Guide to the Human Genome
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Name: SLC10A1 Sequence: fasta or formatted (349aa) NCBI GI: 4506971
Description:

solute carrier family 10, member 1

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         24           2
 C cysteine            4.0         14           1
 D aspartate           2.0          7           1
 E glutamate           2.9         10           2
 F phenylalanine       6.3         22           3
 G glycine             8.0         28           2
 H histidine           0.6          2           1
 I isoleucine          8.6         30           3
 K lysine              6.0         21           1
 L leucine            13.8         48           3
 M methionine          5.2         18           2
 N asparagine          3.4         12           1
 P proline             5.7         20           2
 Q glutamine           1.4          5           1
 R arginine            2.3          8           2
 S serine              6.0         21           2
 T threonine           6.3         22           2
 V valine              6.6         23           1
 W tryptophan          0.6          2           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 10, member 1 
SLC10A4               0.298   solute carrier family 10, member 4 
SLC10A2               0.273   solute carrier family 10 (sodium/bile acid cotranspor...
SLC10A6               0.273   sodium-dependent organic anion transporter 
SLC10A3               0.154   solute carrier family 10, member 3 isoform 1 
SLC10A3               0.154   solute carrier family 10, member 3 isoform 2 
SLC10A3               0.154   solute carrier family 10, member 3 isoform 1 
SLC10A5               0.127   solute carrier family 10 (sodium/bile acid cotranspo...
BMPR1A                0.012   bone morphogenetic protein receptor, type IA precurs...
OR10H3                0.010   olfactory receptor, family 10, subfamily H, member 3 ...
OR10H4                0.009   olfactory receptor, family 10, subfamily H, member 4...
LOC401399             0.009   hypothetical protein LOC401399 
SLCO6A1               0.007   solute carrier organic anion transporter family, mem...
NHEDC2                0.007   Na+/H+ exchanger domain containing 2 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
SLC29A1               0.006   equilibrative nucleoside transporter 1 
PODXL                 0.006   podocalyxin-like isoform 2 precursor 
PODXL                 0.006   podocalyxin-like isoform 1 precursor 
LAMA5                 0.004   laminin alpha 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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