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Search of human proteins with 5729822
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5729822 Fas-activated serine/threonine kinase isoform 1
[Homo sapiens]
(549 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5729822 Fas-activated serine/threonine kinase isoform 1 [Homo... 1119 0.0
gi|39995107 Fas-activated serine/threonine kinase isoform 4 [Hom... 770 0.0
gi|40068497 FAST kinase domains 3 [Homo sapiens] 110 4e-24
gi|40217810 cell cycle progression 2 protein isoform 2 [Homo sap... 76 7e-14
gi|13569848 cell cycle progression 2 protein isoform 2 [Homo sap... 76 7e-14
gi|40217812 cell cycle progression 2 protein isoform 1 [Homo sap... 69 1e-11
gi|11141903 FAST kinase domains 5 [Homo sapiens] 50 5e-06
gi|188497683 FAST kinase domains 1 [Homo sapiens] 42 0.002
gi|153792074 proline rich 12 [Homo sapiens] 37 0.047
gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens] 37 0.061
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 36 0.080
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 36 0.080
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 36 0.080
gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens] 35 0.14
gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens] 35 0.14
gi|209969832 FAST kinase domains 2 [Homo sapiens] 35 0.18
gi|209969830 FAST kinase domains 2 [Homo sapiens] 35 0.18
gi|45267832 FAST kinase domains 2 [Homo sapiens] 35 0.18
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 33 0.52
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 33 0.68
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 33 0.68
gi|151301204 unc-51-like kinase 4 [Homo sapiens] 33 0.68
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.68
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.68
gi|216547575 Fas apoptotic inhibitory molecule 3 isoform a [Homo... 33 0.68
gi|216547554 Fas apoptotic inhibitory molecule 3 isoform b [Homo... 33 0.68
gi|4885641 Fas apoptotic inhibitory molecule 3 isoform a [Homo s... 33 0.68
gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens] 33 0.88
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 32 1.2
>gi|5729822 Fas-activated serine/threonine kinase isoform 1 [Homo
sapiens]
Length = 549
Score = 1119 bits (2895), Expect = 0.0
Identities = 549/549 (100%), Positives = 549/549 (100%)
Query: 1 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP 60
MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP
Sbjct: 1 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP 60
Query: 61 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR 120
CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR
Sbjct: 61 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR 120
Query: 121 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL 180
LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL
Sbjct: 121 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCAL 180
Query: 181 EQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVM 240
EQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVM
Sbjct: 181 EQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVM 240
Query: 241 VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL 300
VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL
Sbjct: 241 VLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFMPCL 300
Query: 301 ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL 360
ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL
Sbjct: 301 ERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRRYLSL 360
Query: 361 LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ 420
LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ
Sbjct: 361 LDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQ 420
Query: 421 DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV 480
DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV
Sbjct: 421 DLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLV 480
Query: 481 LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL 540
LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL
Sbjct: 481 LRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQAL 540
Query: 541 GLRWGPEGG 549
GLRWGPEGG
Sbjct: 541 GLRWGPEGG 549
>gi|39995107 Fas-activated serine/threonine kinase isoform 4 [Homo
sapiens]
Length = 408
Score = 770 bits (1989), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 170 FPSDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAE 229
FPSDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAE
Sbjct: 29 FPSDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQGLEAALSCPRFLRYPRQHLISSLAE 88
Query: 230 ARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNY 289
ARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNY
Sbjct: 89 ARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNY 148
Query: 290 LPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTP 349
LPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTP
Sbjct: 149 LPLEQQFMPCLERILAREAGVAPLATVNILMSLCQLRCLPFRALHFVFSPGFINYISGTP 208
Query: 350 HALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGL 409
HALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGL
Sbjct: 209 HALIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGL 268
Query: 410 RQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSAT 469
RQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSAT
Sbjct: 269 RQLLGEEKYRQDLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSAT 328
Query: 470 TRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQL 529
TRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQL
Sbjct: 329 TRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQL 388
Query: 530 KSYLRQKLQALGLRWGPEGG 549
KSYLRQKLQALGLRWGPEGG
Sbjct: 389 KSYLRQKLQALGLRWGPEGG 408
Score = 67.4 bits (163), Expect = 3e-11
Identities = 36/65 (55%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 1 MRRPRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP 60
MRRPRGEPGPRAPRPTEGATCAGPGES PS ++ L + L +PP P
Sbjct: 1 MRRPRGEPGPRAPRPTEGATCAGPGESCFPSDGPLVCALEQERR--------LRLPPKPP 52
Query: 61 CCLGP 65
L P
Sbjct: 53 PPLQP 57
>gi|40068497 FAST kinase domains 3 [Homo sapiens]
Length = 662
Score = 110 bits (274), Expect = 4e-24
Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 27/308 (8%)
Query: 235 LTPHVMVLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQ 294
L P V+ + ++ +R + +L A+A V Q + S + + L+ PFG+LNYLP
Sbjct: 366 LDPEVVCRVMEYCSRELILSKPILNAVAETFVCQTEKFSPRQISALMEPFGKLNYLPPNA 425
Query: 295 QFM-PCLERILAREAGVAPLATVNILMSLCQLR-CLPFRALHFVFSPGFINYISGTPHAL 352
+ LE +L P ++ L+ C L C P L +F P F+ + G L
Sbjct: 426 SALFRKLENVLFTHFNYFPPKSLLKLLHSCSLNECHPVNFLAKIFKPLFLQRLQGKESHL 485
Query: 353 --IVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLR 410
+ R L+ L A LE P Y+GP+L + QV F P + V GL
Sbjct: 486 DTLSRAQLTQLFLASVLECPFYKGPKLLPKYQVKSFLTPCCSLETPVDSQLYRYVKIGLT 545
Query: 411 QLLGEEKY-RQDLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSAT 469
