BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|5803076 heterochromatin protein 1-beta [Homo sapiens] (185 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 380 e-106 gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 380 e-106 gi|15082258 chromobox homolog 3 [Homo sapiens] 256 8e-69 gi|20544151 chromobox homolog 3 [Homo sapiens] 256 8e-69 gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 238 2e-63 gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 238 2e-63 gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 238 2e-63 gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophi... 103 8e-23 gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo ... 103 8e-23 gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo ... 103 8e-23 gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 67 1e-11 gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 66 2e-11 gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] 65 3e-11 gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 63 1e-10 gi|28372505 chromobox homolog 7 [Homo sapiens] 59 2e-09 gi|55770830 chromobox homolog 4 [Homo sapiens] 59 2e-09 gi|46852392 chromobox homolog 6 [Homo sapiens] 59 2e-09 gi|10190682 chromobox homolog 8 [Homo sapiens] 58 4e-09 gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 55 3e-08 gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 52 3e-07 gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 52 3e-07 gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 52 4e-07 gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 52 4e-07 gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 52 4e-07 gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 52 4e-07 gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 49 2e-06 gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] 47 7e-06 gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 44 8e-05 gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 44 8e-05 gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 43 2e-04 >gi|5803076 heterochromatin protein 1-beta [Homo sapiens] Length = 185 Score = 380 bits (976), Expect = e-106 Identities = 185/185 (100%), Positives = 185/185 (100%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE Sbjct: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120 Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180 Query: 181 KDDKN 185 KDDKN Sbjct: 181 KDDKN 185 >gi|187960037 heterochromatin protein 1-beta [Homo sapiens] Length = 185 Score = 380 bits (976), Expect = e-106 Identities = 185/185 (100%), Positives = 185/185 (100%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC Sbjct: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE Sbjct: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120 Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK Sbjct: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK 180 Query: 181 KDDKN 185 KDDKN Sbjct: 181 KDDKN 185 >gi|15082258 chromobox homolog 3 [Homo sapiens] Length = 183 Score = 256 bits (654), Expect = 8e-69 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKKQN K ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC Sbjct: 11 MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69 Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120 P+LI FL SQK E D G KRK+ SDSE ++SK KKK++ ++KPRGFARGL+PE Sbjct: 70 PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124 Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177 RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++ Sbjct: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181 >gi|20544151 chromobox homolog 3 [Homo sapiens] Length = 183 Score = 256 bits (654), Expect = 8e-69 Identities = 129/177 (72%), Positives = 148/177 (83%), Gaps = 6/177 (3%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKKQN K ++V E E EE+VVEKVLDRRVV GKVEY LKWKGF+D DNTWEPEENLDC Sbjct: 11 MGKKQNGKS-KKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC 69 Query: 61 PDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPE 120 P+LI FL SQK E D G KRK+ SDSE ++SK KKK++ ++KPRGFARGL+PE Sbjct: 70 PELIEAFLNSQKAGKEKD---GTKRKSLSDSES--DDSKSKKKRDAADKPRGFARGLDPE 124 Query: 121 RIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED 177 RIIGATDSSGELMFLMKWK+SDEADLV AKEAN+KCPQ+VI+FYEERLTWHS P ++ Sbjct: 125 RIIGATDSSGELMFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDE 181 >gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] Length = 191 Score = 238 bits (608), Expect = 2e-63 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC Sbjct: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59 Query: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113 P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF Sbjct: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117 Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173 RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177 Query: 174 PSEDDDKKDD 183 P + ++K+ + Sbjct: 178 PEDAENKEKE 187 Score = 39.7 bits (91), Expect = 0.001 Identities = 20/88 (22%), Positives = 39/88 (44%) Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63 K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP + Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163 Query: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91 + F + + T H + K K + S Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191 >gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] Length = 191 Score = 238 bits (608), Expect = 2e-63 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC Sbjct: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59 Query: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113 P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF Sbjct: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117 Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173 RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177 Query: 174 PSEDDDKKDD 183 P + ++K+ + Sbjct: 178 PEDAENKEKE 187 Score = 39.7 bits (91), Expect = 0.001 Identities = 20/88 (22%), Positives = 39/88 (44%) Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63 K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP + Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163 Query: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91 + F + + T H + K K + S Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191 >gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] Length = 191 Score = 238 bits (608), Expect = 2e-63 Identities = 120/190 (63%), Positives = 149/190 (78%), Gaps = 10/190 (5%) Query: 1 MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDC 60 MGKK K+ + E+EEEYVVEKVLDRRVVKG+VEYLLKWKGFS+E NTWEPE+NLDC Sbjct: 1 MGKK-TKRTADSSSSEDEEEYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNLDC 59 Query: 61 PDLIAEFLQSQKTAHE------TDKSEGGKRKADSDSEDKGEESKPKKKKEESEK-PRGF 113 P+LI+EF++ K E +KSE KRK S+ + ++ K KKK+E+S RGF Sbjct: 60 PELISEFMKKYKKMKEGENNKPREKSESNKRK--SNFSNSADDIKSKKKREQSNDIARGF 117 Query: 114 ARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSY 173 RGLEPE+IIGATDS G+LMFLMKWK++DEADLV AKEANVKCPQ+VI+FYEERLTWH+Y Sbjct: 118 ERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQIVIAFYEERLTWHAY 177 Query: 174 PSEDDDKKDD 183 P + ++K+ + Sbjct: 178 PEDAENKEKE 187 Score = 39.7 bits (91), Expect = 0.001 Identities = 20/88 (22%), Positives = 39/88 (44%) Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDL 63 K+ +++ ++ E EK++ G + +L+KWK + D E N+ CP + Sbjct: 104 KKKREQSNDIARGFERGLEPEKIIGATDSCGDLMFLMKWKDTDEADLVLAKEANVKCPQI 163 Query: 64 IAEFLQSQKTAHETDKSEGGKRKADSDS 91 + F + + T H + K K + S Sbjct: 164 VIAFYEERLTWHAYPEDAENKEKETAKS 191 >gi|239755713 PREDICTED: similar to Chromobox homolog 3 (Drosophila HP1 gamma) [Homo sapiens] Length = 142 Score = 103 bits (257), Expect = 8e-23 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%) Query: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153 + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+ Sbjct: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111 Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177 ++ Q VI+FYEERLTWH P ++ Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140 >gi|239750237 PREDICTED: hypothetical protein XP_002347334 [Homo sapiens] Length = 142 Score = 103 bits (257), Expect = 8e-23 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%) Query: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153 + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+ Sbjct: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111 Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177 ++ Q VI+FYEERLTWH P ++ Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140 >gi|239744537 PREDICTED: hypothetical protein XP_002343183 [Homo sapiens] Length = 142 Score = 103 bits (257), Expect = 8e-23 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 5/89 (5%) Query: 94 KGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN 153 + + SK +KK++ ++KPRGFA GL+PER+IGATD SG+ MFLM+WK+S EAD + AKEA+ Sbjct: 52 ESDVSKSQKKRDAADKPRGFATGLDPERVIGATDGSGKWMFLMRWKDSGEADFMLAKEAS 111 Query: 154 VKCPQV-----VISFYEERLTWHSYPSED 177 ++ Q VI+FYEERLTWH P ++ Sbjct: 112 MQFSQFHYAWPVIAFYEERLTWHFCPEDE 140 >gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] Length = 532 Score = 66.6 bits (161), Expect = 1e-11 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 12/136 (8%) Query: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69 +EE+ E+ + E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+ P L+ F Sbjct: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-- 