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Search of human proteins with 58219030
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|58219030 hypothetical protein LOC399726 [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|58219030 hypothetical protein LOC399726 [Homo sapiens] 293 2e-80
gi|239754748 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|188497689 chromatin licensing and DNA replication factor 1 [H... 37 0.005
gi|188536004 zinc finger protein 469 [Homo sapiens] 36 0.008
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 36 0.011
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 36 0.011
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 36 0.011
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 35 0.014
gi|110815800 WD repeat domain 32 [Homo sapiens] 35 0.025
gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens] 34 0.042
gi|239757272 PREDICTED: hypothetical protein [Homo sapiens] 33 0.055
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens] 33 0.055
gi|239751775 PREDICTED: hypothetical protein [Homo sapiens] 33 0.055
gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo ... 33 0.055
gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo ... 33 0.055
gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo ... 33 0.055
gi|195947369 junction-mediating and regulatory protein [Homo sap... 33 0.055
gi|42734395 zinc finger protein 710 [Homo sapiens] 33 0.072
gi|134142824 forkhead box D2 [Homo sapiens] 33 0.094
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 33 0.094
gi|223972612 Crm, cramped-like [Homo sapiens] 32 0.12
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 32 0.12
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens] 32 0.12
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 32 0.12
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 32 0.12
gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo ... 32 0.16
gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo ... 32 0.16
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 32 0.16
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 32 0.16
>gi|58219030 hypothetical protein LOC399726 [Homo sapiens]
Length = 136
Score = 293 bits (751), Expect = 2e-80
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MQSREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASA 60
MQSREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASA
Sbjct: 1 MQSREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASA 60
Query: 61 AAARTRLLRWHHRVPSPRATRSPGSIRRTSPCSGGPDRPERPECADACCYLLDPFTLPLI 120
AAARTRLLRWHHRVPSPRATRSPGSIRRTSPCSGGPDRPERPECADACCYLLDPFTLPLI
Sbjct: 61 AAARTRLLRWHHRVPSPRATRSPGSIRRTSPCSGGPDRPERPECADACCYLLDPFTLPLI 120
Query: 121 QDFFRGCAASDFDRRD 136
QDFFRGCAASDFDRRD
Sbjct: 121 QDFFRGCAASDFDRRD 136
>gi|239754748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 16 RGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVP 75
RGW+ P + DR PGA GA T +PL++P L R P
Sbjct: 55 RGWKVGRRPNLTCDREPGARPEVLLVGARRCTPACKPLRLPELLPT------LGTQPRSP 108
Query: 76 SPRATRSPGSIRRTSPCSGGPDRPERPECA-DACC 109
S R P S RR P S P P + A ACC
Sbjct: 109 STGPDRVPRSSRRLPPESRRPGGPAKTHPARSACC 143
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/108 (31%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 4 REPSGWRTAERRRGWRC--RGVPTPSGDRGPGAAR-----PAARGGAGETTGQQRPLQVP 56
R+P R A R G R P P+ PG+ R PAA G G T +
Sbjct: 36 RDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAGGLRGPWTAAPGRQRAD 95
Query: 57 GASAAAARTRLLRWHHRVPSPRATRSPG--SIRRTSPCSGGPDRPERP 102
+AAA R W R+P A +PG ++R P P+RP P