LLG Y + P Y D + G VLP S
Sbjct: 546 NLLGARLYFAPKVLTPYCYTIDVEIKLDEEGFVLP----------------------STA 583
Query: 470 TRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGLPQL 529
D +R+ L + FC + + LLG A+++RHL L+GYQ++ +P+ E+ + +L
Sbjct: 584 NEDIHKRIALCIDGPKRFCSNSKHLLGKEAIKQRHLQLLGYQVVQIPYHEIGMLKSRREL 643
Query: 530 KSYLRQKL 537
YL++KL
Sbjct: 644 VEYLQRKL 651
>gi|40217810 cell cycle progression 2 protein isoform 2 [Homo
sapiens]
Length = 521
Score = 76.3 bits (186), Expect = 7e-14
Identities = 113/462 (24%), Positives = 189/462 (40%), Gaps = 29/462 (6%)
Query: 85 LQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRRLGQLLGSRPRPPP--VEQVTLQDL 142
+ L+++A P ELL LG + + ++ ++ L RL LL +P ++ L
Sbjct: 72 VDHLIKKATRPEELLELLGGSHD-LDSNQAAMVLIRLSHLLSEKPEDKGLLIQDAHFHQL 130
Query: 143 SQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCALEQERRLRLPPKPPPPLQPLLRG 202
L+ S T+ L LG P + ++EQE R R+ L L
Sbjct: 131 LCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLKYKHLAFLAES 190
Query: 203 GQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVMVLLAQHLARHRLREPQLLEAIA 262
A LS + + L++ L E H +V + + L EP +
Sbjct: 191 C----ATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVMMKVGH--LSEPLMNRLED 244
Query: 263 HFLVVQETQLSSKVVQKLVLPFGRLNYLP-LEQQFMPCLERILAREA-GVAPLATVNILM 320
++ + ++ + ++L F RLN+ P E QF + L E G+ P V+++
Sbjct: 245 KHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQVDLVW 304
Query: 321 SLCQLRCLPFRALHFVFSPGF-INYISGTPHA--LIVRRYLSLLDTAVELELPGYRGPRL 377
+LC L+ L V P F I ++ G ++ L + TA+ LE P Y GP L
Sbjct: 305 ALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATAL-LEYPEYSGPLL 363
Query: 378 PRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGE-EKYRQDLTVPPGYCTDFLLCA 436
P + P P DR + + E L+ LLG +K ++ G+ D +
Sbjct: 364 PASA---VAPGPSALDRKVTPLQKE--LQETLKGLLGSADKGSLEVATQYGWVLDAEVLL 418
Query: 437 SSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLG 496
S G LPVR D P+ Q S + ++R+ + E +F + LLG
Sbjct: 419 DSDGEFLPVR--DFVAPH------LAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLG 470
Query: 497 SRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQ 538
L RH+ G+ ++ +PF E + Q +YL+ K++
Sbjct: 471 RFVLARRHIVAAGFLIVDVPFYEWLELKSEWQKGAYLKDKMR 512
>gi|13569848 cell cycle progression 2 protein isoform 2 [Homo
sapiens]
Length = 521
Score = 76.3 bits (186), Expect = 7e-14
Identities = 113/462 (24%), Positives = 189/462 (40%), Gaps = 29/462 (6%)
Query: 85 LQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRRLGQLLGSRPRPPP--VEQVTLQDL 142
+ L+++A P ELL LG + + ++ ++ L RL LL +P ++ L
Sbjct: 72 VDHLIKKATRPEELLELLGGSHD-LDSNQAAMVLIRLSHLLSEKPEDKGLLIQDAHFHQL 130
Query: 143 SQLIIRNCPSFDIHTIHVCLHLAVLLGFPSDGPLVCALEQERRLRLPPKPPPPLQPLLRG 202
L+ S T+ L LG P + ++EQE R R+ L L
Sbjct: 131 LCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLKYKHLAFLAES 190
Query: 203 GQGLEAALSCPRFLRYPRQHLISSLAEARPEELTPHVMVLLAQHLARHRLREPQLLEAIA 262
A LS + + L++ L E H +V + + L EP +
Sbjct: 191 C----ATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVMMKVGH--LSEPLMNRLED 244
Query: 263 HFLVVQETQLSSKVVQKLVLPFGRLNYLP-LEQQFMPCLERILAREA-GVAPLATVNILM 320
++ + ++ + ++L F RLN+ P E QF + L E G+ P V+++
Sbjct: 245 KHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQVDLVW 304
Query: 321 SLCQLRCLPFRALHFVFSPGF-INYISGTPHA--LIVRRYLSLLDTAVELELPGYRGPRL 377
+LC L+ L V P F I ++ G ++ L + TA+ LE P Y GP L
Sbjct: 305 ALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATAL-LEYPEYSGPLL 363
