Guide to the Human Genome
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Name: SLC10A5 Sequence: fasta or formatted (438aa) NCBI GI: 58219066
Description:

solute carrier family 10 (sodium/bile acid cotransporter family), member 5

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         23           1
 C cysteine            2.5         11           1
 D aspartate           2.3         10           1
 E glutamate           5.0         22           2
 F phenylalanine       6.8         30           2
 G glycine             5.0         22           5
 H histidine           0.9          4           1
 I isoleucine          9.6         42           2
 K lysine              6.4         28           2
 L leucine            16.4         72           5
 M methionine          3.2         14           2
 N asparagine          3.4         15           1
 P proline             4.3         19           1
 Q glutamine           3.0         13           1
 R arginine            3.2         14           1
 S serine              6.6         29           3
 T threonine           5.9         26           1
 V valine              8.0         35           2
 W tryptophan          0.5          2           1
 Y tyrosine            1.6          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 10 (sodium/bile acid cotranspo... 
SLC10A3               0.318   solute carrier family 10, member 3 isoform 1 
SLC10A3               0.318   solute carrier family 10, member 3 isoform 1 
SLC10A3               0.302   solute carrier family 10, member 3 isoform 2 
SLC10A2               0.152   solute carrier family 10 (sodium/bile acid cotranspor...
SLC10A4               0.134   solute carrier family 10, member 4 
SLC10A6               0.122   sodium-dependent organic anion transporter 
SLC10A1               0.105   solute carrier family 10, member 1 
OR10AG1               0.015   olfactory receptor, family 10, subfamily AG, member ...
DDX53                 0.009   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
OR8G2                 0.007   olfactory receptor, family 8, subfamily G, member 2 ...
SYCP1                 0.007   synaptonemal complex protein 1 
GPAA1                 0.006   glycosylphosphatidylinositol anchor attachment protei...
CASC5                 0.006   cancer susceptibility candidate 5 isoform 2 
CASC5                 0.006   cancer susceptibility candidate 5 isoform 1 
RNF139                0.006   ring finger protein 139 
PLEC1                 0.006   plectin 1 isoform 11 
PLEC1                 0.006   plectin 1 isoform 10 
PLEC1                 0.006   plectin 1 isoform 8 
PLEC1                 0.006   plectin 1 isoform 7 
PLEC1                 0.006   plectin 1 isoform 6 
PLEC1                 0.006   plectin 1 isoform 3 
PLEC1                 0.006   plectin 1 isoform 2 
PLEC1                 0.006   plectin 1 isoform 1 
PIGW                  0.006   phosphatidylinositol glycan, class W 
SLC9A11               0.005   solute carrier family 9, member 11 
GOLGA4                0.005   golgi autoantigen, golgin subfamily a, 4 
OR6K6                 0.005   olfactory receptor, family 6, subfamily K, member 6 ...
KIF20A                0.005   kinesin family member 20A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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