Sbjct: 96 EGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPPPPPPPPERPRLP 143
>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
sapiens]
Length = 546
Score = 37.0 bits (84), Expect = 0.005
Identities = 35/97 (36%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 14 RRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQ---RPLQVPGASAA--AARTRLL 68
RRR R P R P ARPA R A T+G + RP PG A AR RL
Sbjct: 12 RRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71
Query: 69 RWHHRVPSPR--------ATRSPG-SIRRTSPCSGGP 96
V SP A SPG I++++P +G P
Sbjct: 72 LSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQP 108
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 36.2 bits (82), Expect = 0.008
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 3 SREPSGWRTAERRRGWRCRGVPTPSGDRGP-GAARPAARGGAGETTGQQRPLQVPGASAA 61
SR P+ R R + C P +G++GP G+ P + GE++ +++ QVPG
Sbjct: 3744 SRSPAPERLPARAQAKSCTKGPREAGEQGPHGSLGPKEK---GESSTKRKKGQVPG---- 3796
Query: 62 AARTRLLRWHHRVPS--------PRATRSPGSIRRTSPCSGGPDRPERP 102
AR+ + R PS PR +P + T P ++P P
Sbjct: 3797 PARSESVGSFGRAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKPRPP 3845
Score = 27.7 bits (60), Expect = 3.0
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 34/112 (30%)
Query: 28 GDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATR---SPG 84
G R PGA AR G ++R + +PG++ R P PR + S G
Sbjct: 3424 GVRRPGAPGQKARALEGTLPSKRRRVAMPGSAPGPGEDR--------PPPRGSSPILSEG 3475
Query: 85 SIR---------RTSPCSGGPDRPERPECADACCYLLDPFTLPLIQDFFRGC 127
S+ S G P+ ERP +DP T P+ RGC
Sbjct: 3476 SLPALLHLCSEVAPSTTKGWPETLERP---------VDPVTHPI-----RGC 3513
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 35.8 bits (81), Expect = 0.011
Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 3 SREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPA--------ARGGAGETTGQQRPLQ 54
S EP+ AE+R G R + P P+ PG RP A GG G TG + +
Sbjct: 13 SAEPTD---AEKRGGARAKATP-PAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPR 68
Query: 55 VPGASAAAARTRLLRWHHRVPSPRATR--SPGSIRRTSPCSGGPDRP---------ERPE 103
+ + AAA VP+PR R PG++ + G P P PE
Sbjct: 69 LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPE 128
Query: 104 CADACCYL 111
A A C L
Sbjct: 129 GALASCGL 136
Score = 27.7 bits (60), Expect = 3.0
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 7 SGWRTAERRRGWRCRGVPT----PSGDRGPGAARPAARGGAGETTGQQR-PLQVPGASAA 61
+GW + WR G P + AR R G G + P++ PG + A
Sbjct: 138 AGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA 197
Query: 62 AARTRLLRWHHRVPSPRATRSP 83
A W + RSP
Sbjct: 198 AVAEETPDWAPELCPSSEARSP 219
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 35.8 bits (81), Expect = 0.011
Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 3 SREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPA--------ARGGAGETTGQQRPLQ 54
S EP+ AE+R G R + P P+ PG RP A GG G TG + +
Sbjct: 7 SAEPTD---AEKRGGARAKATP-PAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPR 62
Query: 55 VPGASAAAARTRLLRWHHRVPSPRATR--SPGSIRRTSPCSGGPDRP---------ERPE 103
+ + AAA VP+PR R PG++ + G P P PE
Sbjct: 63 LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPE 122
Query: 104 CADACCYL 111
A A C L
Sbjct: 123 GALASCGL 130
Score = 27.7 bits (60), Expect = 3.0
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 7 SGWRTAERRRGWRCRGVPT----PSGDRGPGAARPAARGGAGETTGQQR-PLQVPGASAA 61
+GW + WR G P + AR R G G + P++ PG + A
Sbjct: 132 AGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA 191
Query: 62 AARTRLLRWHHRVPSPRATRSP 83
A W + RSP
Sbjct: 192 AVAEETPDWAPELCPSSEARSP 213
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 35.8 bits (81), Expect = 0.011
