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Search of human proteins with 5803076
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
(185 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 380 e-106
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 380 e-106
gi|15082258 chromobox homolog 3 [Homo sapiens] 256 8e-69
gi|20544151 chromobox homolog 3 [Homo sapiens] 256 8e-69
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 238 2e-63
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 238 2e-63
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 238 2e-63
gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi... 103 8e-23
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ... 103 8e-23
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ... 103 8e-23
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 67 1e-11
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 66 2e-11
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 65 3e-11
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 63 1e-10
gi|28372505 chromobox homolog 7 [Homo sapiens] 59 2e-09
gi|55770830 chromobox homolog 4 [Homo sapiens] 59 2e-09
gi|46852392 chromobox homolog 6 [Homo sapiens] 59 2e-09
gi|10190682 chromobox homolog 8 [Homo sapiens] 58 4e-09
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 55 3e-08
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 52 3e-07
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 52 3e-07
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 52 4e-07
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 52 4e-07
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 52 4e-07
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 52 4e-07
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 49 2e-06
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 47 7e-06
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 44 8e-05
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 44 8e-05
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 43 2e-04
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 380 bits (976), Expect = e-106
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE
Sbjct: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180
RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK
Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180
Query: 181 KDDKN 185
KDDKN
Sbjct: 181 KDDKN 185
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 380 bits (976), Expect = e-106
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE
Sbjct: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180
RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK
Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180
Query: 181 KDDKN 185
KDDKN
Sbjct: 181 KDDKN 185
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 256 bits (654), Expect = 8e-69
Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKKQN K ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC
Sbjct: 11 MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69
Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
P+LI FL SQK E D G KRK+ SDSE ++SK KKK++ ++KPRGFARGL+PE
Sbjct: 70 PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124
Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177
RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++
Sbjct: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 256 bits (654), Expect = 8e-69
Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKKQN K ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC
Sbjct: 11 MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69
Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
P+LI FL SQK E D G KRK+ SDSE ++SK KKK++ ++KPRGFARGL+PE
Sbjct: 70 PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124
Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177
RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++
Sbjct: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 238 bits (608), Expect = 2e-63
Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
Query: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF
Sbjct: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
Query: 174 PSEDDDKKDD 183
P + ++K+ +
Sbjct: 178 PEDAENKEKE 187
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP +
Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
Query: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91
+ F + + T H + K K + S
Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 238 bits (608), Expect = 2e-63
Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
Query: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF
Sbjct: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
Query: 174 PSEDDDKKDD 183
P + ++K+ +
Sbjct: 178 PEDAENKEKE 187
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP +
Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
Query: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91
+ F + + T H + K K + S
Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 238 bits (608), Expect = 2e-63
Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)
Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59
Query: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF
Sbjct: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117
Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177
Query: 174 PSEDDDKKDD 183
P + ++K+ +
Sbjct: 178 PEDAENKEKE 187
Score = 39.7 bits (91), Expect = 0.001
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP +
Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163
Query: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91
+ F + + T H + K K + S
Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191
>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
HP1 gamma) [Homo sapiens]
Length = 142
Score = 103 bits (257), Expect = 8e-23
Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
Query: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
+ + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
++ Q VI+FYEERLTWH P ++
Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
sapiens]
Length = 142
Score = 103 bits (257), Expect = 8e-23
Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
Query: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
+ + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
++ Q VI+FYEERLTWH P ++
Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
sapiens]
Length = 142
Score = 103 bits (257), Expect = 8e-23
Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)
Query: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
+ + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111
Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
++ Q VI+FYEERLTWH P ++
Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 66.6 bits (161), Expect = 1e-11
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69
+EE+ E+ + E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+ P L+ F
Sbjct: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-- 58
Query: 70 SQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSS 129
QK HE ++ + K +P+K S R ++ EP+ + SS
Sbjct: 59 -QKKEHE--------KEVQNRKRGKRPRGRPRKLTAMSSCSRR-SKLKEPDAPSKSKSSS 108
Query: 130 GELMFLMKWKNSDEAD 145
+SDE D
Sbjct: 109 SSSSSTSSSSSSDEED 124
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 65.9 bits (159), Expect = 2e-11
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 16/106 (15%)
