Guide to the Human Genome
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Search of human proteins with 5803076

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5803076 heterochromatin protein 1-beta [Homo sapiens]              380   e-106
gi|187960037 heterochromatin protein 1-beta [Homo sapiens]            380   e-106
gi|15082258 chromobox homolog 3 [Homo sapiens]                        256   8e-69
gi|20544151 chromobox homolog 3 [Homo sapiens]                        256   8e-69
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]           238   2e-63
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]           238   2e-63
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]             238   2e-63
gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi...   103   8e-23
gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ...   103   8e-23
gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ...   103   8e-23
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]               67   1e-11
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]                    66   2e-11
gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]               65   3e-11
gi|221307494 chromodomain protein, Y chromosome-like isoform a [...    63   1e-10
gi|28372505 chromobox homolog 7 [Homo sapiens]                         59   2e-09
gi|55770830 chromobox homolog 4 [Homo sapiens]                         59   2e-09
gi|46852392 chromobox homolog 6 [Homo sapiens]                         59   2e-09
gi|10190682 chromobox homolog 8 [Homo sapiens]                         58   4e-09
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]             55   3e-08
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]        52   3e-07
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]         52   3e-07
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor...    52   4e-07
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo...    52   4e-07
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s...    52   4e-07
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s...    52   4e-07
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]      49   2e-06
gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens]     47   7e-06
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ...    44   8e-05
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ...    44   8e-05
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H...    43   2e-04

>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  380 bits (976), Expect = e-106
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
Sbjct: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60

Query: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
           PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE
Sbjct: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120

Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180
           RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK
Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180

Query: 181 KDDKN 185
           KDDKN
Sbjct: 181 KDDKN 185


>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
          Length = 185

 Score =  380 bits (976), Expect = e-106
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC
Sbjct: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60

Query: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
           PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE
Sbjct: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120

Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180
           RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK
Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180

Query: 181 KDDKN 185
           KDDKN
Sbjct: 181 KDDKN 185


>gi|15082258 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  256 bits (654), Expect = 8e-69
 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKKQN K  ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC
Sbjct: 11  MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69

Query: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
           P+LI  FL SQK   E D   G KRK+ SDSE   ++SK KKK++ ++KPRGFARGL+PE
Sbjct: 70  PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124

Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177
           RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++
Sbjct: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181


>gi|20544151 chromobox homolog 3 [Homo sapiens]
          Length = 183

 Score =  256 bits (654), Expect = 8e-69
 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKKQN K  ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC
Sbjct: 11  MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69

Query: 61  PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120
           P+LI  FL SQK   E D   G KRK+ SDSE   ++SK KKK++ ++KPRGFARGL+PE
Sbjct: 70  PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124

Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177
           RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++
Sbjct: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181


>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  238 bits (608), Expect = 2e-63
 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKK  K+  +    E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1   MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59

Query: 61  PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
           P+LI+EF++  K   E       +KSE  KRK  S+  +  ++ K KKK+E+S    RGF
Sbjct: 60  PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117

Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
            RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177

Query: 174 PSEDDDKKDD 183
           P + ++K+ +
Sbjct: 178 PEDAENKEKE 187



 Score = 39.7 bits (91), Expect = 0.001
 Identities = 20/88 (22%), Positives = 39/88 (44%)

Query: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
           K+ +++  ++    E     EK++      G + +L+KWK   + D     E N+ CP +
Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163

Query: 64  IAEFLQSQKTAHETDKSEGGKRKADSDS 91
           +  F + + T H   +    K K  + S
Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191


>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  238 bits (608), Expect = 2e-63
 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKK  K+  +    E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1   MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59

Query: 61  PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
           P+LI+EF++  K   E       +KSE  KRK  S+  +  ++ K KKK+E+S    RGF
Sbjct: 60  PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117

Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
            RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177

Query: 174 PSEDDDKKDD 183
           P + ++K+ +
Sbjct: 178 PEDAENKEKE 187



 Score = 39.7 bits (91), Expect = 0.001
 Identities = 20/88 (22%), Positives = 39/88 (44%)

Query: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
           K+ +++  ++    E     EK++      G + +L+KWK   + D     E N+ CP +
Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163

Query: 64  IAEFLQSQKTAHETDKSEGGKRKADSDS 91
           +  F + + T H   +    K K  + S
Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191


>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
          Length = 191

 Score =  238 bits (608), Expect = 2e-63
 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%)

Query: 1   MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60
           MGKK  K+  +    E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC
Sbjct: 1   MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59

Query: 61  PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113
           P+LI+EF++  K   E       +KSE  KRK  S+  +  ++ K KKK+E+S    RGF
Sbjct: 60  PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117

Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173
            RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y
Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177

Query: 174 PSEDDDKKDD 183
           P + ++K+ +
Sbjct: 178 PEDAENKEKE 187



 Score = 39.7 bits (91), Expect = 0.001
 Identities = 20/88 (22%), Positives = 39/88 (44%)

Query: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63
           K+ +++  ++    E     EK++      G + +L+KWK   + D     E N+ CP +
Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163