Identities = 39/128 (30%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 3 SREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPA--------ARGGAGETTGQQRPLQ 54
S EP+ AE+R G R + P P+ PG RP A GG G TG + +
Sbjct: 7 SAEPTD---AEKRGGARAKATP-PAPRPRPGGFRPPLQRARCYRAAGGRGRETGNAQGPR 62
Query: 55 VPGASAAAARTRLLRWHHRVPSPRATR--SPGSIRRTSPCSGGPDRP---------ERPE 103
+ + AAA VP+PR R PG++ + G P P PE
Sbjct: 63 LALQARAAAPAFPAASRRSVPAPRGRRLLLPGAVAACAVSDGQPLSPPLRQPRPAARAPE 122
Query: 104 CADACCYL 111
A A C L
Sbjct: 123 GALASCGL 130
Score = 28.5 bits (62), Expect = 1.8
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 7 SGWRTAERRRGWRCRGVPT----PSGDRGPGAARPAARGGAGETTGQQR-PLQVPGASAA 61
+GW + WR G P + AR R G G + P++ PG + A
Sbjct: 132 AGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPERSGPARRPGPECVPMKAPGLAQA 191
Query: 62 AARTRLLRWHHRV-PSPRATRSP 83
A W + PSP +RSP
Sbjct: 192 AVAEETPDWAPELCPSPE-SRSP 213
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 35.4 bits (80), Expect = 0.014
Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 10 RTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGAS-------AAA 62
RT +RRG R + R PG+ R AA G + G +RP PGA AAA
Sbjct: 121 RTEHQRRGI-LRPLAEREERRVPGSTRAAALPGGRDKPGPRRPRAAPGARSGAAASVAAA 179
Query: 63 ARTRLLRWHHRVPSPRA-TRSPGSIRR 88
TRL + + P P A R G+IR+
Sbjct: 180 GGTRLAQ---QAPFPAARCRRRGAIRK 203
>gi|110815800 WD repeat domain 32 [Homo sapiens]
Length = 559
Score = 34.7 bits (78), Expect = 0.025
Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 12/85 (14%)
Query: 24 PTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATRSP 83
P G G GA P G TG PL PGA A H P R+ R P
Sbjct: 9 PGGDGSAGAGAEEPTPHEGQAAATGPPSPLH-PGADAT----------HPPPPARSPRRP 57
Query: 84 GSIRRT-SPCSGGPDRPERPECADA 107
G+ + +P SG P PE + A
Sbjct: 58 GAPSLSPAPRSGELGLPGAPESSTA 82
>gi|122937382 Fas (TNFRSF6) binding factor 1 [Homo sapiens]
Length = 1133
Score = 33.9 bits (76), Expect = 0.042
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Query: 38 AARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATRSPGSIRRTSP--CSGG 95
AA GG+ TT ++RP PG S + SP+ +PG + T P C
Sbjct: 472 AAAGGSSGTTARERPCVRPGVSGSPVTQNHAASALPTGSPKRGTAPGDLSATEPATCFPS 531
Query: 96 PDRPERP 102
+P P
Sbjct: 532 TQKPTEP 538
>gi|239757272 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 33.5 bits (75), Expect = 0.055
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 9 WRTAERRRGWRCRGVPTPSGD---RGPGAARPAARGGAGETTGQQRPLQVPGASAAAART 65
W + RRR RG P+G GPG+ PA GG ET + G + R
Sbjct: 154 WLASSRRR---IRGTGVPAGFCHLDGPGSRVPAGAGGGAETAAASSGGGITGEGRSKVRG 210
Query: 66 RLLRWHHRVPSPRATRSPGSI 86
R+ R T SPG +
Sbjct: 211 RV---EGEAWGSRGTMSPGGV 228
>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
Length = 410
Score = 33.5 bits (75), Expect = 0.055
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 18 WRCRGVPTPSGDRGPGAARPA-ARGGAGETTGQ-QRPLQVPGASAAAARTRLLRWHHRVP 75
W G +G RG GAARPA R G+ + G+ RP + + A+ R H + P
Sbjct: 49 WGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGEPYRPEEDSRMTPASPEARTSPVHPKFP 108
Query: 76 S-PRATRSPGSIRRTSPCSGGP 96
P + +PG SP + GP
Sbjct: 109 KIPETSVAPG-----SPATAGP 125
>gi|239751775 PREDICTED: hypothetical protein [Homo sapiens]
Length = 314
Score = 33.5 bits (75), Expect = 0.055
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 9 WRTAERRRGWRCRGVPTPSGD---RGPGAARPAARGGAGETTGQQRPLQVPGASAAAART 65
W + RRR RG P+G GPG+ PA GG ET + G + R
Sbjct: 154 WLASSRRR---IRGTGVPAGFCHLDGPGSRVPAGAGGGAETAAASSGGGITGEGRSKVRG 210
Query: 66 RLLRWHHRVPSPRATRSPGSI 86
R+ R T SPG +
Sbjct: 211 RV---EGEAWGSRGTMSPGGV 228
>gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo
sapiens]
Length = 410
Score = 33.5 bits (75), Expect = 0.055