Query: 15 EEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS--- 70
E+ E+ + VEK+LD + GKV Y ++WKG++ +D+TWEPE +L DC +++ EF +
Sbjct: 53 EDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAE 112
Query: 71 ----------QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEE 106
Q+ + D E +D SE K E++ PKKKK++
Sbjct: 113 NKAKAVRKDIQRLSLNNDIFEANS-DSDQQSETK-EDTSPKKKKKK 156
>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
Length = 211
Score = 65.1 bits (157), Expect = 3e-11
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69
+EE+ E+ + E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+ P L+ F Q
Sbjct: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-Q 59
Query: 70 SQKTAHETDKSEGGKR 85
++ E + GKR
Sbjct: 60 KKEHEKEVQNRKRGKR 75
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 63.2 bits (152), Expect = 1e-10
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 18 EEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF------LQ 69
EE Y VE+++D+R KGK EYL++WKG+ ED+TWEPE++L +C + I +F Q
Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
Query: 70 SQKTAHETDK-SEGGKRKADSDSEDKG-EESKPKK----KKEESEKPRGFARGLEPERII 123
+ T T++ S RK S S + ++ PK K ES+ + FA + +
Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123
Query: 124 GATDSSGELMFLMK 137
+ SS + M L K
Sbjct: 124 APSLSSRKNMDLAK 137
>gi|28372505 chromobox homolog 7 [Homo sapiens]
Length = 251
Score = 59.3 bits (142), Expect = 2e-09
Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHET 77
E+ + VE + +RV KGKVEYL+KWKG+ + +TWEPEE++ P L+ + + + E
Sbjct: 8 EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE----ER 63
Query: 78 DKSEGGKRK 86
D++ G +++
Sbjct: 64 DRASGYRKR 72
>gi|55770830 chromobox homolog 4 [Homo sapiens]
Length = 560
Score = 59.3 bits (142), Expect = 2e-09
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
E + VE + +R+ KG+VEYL+KW+G+S + NTWEPEEN+ P L+ F ++
Sbjct: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRER 62
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 59.3 bits (142), Expect = 2e-09
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
E + E ++ RR+ KG++EYL+KWKG++ + +TWEPEEN+ LIA F Q ++
Sbjct: 8 ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKER 62
>gi|10190682 chromobox homolog 8 [Homo sapiens]
Length = 389
Score = 58.2 bits (139), Expect = 4e-09
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
E + E +L RR+ KG++EYL+KWKG+S + +TWEPEEN+ L+A F + ++
Sbjct: 8 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERER 62
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 55.1 bits (131), Expect = 3e-08
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 21 YVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEEN-LDCPDLIAEF--LQSQKTAHE 76
Y VE+++D+R KGK EYL++WKG+ ++TWEPE + L C + I EF L K
Sbjct: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66
Query: 77 TDKSEGGKRKADSDSEDKGEE------SKPKKKKEESEKPRGFARGL-EPERIIGATDSS 129
+ K DS E S P K K S K + L +P++ SS
Sbjct: 67 KSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGKPSS 126
Query: 130 G 130
G
Sbjct: 127 G 127
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 52.0 bits (123), Expect = 3e-07
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK---- 72
+E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 73 ----TAHETDKSEGGKRKADSDSEDKGEESKPK----KKKEESEKPRGFARGLEPERIIG 124
T S +R+ ++ ++ PK K S+ + FA R
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAA 123
Query: 125 ATDSSGELMFLMKWKNSDEADLVP 148
+T S + M ++ NS L P
Sbjct: 124 STLSDTKNMEII---NSTIETLAP 144
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 52.0 bits (123), Expect = 3e-07
Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK---- 72
+E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63
Query: 73 ----TAHETDKSEGGKRKADSDSEDKGEESKPK----KKKEESEKPRGFARGLEPERIIG 124
T S +R+ ++ ++ PK K S+ + FA R
Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAA 123
Query: 125 ATDSSGELMFLMKWKNSDEADLVP 148
+T S + M ++ NS L P
Sbjct: 124 STLSDTKNMEII---NSTIETLAP 144
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform
b [Homo sapiens]
Length = 554
Score = 51.6 bits (122), Expect = 4e-07
Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
+E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58
>gi|25453481 Y chromosome chromodomain protein 1, telomeric
isoform a [Homo sapiens]
Length = 540
Score = 51.6 bits (122), Expect = 4e-07
Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
+E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 51.6 bits (122), Expect = 4e-07
Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
+E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 51.6 bits (122), Expect = 4e-07
Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
+E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q
Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 49.3 bits (116), Expect = 2e-06
Identities = 17/48 (35%), Positives = 33/48 (68%)
Query: 20 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 67
++ VE + D + ++ + YL+KW+G+ D ++TWEP +NL C ++ +F
Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 89
>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo
sapiens]
Length = 350
Score = 47.4 bits (111), Expect = 7e-06
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 38 YLLKWKGFSDEDNTWEPEENLDCPDLIAEF 67
YL+KWKG+ D NTWEP +NL CP L+ +F
Sbjct: 4 YLVKWKGWPDSTNTWEPLQNLKCPLLLQQF 33
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 43.9 bits (102), Expect = 8e-05
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD--CP 61
K+ KK+ E EEE E E + VK + + +G +E+ E EE D
Sbjct: 485 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 544
Query: 62 DLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEK 109
AE S+K ++K EG + + ++++E +GEE++ K++K+ EK
Sbjct: 545 SDQAEEGGSEKEG-SSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEK 591
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 43.9 bits (102), Expect = 8e-05
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD--CP 61
K+ KK+ E EEE E E + VK + + +G +E+ E EE D
Sbjct: 109 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 168
Query: 62 DLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEK 109
AE S+K ++K EG + + ++++E +GEE++ K++K+ EK
Sbjct: 169 SDQAEEGGSEKEG-SSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEK 215
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 42.7 bits (99), Expect = 2e-04
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 3 KKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPD 62
+K+++++ EE EEEEEE V E +LD VV G S+ED T P+ D
Sbjct: 353 EKEDEEEEEEEEEEEEEEEVTEVLLDSCVVS------QVGVGQSEEDGT-RPQSTSDQKL 405
Query: 63 LIAEFLQSQKTAHETDKSEG---GKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEP 119
+++K A E K E + +A+ + +D E + + + E+ A P
Sbjct: 406 WEEVGEEAKKEAEEKAKEEAEEVAEEEAEKEPQDWAETKEEPEAEAEAASSGVPATKQHP 465
Query: 120 ERIIGATDSSGELMFLMKWKNSDEADL---VPAKEANVKCPQVVISFYEERLTWHSYPSE 176
E + D+ + LM +N L PAK + P + ++L PSE
Sbjct: 466 E--VQVEDTDADSCPLMAEENPPSTVLPPPSPAKSDTLIVPSSASGTHRKKL-----PSE 518
Query: 177 DDDKKDDK 184
DD+ ++ K
Sbjct: 519 DDEAEELK 526
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.305 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,510
Number of Sequences: 37866
Number of extensions: 410632
Number of successful extensions: 3648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 2580
Number of HSP's gapped (non-prelim): 1078
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.