Query: 378 PRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGE-EKYRQDLTVPPGYCTDFLLCA 436
P + P P DR + + E L+ LLG +K ++ G+ D +
Sbjct: 364 PASA---VAPGPSALDRKVTPLQKE--LQETLKGLLGSADKGSLEVATQYGWVLDAEVLL 418
Query: 437 SSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLG 496
S G LPVR D P+ Q S + ++R+ + E +F + LLG
Sbjct: 419 DSDGEFLPVR--DFVAPH------LAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLG 470
Query: 497 SRALRERHLGLMGYQLLPLPFEELESQRGLPQLKSYLRQKLQ 538
L RH+ G+ ++ +PF E + Q +YL+ K++
Sbjct: 471 RFVLARRHIVAAGFLIVDVPFYEWLELKSEWQKGAYLKDKMR 512
>gi|40217812 cell cycle progression 2 protein isoform 1 [Homo
sapiens]
Length = 631
Score = 68.9 bits (167), Expect = 1e-11
Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 21/324 (6%)
Query: 221 QHLISSLAEARPEELTPHVMVLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKL 280
Q L + L P LT + A+ A + L EA A ++ + ++ + +
Sbjct: 314 QRLATDLLSLMPS-LTSGEVAHCAKSFALLKWLSLPLFEAFAQHVLNRAQDITLPHLCSV 372
Query: 281 VLPFGRLNYLP-LEQQFMPCLERILAREA-GVAPLATVNILMSLCQLRCLPFRALHFVFS 338
+L F RLN+ P E QF + L E G+ P V+++ +LC L+ L V
Sbjct: 373 LLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQVDLVWALCVLQQAREAELQAVLH 432
Query: 339 PGF-INYISGTPHA--LIVRRYLSLLDTAVELELPGYRGPRLPRRQQVPIFPQPLITDRA 395
P F I ++ G ++ L + TA+ LE P Y GP LP + P P DR
Sbjct: 433 PEFHIQFLGGKSQKDQNTFQKLLHINATAL-LEYPEYSGPLLPASA---VAPGPSALDRK 488
Query: 396 RCKYSHKDIVAEGLRQLLGE-EKYRQDLTVPPGYCTDFLLCASSSGAVLPVRTQDPFLPY 454
+ + E L+ LLG +K ++ G+ D + S G LPVR D P+
Sbjct: 489 VTPLQKE--LQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDSDGEFLPVR--DFVAPH 544
Query: 455 PPRSCPQGQAASSATTRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLP 514
Q S + ++R+ + E +F + LLG L RH+ G+ ++
Sbjct: 545 ------LAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRHIVAAGFLIVD 598
Query: 515 LPFEELESQRGLPQLKSYLRQKLQ 538
+PF E + Q +YL+ K++
Sbjct: 599 VPFYEWLELKSEWQKGAYLKDKMR 622
>gi|11141903 FAST kinase domains 5 [Homo sapiens]
Length = 764
Score = 50.1 bits (118), Expect = 5e-06
Identities = 47/177 (26%), Positives = 71/177 (40%), Gaps = 10/177 (5%)
Query: 214 RFLRYPRQHLISSLAEARPEELTPHVMVLLAQHLARH----RLREPQLLEAIAHFLVVQE 269
RF + + + E P+ + P + V HL + R ++ A+A L +
Sbjct: 364 RFTHVDHINFMKQIGEIAPQRI-PSLGVQGVMHLTLYCSALRFLNEGVMNAVAASLPPRV 422
Query: 270 TQLSSKVVQKLVLPFGRLNYLP--LEQQFMPCLERILAR--EAGVAPLATVNILMSLCQL 325
SK V K++ FG LNY P E+ + + I + E P L+ L L
Sbjct: 423 AHCRSKDVAKILWSFGTLNYKPPNAEEFYSSLISEIHRKMPEFNQYPEHLPTCLLGLAFL 482
Query: 326 RCLPFRALHFVFSPGFINYISGTPHALIVRRYLSLLDTAVELELPGYRGPRLPRRQQ 382
P + F SPGF+ +++ L LD V +E P YRG RL Q
Sbjct: 483 EYFPVELIDFALSPGFVRLAQERTKFDLLKE-LYTLDGTVGIECPDYRGNRLSTHLQ 538
Score = 32.7 bits (73), Expect = 0.88
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 467 SATTRDPAQRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPLPFEELESQRGL 526
+A + P ++ + R +C R LLG ++ R L +GY+++ L + E L
Sbjct: 687 AACMQTPRMKLAVQFTNRNQYCYGSRDLLGLHNMKRRQLARLGYRVVELSYWE-----WL 741
Query: 527 PQLKSYLRQKLQAL 540
P LK +KL L
Sbjct: 742 PLLKRTRLEKLAFL 755
>gi|188497683 FAST kinase domains 1 [Homo sapiens]
Length = 847
Score = 41.6 bits (96), Expect = 0.002
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 14/268 (5%)
Query: 257 LLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQ-QFM-PCLERILAREAGVAPLA 314
LL+ IA V Q ++ + ++ PF LNY P ++ +F+ C++ + + + P
Sbjct: 553 LLDRIASVAVQQIEKIHPFTIPAIIRPFSVLNYDPPQRDEFLGTCVQHLNSYLGILDPFI 612
Query: 315 TVNILMSLCQLRCLPFRALHFVFSPGFINYISGTPHALIVRR------YLSLLDTAVELE 368
