Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GPAA1 Sequence: fasta or formatted (621aa) NCBI GI: 4504079
Description:

glycosylphosphatidylinositol anchor attachment protein 1

Referenced in:

GPI Anchoring

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         70           2
 C cysteine            1.0          6           1
 D aspartate           2.4         15           1
 E glutamate           4.3         27           2
 F phenylalanine       4.2         26           2
 G glycine             8.4         52           2
 H histidine           2.7         17           2
 I isoleucine          1.8         11           1
 K lysine              2.1         13           2
 L leucine            19.3        120           3
 M methionine          2.4         15           1
 N asparagine          2.1         13           1
 P proline             5.5         34           2
 Q glutamine           4.5         28           1
 R arginine            5.0         31           3
 S serine              5.8         36           2
 T threonine           5.0         31           2
 V valine              7.4         46           2
 W tryptophan          1.9         12           1
 Y tyrosine            2.9         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycosylphosphatidylinositol anchor attachment protei... 
LOC100288570          0.185   PREDICTED: hypothetical protein XP_002342296 
CNNM3                 0.009   cyclin M3 isoform 2 
CNNM3                 0.009   cyclin M3 isoform 1 
SLC22A20              0.006   solute carrier family 22, member 20 
ZMYND15               0.005   zinc finger, MYND-type containing 15 isoform 1 [Hom...
ZMYND15               0.005   zinc finger, MYND-type containing 15 isoform 2 [Homo...
LOC389333             0.004   hypothetical protein LOC389333 
SLC10A5               0.004   solute carrier family 10 (sodium/bile acid cotranspo...
CNN2                  0.004   calponin 2 isoform b 
CNN2                  0.004   calponin 2 isoform a 
OR8S1                 0.004   olfactory receptor, family 8, subfamily S, member 1...
SCAP                  0.004   SREBF chaperone protein 
CPD                   0.004   carboxypeptidase D precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press