Query: 64  IAEFLQSQKTAHETDKSEGGKRKADSDS 91
           +  F + + T H   +    K K  + S
Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191


>gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila
           HP1 gamma) [Homo sapiens]
          Length = 142

 Score =  103 bits (257), Expect = 8e-23
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)

Query: 94  KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
           + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 52  ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111

Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
           ++  Q      VI+FYEERLTWH  P ++
Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140


>gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo
           sapiens]
          Length = 142

 Score =  103 bits (257), Expect = 8e-23
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)

Query: 94  KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
           + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 52  ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111

Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
           ++  Q      VI+FYEERLTWH  P ++
Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140


>gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo
           sapiens]
          Length = 142

 Score =  103 bits (257), Expect = 8e-23
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%)

Query: 94  KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153
           + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+
Sbjct: 52  ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111

Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177
           ++  Q      VI+FYEERLTWH  P ++
Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140


>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
          Length = 532

 Score = 66.6 bits (161), Expect = 1e-11
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 12/136 (8%)

Query: 10  VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69
           +EE+    E+ +  E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+  P L+  F  
Sbjct: 1   MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-- 58

Query: 70  SQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSS 129
            QK  HE        ++  +    K    +P+K    S   R  ++  EP+    +  SS
Sbjct: 59  -QKKEHE--------KEVQNRKRGKRPRGRPRKLTAMSSCSRR-SKLKEPDAPSKSKSSS 108

Query: 130 GELMFLMKWKNSDEAD 145
                     +SDE D
Sbjct: 109 SSSSSTSSSSSSDEED 124


>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
          Length = 860

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 16/106 (15%)

Query: 15  EEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS--- 70
           E+ E+ + VEK+LD +   GKV Y ++WKG++ +D+TWEPE +L DC +++ EF +    
Sbjct: 53  EDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAE 112

Query: 71  ----------QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEE 106
                     Q+ +   D  E     +D  SE K E++ PKKKK++
Sbjct: 113 NKAKAVRKDIQRLSLNNDIFEANS-DSDQQSETK-EDTSPKKKKKK 156


>gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens]
          Length = 211

 Score = 65.1 bits (157), Expect = 3e-11
 Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)

Query: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69
          +EE+    E+ +  E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+  P L+  F Q
Sbjct: 1  MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-Q 59

Query: 70 SQKTAHETDKSEGGKR 85
           ++   E    + GKR
Sbjct: 60 KKEHEKEVQNRKRGKR 75


>gi|221307494 chromodomain protein, Y chromosome-like isoform a
           [Homo sapiens]
          Length = 544

 Score = 63.2 bits (152), Expect = 1e-10
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 14/134 (10%)

Query: 18  EEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF------LQ 69
           EE Y VE+++D+R   KGK EYL++WKG+  ED+TWEPE++L +C + I +F       Q
Sbjct: 4   EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63

Query: 70  SQKTAHETDK-SEGGKRKADSDSEDKG-EESKPKK----KKEESEKPRGFARGLEPERII 123
            + T   T++ S    RK  S S +    ++ PK     K  ES+  + FA   +  +  
Sbjct: 64  KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123

Query: 124 GATDSSGELMFLMK 137
             + SS + M L K
Sbjct: 124 APSLSSRKNMDLAK 137


>gi|28372505 chromobox homolog 7 [Homo sapiens]
          Length = 251

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHET 77
          E+ + VE +  +RV KGKVEYL+KWKG+  + +TWEPEE++  P L+  + + +    E 
Sbjct: 8  EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE----ER 63

Query: 78 DKSEGGKRK 86
          D++ G +++
Sbjct: 64 DRASGYRKR 72


>gi|55770830 chromobox homolog 4 [Homo sapiens]
          Length = 560

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 25/55 (45%), Positives = 38/55 (69%)

Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
          E  + VE +  +R+ KG+VEYL+KW+G+S + NTWEPEEN+  P L+  F   ++
Sbjct: 8  EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRER 62


>gi|46852392 chromobox homolog 6 [Homo sapiens]
          Length = 412

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
          E  +  E ++ RR+ KG++EYL+KWKG++ + +TWEPEEN+    LIA F Q ++
Sbjct: 8  ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKER 62


>gi|10190682 chromobox homolog 8 [Homo sapiens]
          Length = 389

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72
          E  +  E +L RR+ KG++EYL+KWKG+S + +TWEPEEN+    L+A F + ++
Sbjct: 8  ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERER 62


>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
          Length = 506

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)

Query: 21  YVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEEN-LDCPDLIAEF--LQSQKTAHE 76
           Y VE+++D+R   KGK EYL++WKG+   ++TWEPE + L C + I EF  L   K    
Sbjct: 7   YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66

Query: 77  TDKSEGGKRKADSDSEDKGEE------SKPKKKKEESEKPRGFARGL-EPERIIGATDSS 129
               +    K   DS     E      S P K K  S K +     L +P++      SS
Sbjct: 67  KSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGKPSS 126