V + SL L P L +F+ F+ + L R +L L+ +V LE
Sbjct: 613 LVFLGFSLATLEYFPEDLLKAIFNIKFLARLDSQLEILSPSRSARVQFHLMELNRSVCLE 672
Query: 369 LPGYRGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEEKYRQDLTVPPGY 428
P ++ P R F Q + + I L G + + P +
Sbjct: 673 CPEFQIPWFHDR-----FCQQYNKGIGGMDGTQQQIFKMLAEVLGGINCVKASVLTPYYH 727
Query: 429 CTDFLLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDP-AQRVVLVLRERWHF 487
DF LP + + L P + + P A+R+ L +
Sbjct: 728 KVDFECILDKRKKPLPYGSHNIALGQLPEMPWESNIEIVGSRLPPGAERIALEFLDSKAL 787
Query: 488 CRDGRVLLGSRALRERHLGLMGYQLLPL 515
CR+ + G A+++RHL ++GY+++ +
Sbjct: 788 CRNIPHMKGKSAMKKRHLEILGYRVIQI 815
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 37.0 bits (84), Expect = 0.047
Identities = 48/160 (30%), Positives = 59/160 (36%), Gaps = 26/160 (16%)
Query: 76 GPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAH--HYSVALRRLGQLLGSRPRPPP 133
G +A GL RL E+ K P G+ P + HY + LG L P PPP
Sbjct: 713 GATAALELGLGRLKEKKKGPERG----GETPEGLATSVVHYGAGAKELGAFLQKSPPPPP 768
Query: 134 VEQVTLQDLSQLIIRNCPSFDIHTI----HVCLHLAVLLGFPSDGPL-----VCALEQER 184
+ Q ++ D+ + L +VL PS P V LE
Sbjct: 769 PTAQSTQPTPHGLLLEAGGPDLPLVLPPPPPQLLPSVLSHAPSPSPSASKVGVHLLEPAT 828
Query: 185 RLRL-----PPKPPPPLQPL-----LRGGQGLEAALSCPR 214
R PP PPPP PL LR GLE A PR
Sbjct: 829 RDGAPQPPPPPPPPPPPMPLQLEAHLR-SHGLEPAAPSPR 867
>gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens]
Length = 972
Score = 36.6 bits (83), Expect = 0.061
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 10 PRAPRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQPCCLGPSKWG 69
P PRP + GPG SPS +S + ++P+RL+ L Q G G
Sbjct: 466 PSPPRPEHASWARGPG---SPSVDSSSVTTVPRPSTPSRLALFLR----QQSLGGSESPG 518
Query: 70 DRPVGGGPSAGPVQGLQRLLEQAKSPGEL 98
P G SA P R A+ PGEL
Sbjct: 519 PAPCSPGLSASPASSPGRRPTPAEEPGEL 547
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 36.2 bits (82), Expect = 0.080
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 172 SDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQ-GLEAALSCPRFLRYPRQHLISSLAEA 230
S PL L+ E L LPP+PPP P ++GG GLE LSC + + + L+ + E+
Sbjct: 563 SGPPLPNGLKPEFALALPPEPPP--GPEVKGGSCGLEHELSCSKNEKELEELLLEASQES 620
Query: 231 RPEEL 235
E L
Sbjct: 621 GQETL 625
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 36.2 bits (82), Expect = 0.080
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 172 SDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQ-GLEAALSCPRFLRYPRQHLISSLAEA 230
S PL L+ E L LPP+PPP P ++GG GLE LSC + + + L+ + E+
Sbjct: 563 SGPPLPNGLKPEFALALPPEPPP--GPEVKGGSCGLEHELSCSKNEKELEELLLEASQES 620
Query: 231 RPEEL 235
E L
Sbjct: 621 GQETL 625
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 36.2 bits (82), Expect = 0.080
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 172 SDGPLVCALEQERRLRLPPKPPPPLQPLLRGGQ-GLEAALSCPRFLRYPRQHLISSLAEA 230
S PL L+ E L LPP+PPP P ++GG GLE LSC + + + L+ + E+
Sbjct: 563 SGPPLPNGLKPEFALALPPEPPP--GPEVKGGSCGLEHELSCSKNEKELEELLLEASQES 620
Query: 231 RPEEL 235
E L
Sbjct: 621 GQETL 625
>gi|217416350 cask-interacting protein 2 isoform b [Homo sapiens]
Length = 1120
Score = 35.4 bits (80), Expect = 0.14
Identities = 41/139 (29%), Positives = 51/139 (36%), Gaps = 26/139 (18%)
Query: 8 PGPRAPRPTEGATCAGPGESW-SPSPNSMLRVLLSAQTSPARLSGLLLIPPVQPCCLGP- 65
PGP AP P+ + P S P P+S L AQ P L+ + P P C GP
Sbjct: 934 PGPAAPLPSPTPGESPPASSLPQPEPSS-----LPAQGVPTPLAPSPAMQPPVPPCPGPG 988
Query: 66 ------SKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALR 119
S+W P A P L K PG P V + +
