Guide to the Human Genome
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Name: LOC100289943 Sequence: fasta or formatted (142aa) NCBI GI: 239750237
Description:

PREDICTED: hypothetical protein XP_002347334

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         10           2
 C cysteine            2.1          3           1
 D aspartate           5.6          8           1
 E glutamate           5.6          8           2
 F phenylalanine       9.9         14           3
 G glycine            10.6         15           2
 H histidine           2.8          4           1
 I isoleucine          3.5          5           1
 K lysine              4.9          7           2
 L leucine             9.2         13           2
 M methionine          3.5          5           1
 N asparagine          0.0          0           0
 P proline             4.9          7           2
 Q glutamine           4.2          6           1
 R arginine            4.9          7           1
 S serine              6.3          9           1
 T threonine           4.9          7           1
 V valine              4.9          7           1
 W tryptophan          3.5          5           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347334 
LOC100292569          1.000   PREDICTED: similar to Chromobox homolog 3 (Drosophi...
LOC100288472          1.000   PREDICTED: hypothetical protein XP_002343183 
CBX3                  0.414   chromobox homolog 3 
CBX3                  0.414   chromobox homolog 3 
CBX1                  0.281   heterochromatin protein 1-beta 
CBX1                  0.281   heterochromatin protein 1-beta 
CBX5                  0.270   heterochromatin protein 1-alpha 
CBX5                  0.270   heterochromatin protein 1-alpha 
CBX5                  0.270   heterochromatin protein 1-alpha 
PDE6A                 0.007   phosphodiesterase 6A 
IRF9                  0.007   interferon-stimulated transcription factor 3, gamma ...
LOC100133220          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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