Query: 130 G 130
           G
Sbjct: 127 G 127


>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
          Length = 541

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 19  EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK---- 72
           +E+ VE ++D+R  K G  +YL++WKG+  +D+TWEPE++L +C   + +F + Q     
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 73  ----TAHETDKSEGGKRKADSDSEDKGEESKPK----KKKEESEKPRGFARGLEPERIIG 124
               T      S   +R+    ++    ++ PK     K   S+  + FA      R   
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAA 123

Query: 125 ATDSSGELMFLMKWKNSDEADLVP 148
           +T S  + M ++   NS    L P
Sbjct: 124 STLSDTKNMEII---NSTIETLAP 144


>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
          Length = 541

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%)

Query: 19  EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK---- 72
           +E+ VE ++D+R  K G  +YL++WKG+  +D+TWEPE++L +C   + +F + Q     
Sbjct: 4   QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63

Query: 73  ----TAHETDKSEGGKRKADSDSEDKGEESKPK----KKKEESEKPRGFARGLEPERIIG 124
               T      S   +R+    ++    ++ PK     K   S+  + FA      R   
Sbjct: 64  KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAA 123

Query: 125 ATDSSGELMFLMKWKNSDEADLVP 148
           +T S  + M ++   NS    L P
Sbjct: 124 STLSDTKNMEII---NSTIETLAP 144


>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform
          b [Homo sapiens]
          Length = 554

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
          +E+ VE ++D+R  K G  +YL++WKG+  +D+TWEPE++L +C   + +F + Q
Sbjct: 4  QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58


>gi|25453481 Y chromosome chromodomain protein 1, telomeric
          isoform a [Homo sapiens]
          Length = 540

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
          +E+ VE ++D+R  K G  +YL++WKG+  +D+TWEPE++L +C   + +F + Q
Sbjct: 4  QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58


>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
          sapiens]
          Length = 554

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
          +E+ VE ++D+R  K G  +YL++WKG+  +D+TWEPE++L +C   + +F + Q
Sbjct: 4  QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58


>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
          sapiens]
          Length = 540

 Score = 51.6 bits (122), Expect = 4e-07
 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71
          +E+ VE ++D+R  K G  +YL++WKG+  +D+TWEPE++L +C   + +F + Q
Sbjct: 4  QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58


>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
          Length = 412

 Score = 49.3 bits (116), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 33/48 (68%)

Query: 20 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 67
          ++ VE + D + ++ +  YL+KW+G+ D ++TWEP +NL C  ++ +F
Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 89


>gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo
          sapiens]
          Length = 350

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 38 YLLKWKGFSDEDNTWEPEENLDCPDLIAEF 67
          YL+KWKG+ D  NTWEP +NL CP L+ +F
Sbjct: 4  YLVKWKGWPDSTNTWEPLQNLKCPLLLQQF 33


>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
           [Homo sapiens]
          Length = 916

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD--CP 61
           K+ KK+  E  EEE E    E    +  VK     + + +G  +E+   E EE  D    
Sbjct: 485 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 544

Query: 62  DLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEK 109
              AE   S+K    ++K EG + + ++++E +GEE++ K++K+  EK
Sbjct: 545 SDQAEEGGSEKEG-SSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEK 591


>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
           [Homo sapiens]
          Length = 540

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)

Query: 4   KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD--CP 61
           K+ KK+  E  EEE E    E    +  VK     + + +G  +E+   E EE  D    
Sbjct: 109 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 168

Query: 62  DLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEK 109
              AE   S+K    ++K EG + + ++++E +GEE++ K++K+  EK
Sbjct: 169 SDQAEEGGSEKEG-SSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEK 215


>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
           sapiens]
          Length = 1251

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 20/188 (10%)

Query: 3   KKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPD 62
           +K+++++ EE  EEEEEE V E +LD  VV           G S+ED T  P+   D   
Sbjct: 353 EKEDEEEEEEEEEEEEEEEVTEVLLDSCVVS------QVGVGQSEEDGT-RPQSTSDQKL 405

Query: 63  LIAEFLQSQKTAHETDKSEG---GKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEP 119
                 +++K A E  K E     + +A+ + +D  E  +  + + E+      A    P
Sbjct: 406 WEEVGEEAKKEAEEKAKEEAEEVAEEEAEKEPQDWAETKEEPEAEAEAASSGVPATKQHP 465

Query: 120 ERIIGATDSSGELMFLMKWKNSDEADL---VPAKEANVKCPQVVISFYEERLTWHSYPSE 176
           E  +   D+  +   LM  +N     L    PAK   +  P      + ++L     PSE
Sbjct: 466 E--VQVEDTDADSCPLMAEENPPSTVLPPPSPAKSDTLIVPSSASGTHRKKL-----PSE 518

Query: 177 DDDKKDDK 184
           DD+ ++ K
Sbjct: 519 DDEAEELK 526


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.305    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,116,510
Number of Sequences: 37866
Number of extensions: 410632
Number of successful extensions: 3648
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 2580
Number of HSP's gapped (non-prelim): 1078
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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