Sbjct: 989 LESSAASRWNGETE---PPAAPAALL-------KVPGA---GTAPKPVSVACTQLAFSGP 1035
Query: 120 RLGQLLGSRPRPPPVEQVT 138
+L LG RP PPP + T
Sbjct: 1036 KLAPRLGPRPVPPPRPEST 1054
>gi|217416347 cask-interacting protein 2 isoform a [Homo sapiens]
Length = 1202
Score = 35.4 bits (80), Expect = 0.14
Identities = 41/139 (29%), Positives = 51/139 (36%), Gaps = 26/139 (18%)
Query: 8 PGPRAPRPTEGATCAGPGESW-SPSPNSMLRVLLSAQTSPARLSGLLLIPPVQPCCLGP- 65
PGP AP P+ + P S P P+S L AQ P L+ + P P C GP
Sbjct: 1016 PGPAAPLPSPTPGESPPASSLPQPEPSS-----LPAQGVPTPLAPSPAMQPPVPPCPGPG 1070
Query: 66 ------SKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALR 119
S+W P A P L K PG P V + +
Sbjct: 1071 LESSAASRWNGETE---PPAAPAALL-------KVPGA---GTAPKPVSVACTQLAFSGP 1117
Query: 120 RLGQLLGSRPRPPPVEQVT 138
+L LG RP PPP + T
Sbjct: 1118 KLAPRLGPRPVPPPRPEST 1136
>gi|209969832 FAST kinase domains 2 [Homo sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.18
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 358 LSLLDTAVELELPGY-RGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEE 416
L LDT ++L+ Y R L +P P+ L + K VAE L LLG E
Sbjct: 540 LHTLDTCLKLDDTVYLRDIAL----SLPQLPRELPSSHTNAK------VAEVLSSLLGGE 589
Query: 417 -KYRQDLTVPPGYCTDF-LLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPA 474
+ +D+ +P Y DF + ++ VLP+ D T+
Sbjct: 590 GHFSKDVHLPHNYHIDFEIRMDTNRNQVLPLSDVD------------------TTSATDI 631
Query: 475 QRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPL---PFEELESQRGLPQLKS 531
QRV ++ R +C G A++ RHL MG+ ++ + ++LE + + LK+
Sbjct: 632 QRVAVLCVSRSAYCLGSSHPRGFLAMKMRHLNAMGFHVILVNNWEMDKLEMEDAVTFLKT 691
>gi|209969830 FAST kinase domains 2 [Homo sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.18
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 358 LSLLDTAVELELPGY-RGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEE 416
L LDT ++L+ Y R L +P P+ L + K VAE L LLG E
Sbjct: 540 LHTLDTCLKLDDTVYLRDIAL----SLPQLPRELPSSHTNAK------VAEVLSSLLGGE 589
Query: 417 -KYRQDLTVPPGYCTDF-LLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPA 474
+ +D+ +P Y DF + ++ VLP+ D T+
Sbjct: 590 GHFSKDVHLPHNYHIDFEIRMDTNRNQVLPLSDVD------------------TTSATDI 631
Query: 475 QRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPL---PFEELESQRGLPQLKS 531
QRV ++ R +C G A++ RHL MG+ ++ + ++LE + + LK+
Sbjct: 632 QRVAVLCVSRSAYCLGSSHPRGFLAMKMRHLNAMGFHVILVNNWEMDKLEMEDAVTFLKT 691
>gi|45267832 FAST kinase domains 2 [Homo sapiens]
Length = 710
Score = 35.0 bits (79), Expect = 0.18
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 34/180 (18%)
Query: 358 LSLLDTAVELELPGY-RGPRLPRRQQVPIFPQPLITDRARCKYSHKDIVAEGLRQLLGEE 416
L LDT ++L+ Y R L +P P+ L + K VAE L LLG E
Sbjct: 540 LHTLDTCLKLDDTVYLRDIAL----SLPQLPRELPSSHTNAK------VAEVLSSLLGGE 589
Query: 417 -KYRQDLTVPPGYCTDF-LLCASSSGAVLPVRTQDPFLPYPPRSCPQGQAASSATTRDPA 474
+ +D+ +P Y DF + ++ VLP+ D T+
Sbjct: 590 GHFSKDVHLPHNYHIDFEIRMDTNRNQVLPLSDVD------------------TTSATDI 631
Query: 475 QRVVLVLRERWHFCRDGRVLLGSRALRERHLGLMGYQLLPL---PFEELESQRGLPQLKS 531
QRV ++ R +C G A++ RHL MG+ ++ + ++LE + + LK+
Sbjct: 632 QRVAVLCVSRSAYCLGSSHPRGFLAMKMRHLNAMGFHVILVNNWEMDKLEMEDAVTFLKT 691
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 33.5 bits (75), Expect = 0.52
Identities = 42/140 (30%), Positives = 50/140 (35%), Gaps = 14/140 (10%)
Query: 4 PRGEPGPRAPRPTEGATCAG------PGESWSPSP-NSMLRVLLSAQTSPARLSGLLLIP 56
PRG GP PR +G G P E P P +L P + G+ P
Sbjct: 781 PRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQG-P 839