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 18 WRCRGVPTPSGDRGPGAARPA-ARGGAGETTGQ-QRPLQVPGASAAAARTRLLRWHHRVP 75
W G +G RG GAARPA R G+ + G+ RP + + A+ R H + P
Sbjct: 49 WGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGEPYRPEEDSRMTPASPEARTSPVHPKFP 108
Query: 76 S-PRATRSPGSIRRTSPCSGGP 96
P + +PG SP + GP
Sbjct: 109 KIPETSVAPG-----SPATAGP 125
>gi|239746270 PREDICTED: hypothetical protein XP_002343719 [Homo
sapiens]
Length = 314
Score = 33.5 bits (75), Expect = 0.055
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 9 WRTAERRRGWRCRGVPTPSGD---RGPGAARPAARGGAGETTGQQRPLQVPGASAAAART 65
W + RRR RG P+G GPG+ PA GG ET + G + R
Sbjct: 154 WLASSRRR---IRGTGVPAGFCHLDGPGSRVPAGAGGGAETAAASSGGGITGEGRSKVRG 210
Query: 66 RLLRWHHRVPSPRATRSPGSI 86
R+ R T SPG +
Sbjct: 211 RV---EGEAWGSRGTMSPGGV 228
>gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo
sapiens]
Length = 410
Score = 33.5 bits (75), Expect = 0.055
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 18 WRCRGVPTPSGDRGPGAARPA-ARGGAGETTGQ-QRPLQVPGASAAAARTRLLRWHHRVP 75
W G +G RG GAARPA R G+ + G+ RP + + A+ R H + P
Sbjct: 49 WGGSGGAVGTGRRGGGAARPAPVRRGSPSSPGEPYRPEEDSRMTPASPEARTSPVHPKFP 108
Query: 76 S-PRATRSPGSIRRTSPCSGGP 96
P + +PG SP + GP
Sbjct: 109 KIPETSVAPG-----SPATAGP 125
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 33.5 bits (75), Expect = 0.055
Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 4 REPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAA 63
R+ SG R RG G G RGPG+ PA R G E T ++ PG ++A
Sbjct: 53 RQRSGSREQAGARGGAEAGGAASDGSRGPGS--PAGR-GRPEATASATLVRSPGPRRSSA 109
Query: 64 RTRLLRWHHRVPSPRATRS-PGSIRRTSPCSGGPD 97
W SPR+TRS G R SP S G +
Sbjct: 110 ------WAEG-GSPRSTRSLLGDPRLRSPGSKGAE 137
>gi|42734395 zinc finger protein 710 [Homo sapiens]
Length = 664
Score = 33.1 bits (74), Expect = 0.072
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 23 VPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATRS 82
VP D GP A A G + Q +++ SA + + R LR R P P +
Sbjct: 126 VPGDDKDAGPAEAPAEAASGGCDALVQSSAVKMIDLSAFSRKPRTLRHLPRTPRPELNVA 185
Query: 83 PGSIRRTSPCSGGPDRPER----PECADACCYLLDPFTLPL 119
P +P G P PE C P PL
Sbjct: 186 PYDPHFPAPARDGFPEPSMALPGPEALPTECGFEPPHLAPL 226
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 32.7 bits (73), Expect = 0.094
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 2 QSREPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAA 61
+ E SG + R RG +G GPGAA AARG AG G P + A
Sbjct: 69 EDEEESGGCSDGEPRALASRGAAAAAGSPGPGAA--AARGAAGPGPG-------PPSGGA 119
Query: 62 AARTRLLR 69
A R+ L++
Sbjct: 120 ATRSPLVK 127
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 32.7 bits (73), Expect = 0.094
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 5 EPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAAR 64
EP+G A R C G+P R PG GG+ + GQ+ P VP A+AA A+
Sbjct: 132 EPAG--AAARAADAACNGLPGSDSRRAPGKG-----GGSKGSPGQRPP--VPAAAAAGAQ 182
Query: 65 TR 66
R
Sbjct: 183 AR 184
>gi|223972612 Crm, cramped-like [Homo sapiens]
Length = 1269
Score = 32.3 bits (72), Expect = 0.12
Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 27 SGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRA-TRSPGS 85
SG G G RP A +++G+ P PG AA + + SP A R P
Sbjct: 466 SGAEGKGVGRPPPAADALQSSGESSPESAPGEGAALS----------LSSPDAPDRPPPR 515
Query: 86 IRRTSPC-----SGGPDRPERPECADAC 108
+ T PC + G D P R A C
Sbjct: 516 HQDTGPCLEKTPAEGRDSPTREPGALPC 543
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 32.3 bits (72), Expect = 0.12
Identities = 31/93 (33%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 14 RRRG--WRCRGVPTPSGDR---GPGAARPAARGGAGETTGQQRPLQVPGASAA---AART 65
+R+G WR + P+G R P PAA G+ E G PL P SAA AR
