Guide to the Human Genome
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Name: KIAA0232 Sequence: fasta or formatted (1395aa) NCBI GI: 154689751
Description:

hypothetical protein LOC9778

Not currently referenced in the text

Other entries for this name:
alt mRNA {1395aa} hypothetical protein LOC9778
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         65           2
 C cysteine            2.9         41           3
 D aspartate           5.4         75           2
 E glutamate          11.4        159           3
 F phenylalanine       3.7         52           1
 G glycine             6.7         93           3
 H histidine           1.9         26           1
 I isoleucine          3.7         52           1
 K lysine              6.5         91           3
 L leucine             8.0        112           3
 M methionine          1.5         21           1
 N asparagine          4.7         65           3
 P proline             4.7         65           2
 Q glutamine           3.9         55           2
 R arginine            3.4         48           2
 S serine             13.1        183           7
 T threonine           5.2         73           2
 V valine              4.7         65           3
 W tryptophan          1.3         18           2
 Y tyrosine            2.6         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9778 
KIAA0232              1.000   hypothetical protein LOC9778 
CIR1                  0.011   CBF1 interacting corepressor 
PNN                   0.010   pinin, desmosome associated protein 
NEFH                  0.009   neurofilament, heavy polypeptide 200kDa 
NOLC1                 0.008   nucleolar and coiled-body phosphoprotein 1 
SFRS4                 0.008   splicing factor, arginine/serine-rich 4 
TRDN                  0.007   triadin 
PRG4                  0.007   proteoglycan 4 isoform D 
PRG4                  0.007   proteoglycan 4 isoform C 
PRG4                  0.007   proteoglycan 4 isoform B 
PRG4                  0.007   proteoglycan 4 isoform A 
ZRANB2                0.007   zinc finger protein 265 isoform 1 
NKAPL                 0.007   NFKB activating protein-like 
SFRS12                0.007   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.007   splicing factor, arginine/serine-rich 12 isoform b [...
TOPORS                0.006   topoisomerase I binding, arginine/serine-rich 
FAM133B               0.006   hypothetical protein LOC257415 isoform 2 
FAM133B               0.006   hypothetical protein LOC257415 isoform 1 
LOC100133599          0.006   PREDICTED: hypothetical protein 
ACIN1                 0.006   apoptotic chromatin condensation inducer 1 
CWC22                 0.006   CWC22 spliceosome-associated protein homolog 
AFF4                  0.006   ALL1 fused gene from 5q31 
CDC2L5                0.006   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.006   cell division cycle 2-like 5 isoform 2 
CHD2                  0.006   chromodomain helicase DNA binding protein 2 isoform...
CHD2                  0.006   chromodomain helicase DNA binding protein 2 isoform...
SRRM2                 0.006   splicing coactivator subunit SRm300 
FAM133A               0.006   hypothetical protein LOC286499 
MLLT1                 0.006   myeloid/lymphoid or mixed-lineage leukemia (trithora...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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