 309
K + S + + G +S+A + N S A R +S K+ QNG+
Sbjct: 327 KNPAFNKGSGIVTNGSFSSSNAEGLEKTQTTPNGSLQARRSSSLKVSGTKMGTHSVQNGT 386
Query: 310 SKNSHLVSPAVSNS----HQNVLSNYFPRVSFANQKAFRGVNGSPRISVTVGNI------ 359
+ L S + N + + L N + + QK G G T N+
Sbjct: 387 VRMGILNSDTLGNPTNVRNMSWLPNGYVTLRDNKQKEQAGELGQHNRLSTYDNVHQQFSM 446
Query: 360 ----PKNSVSSSSQRRVSSSKISL-RNSSKVTESASVMPSQDVSGSEDTFPNKRPRLEDK 414
K S+ S++ SS +ISL NS+ S + P QD G P +D
Sbjct: 447 MNLDDKQSIDSATWS-TSSCEISLPENSNSCRSSTTTCPEQDFFGGNFEDPVLDGPPQDD 505
Query: 415 TVFDNFFIKKEQIKSSGNDPKYSTTTAQNS-----SSSSSQSKM 453
+ K +S G +T+++ NS +SSS+ S +
Sbjct: 506 LSHPRDYESKSDHRSVGGRSSRATSSSDNSETFVGNSSSNHSAL 549
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,457,509
Number of Sequences: 37866
Number of extensions: 891090
Number of successful extensions: 2461
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 2300
Number of HSP's gapped (non-prelim): 148
length of query: 489
length of database: 18,247,518
effective HSP length: 106
effective length of query: 383
effective length of database: 14,233,722
effective search space: 5451515526
effective search space used: 5451515526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.