58 Query: 70 SQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSS 129 QK HE ++ + K +P+K S R ++ EP+ + SS Sbjct: 59 -QKKEHE--------KEVQNRKRGKRPRGRPRKLTAMSSCSRR-SKLKEPDAPSKSKSSS 108 Query: 130 GELMFLMKWKNSDEAD 145 +SDE D Sbjct: 109 SSSSSTSSSSSSDEED 124 >gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] Length = 860 Score = 65.9 bits (159), Expect = 2e-11 Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 16/106 (15%) Query: 15 EEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQS--- 70 E+ E+ + VEK+LD + GKV Y ++WKG++ +D+TWEPE +L DC +++ EF + Sbjct: 53 EDGEDVFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAE 112 Query: 71 ----------QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEE 106 Q+ + D E +D SE K E++ PKKKK++ Sbjct: 113 NKAKAVRKDIQRLSLNNDIFEANS-DSDQQSETK-EDTSPKKKKKK 156 >gi|14249190 chromobox homolog 2 isoform 2 [Homo sapiens] Length = 211 Score = 65.1 bits (157), Expect = 3e-11 Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%) Query: 10 VEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ 69 +EE+ E+ + E +L +R+ KGK+EYL+KW+G+S + N+WEPEEN+ P L+ F Q Sbjct: 1 MEELSSVGEQVFAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILDPRLLLAF-Q 59 Query: 70 SQKTAHETDKSEGGKR 85 ++ E + GKR Sbjct: 60 KKEHEKEVQNRKRGKR 75 >gi|221307494 chromodomain protein, Y chromosome-like isoform a [Homo sapiens] Length = 544 Score = 63.2 bits (152), Expect = 1e-10 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 14/134 (10%) Query: 18 EEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF------LQ 69 EE Y VE+++D+R KGK EYL++WKG+ ED+TWEPE++L +C + I +F Q Sbjct: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63 Query: 70 SQKTAHETDK-SEGGKRKADSDSEDKG-EESKPKK----KKEESEKPRGFARGLEPERII 123 + T T++ S RK S S + ++ PK K ES+ + FA + + Sbjct: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123 Query: 124 GATDSSGELMFLMK 137 + SS + M L K Sbjct: 124 APSLSSRKNMDLAK 137 >gi|28372505 chromobox homolog 7 [Homo sapiens] Length = 251 Score = 59.3 bits (142), Expect = 2e-09 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 4/69 (5%) Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHET 77 E+ + VE + +RV KGKVEYL+KWKG+ + +TWEPEE++ P L+ + + + E Sbjct: 8 EQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKE----ER 63 Query: 78 DKSEGGKRK 86 D++ G +++ Sbjct: 64 DRASGYRKR 72 >gi|55770830 chromobox homolog 4 [Homo sapiens] Length = 560 Score = 59.3 bits (142), Expect = 2e-09 Identities = 25/55 (45%), Positives = 38/55 (69%) Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72 E + VE + +R+ KG+VEYL+KW+G+S + NTWEPEEN+ P L+ F ++ Sbjct: 8 EHVFAVESIEKKRIRKGRVEYLVKWRGWSPKYNTWEPEENILDPRLLIAFQNRER 62 >gi|46852392 chromobox homolog 6 [Homo sapiens] Length = 412 Score = 59.3 bits (142), Expect = 2e-09 Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72 E + E ++ RR+ KG++EYL+KWKG++ + +TWEPEEN+ LIA F Q ++ Sbjct: 8 ERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKER 62 >gi|10190682 chromobox homolog 8 [Homo sapiens] Length = 389 Score = 58.2 bits (139), Expect = 4e-09 Identities = 25/55 (45%), Positives = 39/55 (70%) Query: 18 EEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK 72 E + E +L RR+ KG++EYL+KWKG+S + +TWEPEEN+ L+A F + ++ Sbjct: 8 ERVFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILDARLLAAFEERER 62 >gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] Length = 506 Score = 55.1 bits (131), Expect = 3e-08 Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%) Query: 21 YVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEEN-LDCPDLIAEF--LQSQKTAHE 76 Y VE+++D+R KGK EYL++WKG+ ++TWEPE + L C + I EF L K Sbjct: 7 YEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHMSKDKRI 66 Query: 77 TDKSEGGKRKADSDSEDKGEE------SKPKKKKEESEKPRGFARGL-EPERIIGATDSS 129 + K DS E S P K K S K + L +P++ SS Sbjct: 67 KSGKQSSTSKLLRDSRGPSVEKLSHRPSDPGKSKGTSHKRKRINPPLAKPKKGYSGKPSS 126 Query: 130 G 130 G Sbjct: 127 G 127 >gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] Length = 541 Score = 52.0 bits (123), Expect = 3e-07 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK---- 72 +E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 73 ----TAHETDKSEGGKRKADSDSEDKGEESKPK----KKKEESEKPRGFARGLEPERIIG 124 T S +R+ ++ ++ PK K S+ + FA R Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAA 123 Query: 125 ATDSSGELMFLMKWKNSDEADLVP 148 +T S + M ++ NS L P Sbjct: 124 STLSDTKNMEII---NSTIETLAP 144 >gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] Length = 541 Score = 52.0 bits (123), Expect = 3e-07 Identities = 39/144 (27%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQK---- 72 +E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQTEKQK 63 Query: 73 ----TAHETDKSEGGKRKADSDSEDKGEESKPK----KKKEESEKPRGFARGLEPERIIG 124 T S +R+ ++ ++ PK K S+ + FA R Sbjct: 64 KLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVRRKAA 123 Query: 125 ATDSSGELMFLMKWKNSDEADLVP 148 +T S + M ++ NS L P Sbjct: 124 STLSDTKNMEII---NSTIETLAP 144 >gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b [Homo sapiens] Length = 554 Score = 51.6 bits (122), Expect = 4e-07 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%) Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71 +E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58 >gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform a [Homo sapiens] Length = 540 Score = 51.6 bits (122), Expect = 4e-07 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%) Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71 +E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58 >gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo sapiens] Length = 554 Score = 51.6 bits (122), Expect = 4e-07 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%) Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71 +E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58 >gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo sapiens] Length = 540 Score = 51.6 bits (122), Expect = 4e-07 Identities = 22/55 (40%), Positives = 39/55 (70%), Gaps = 2/55 (3%) Query: 19 EEYVVEKVLDRRVVK-GKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEFLQSQ 71 +E+ VE ++D+R K G +YL++WKG+ +D+TWEPE++L +C + +F + Q Sbjct: 4 QEFEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQ 58 >gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] Length = 412 Score = 49.3 bits (116), Expect = 2e-06 Identities = 17/48 (35%), Positives = 33/48 (68%) Query: 20 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEF 67 ++ VE + D + ++ + YL+KW+G+ D ++TWEP +NL C ++ +F Sbjct: 42 DFEVEYLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLKCVRILKQF 89 >gi|13375930 suppressor of variegation 3-9 homolog 2 [Homo sapiens] Length = 350 Score = 47.4 bits (111), Expect = 7e-06 Identities = 18/30 (60%), Positives = 23/30 (76%) Query: 38 YLLKWKGFSDEDNTWEPEENLDCPDLIAEF 67 YL+KWKG+ D NTWEP +NL CP L+ +F Sbjct: 4 YLVKWKGWPDSTNTWEPLQNLKCPLLLQQF 33 >gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 [Homo sapiens] Length = 916 Score = 43.9 bits (102), Expect = 8e-05 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD--CP 61 K+ KK+ E EEE E E + VK + + +G +E+ E EE D Sbjct: 485 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 544 Query: 62 DLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEK 109 AE S+K ++K EG + + ++++E +GEE++ K++K+ EK Sbjct: 545 SDQAEEGGSEKEG-SSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEK 591 >gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 [Homo sapiens] Length = 540 Score = 43.9 bits (102), Expect = 8e-05 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%) Query: 4 KQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD--CP 61 K+ KK+ E EEE E E + VK + + +G +E+ E EE D Sbjct: 109 KEEKKEAAEEKEEEPEAEEEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAK 168 Query: 62 DLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEK 109 AE S+K ++K EG + + ++++E +GEE++ K++K+ EK Sbjct: 169 SDQAEEGGSEKEG-SSEKEEGEQEEGETEAEAEGEEAEAKEEKKVEEK 215 >gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo sapiens] Length = 1251 Score = 42.7 bits (99), Expect = 2e-04 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 20/188 (10%) Query: 3 KKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPD 62 +K+++++ EE EEEEEE V E +LD VV G S+ED T P+ D Sbjct: 353 EKEDEEEEEEEEEEEEEEEVTEVLLDSCVVS------QVGVGQSEEDGT-RPQSTSDQKL 405 Query: 63 LIAEFLQSQKTAHETDKSEG---GKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEP 119 +++K A E K E + +A+ + +D E + + + E+ A P Sbjct: 406 WEEVGEEAKKEAEEKAKEEAEEVAEEEAEKEPQDWAETKEEPEAEAEAASSGVPATKQHP 465 Query: 120 ERIIGATDSSGELMFLMKWKNSDEADL---VPAKEANVKCPQVVISFYEERLTWHSYPSE 176 E + D+ + LM +N L PAK + P + ++L PSE Sbjct: 466 E--VQVEDTDADSCPLMAEENPPSTVLPPPSPAKSDTLIVPSSASGTHRKKL-----PSE 518 Query: 177 DDDKKDDK 184 DD+ ++ K Sbjct: 519 DDEAEELK 526 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.305 0.128 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,116,510 Number of Sequences: 37866 Number of extensions: 410632 Number of successful extensions: 3648 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 239 Number of HSP's that attempted gapping in prelim test: 2580 Number of HSP's gapped (non-prelim): 1078 length of query: 185 length of database: 18,247,518 effective HSP length: 96 effective length of query: 89 effective length of database: 14,612,382 effective search space: 1300501998 effective search space used: 1300501998 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.9 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.