Sbjct: 31 QRKGLFWRYQKTLGPAGARRGHSPPTVAPAASAGSQEHPGAGGPLCFPARSAAWGPPARA 90
Query: 66 RLLRWHHRVPSPRATRSPGSIR----RTSPCSG 94
P+ R+PG R R SP G
Sbjct: 91 SRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPG 123
>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
Length = 238
Score = 32.3 bits (72), Expect = 0.12
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 10 RTAERRRGWRCRGVPTPSGDRGPGAARPAA----RGGAGETTGQ---QRPLQVPGASAAA 62
R+ R RG R R +P R R + R +G G Q P + S +
Sbjct: 145 RSRSRSRGRRSRSA-SPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSI 203
Query: 63 ARTRLLRWHHRVPSPRATRSPGSIRRTSPCSGGPDRPERPECAD 106
+R R R R PSP+ +RSP SG P R PE D
Sbjct: 204 SRPRSSRSKSRSPSPKRSRSP---------SGSPRRSASPERMD 238
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 32.3 bits (72), Expect = 0.12
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 24 PTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATRSP 83
P G RG GA+ A R + TG P A RLL H P PRA P
Sbjct: 116 PAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRA--GP 173
Query: 84 GSIRRTSPCSGGPDRPE 100
+ SP G +P+
Sbjct: 174 ANRLAGSPPGSGQWKPK 190
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 32.3 bits (72), Expect = 0.12
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 24 PTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATRSP 83
P G RG GA+ A R + TG P A RLL H P PRA P
Sbjct: 116 PAAPGPRGGGASPGARRSDFLQKTGSNSFTVHPRGLHRGAGARLLSNGHSAPEPRA--GP 173
Query: 84 GSIRRTSPCSGGPDRPE 100
+ SP G +P+
Sbjct: 174 ANRLAGSPPGSGQWKPK 190
>gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo
sapiens]
Length = 111
Score = 32.0 bits (71), Expect = 0.16
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 4 REPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAA 63
++P W+ +R G + P R P P RG TG +P +VPG +AAAA
Sbjct: 34 QQPEAWQRRQRN-GEKTNNPPNGCLRRRP--PEPGPRGVRRRRTGGLKPARVPGCAAAAA 90
>gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo
sapiens]
Length = 111
Score = 32.0 bits (71), Expect = 0.16
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 4 REPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAA 63
++P W+ +R G + P R P P RG TG +P +VPG +AAAA
Sbjct: 34 QQPEAWQRRQRN-GEKTNNPPNGCLRRRP--PEPGPRGVRRRRTGGLKPARVPGCAAAAA 90
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 32.0 bits (71), Expect = 0.16
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 22 GVPTPSG---DRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPR 78
G P+P RGP AARP ARG + G RP P A R R R+ S
Sbjct: 334 GPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPW--PCALRPRPRLRAALPSRRLFSRG 391
Query: 79 ATRSPGSIRRTSPCSGGPDRPERPECADACCYLLDPFTLPL 119
A + + P P RP + + ++A L +P L L
Sbjct: 392 AAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHL 432
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 32.0 bits (71), Expect = 0.16
Identities = 32/101 (31%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 22 GVPTPSG---DRGPGAARPAARGGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPR 78
G P+P RGP AARP ARG + G RP P A R R R+ S
Sbjct: 334 GPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPW--PCALRPRPRLRAALPSRRLFSRG 391
Query: 79 ATRSPGSIRRTSPCSGGPDRPERPECADACCYLLDPFTLPL 119
A + + P P RP + + ++A L +P L L
Sbjct: 392 AAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHL 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,229,344
Number of Sequences: 37866
Number of extensions: 422728
Number of successful extensions: 3143
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 2819
Number of HSP's gapped (non-prelim): 677
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.