Query: 57 PVQPCCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSV 116
P Q LGP + P G GP QG Q G QNP+ R H S
Sbjct: 840 PPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPA--RGPHPSQ 897
Query: 117 A----LRRLGQLLGSRPRPP 132
++ LLG PR P
Sbjct: 898 GPIPFQQQKTPLLGDGPRAP 917
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 33.1 bits (74), Expect = 0.68
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 9 GPR----APRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQPCCLG 64
GPR +PR ++ A + P +W+P R L +P L GL +PP +
Sbjct: 308 GPRLCGKSPRGSQTARSSSPSRAWAPG----WRQLGRGPATP-MLHGLGPVPPPLWAAVS 362
Query: 65 PSKWGDRPVGGGPSAGP 81
S+WG GGGP P
Sbjct: 363 ASRWG----GGGPQPLP 375
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 33.1 bits (74), Expect = 0.68
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 9 GPR----APRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQPCCLG 64
GPR +PR ++ A + P +W+P R L +P L GL +PP +
Sbjct: 308 GPRLCGKSPRGSQTARSSSPSRAWAPG----WRQLGRGPATP-MLHGLGPVPPPLWAAVS 362
Query: 65 PSKWGDRPVGGGPSAGP 81
S+WG GGGP P
Sbjct: 363 ASRWG----GGGPQPLP 375
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 33.1 bits (74), Expect = 0.68
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 9 GPR----APRPTEGATCAGPGESWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQPCCLG 64
GPR +PR ++ A + P +W+P R L +P L GL +PP +
Sbjct: 308 GPRLCGKSPRGSQTARSSSPSRAWAPG----WRQLGRGPATP-MLHGLGPVPPPLWAAVS 362
Query: 65 PSKWGDRPVGGGPSAGP 81
S+WG GGGP P
Sbjct: 363 ASRWG----GGGPQPLP 375
>gi|151301204 unc-51-like kinase 4 [Homo sapiens]
Length = 1275
Score = 33.1 bits (74), Expect = 0.68
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 238 HVMVLLAQHLARHRLREPQLLEAIAHFLVVQETQLSSKVVQKLVLPFGRLNYLPLEQQFM 297
HV+ LLA H A + P + + +++E +SK+ Q L+ G L YL Q+
Sbjct: 532 HVIGLLASHTAELQENTPVVEAIVLLTELIRENFRNSKLKQCLLPTLGELIYLVATQE-- 589
Query: 298 PCLERILAREAGVAPLATVNILMSLCQLRCL 328
++ RE PLA +LM RCL
Sbjct: 590 --EKKKNPRECWAVPLAAYTVLM-----RCL 613
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 33.1 bits (74), Expect = 0.68
Identities = 56/230 (24%), Positives = 79/230 (34%), Gaps = 44/230 (19%)
Query: 4 PRGEPGPRAPRPTEGATCAGPGE---SWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP 60
P +PGP P P + + P + S PS SAQ S +S P+QP
Sbjct: 510 PPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQP 569
Query: 61 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR 120
+ PS P QGL + + + ELL + P K + +
Sbjct: 570 PTVSPS----------AKQPPSQGLPKTICPLCNTTELLLHV---PEKANFNTCTECQTT 616
Query: 121 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNC----------------PSFDIHTIHVCLHL 164
+ L G P P L ++ + + NC P + T V
Sbjct: 617 VCSLCGFNPNP------HLTEVKEWLCLNCQMKRALGGDLAPVPSSPQPKLKTAPVTTTS 670
Query: 165 AVLLGFP---SDGPLVCALEQERRLRLP-PKPPPPL--QPLLRGGQGLEA 208
AV P P A ++ + P PK PPPL QP L G +A
Sbjct: 671 AVSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPLVKQPTLHGSPSAKA 720
Score = 32.0 bits (71), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 4 PRGEPGPRAPRPTEGATCAGPGESWSPSPNS 34
P+G P P PRPT G T P +S P S
Sbjct: 872 PKGSPTPPGPRPTAGQTVPTPQQSPKPQEQS 902
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 33.1 bits (74), Expect = 0.68
Identities = 56/230 (24%), Positives = 79/230 (34%), Gaps = 44/230 (19%)
Query: 4 PRGEPGPRAPRPTEGATCAGPGE---SWSPSPNSMLRVLLSAQTSPARLSGLLLIPPVQP 60
P +PGP P P + + P + S PS SAQ S +S P+QP
Sbjct: 510 PPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQP 569
Query: 61 CCLGPSKWGDRPVGGGPSAGPVQGLQRLLEQAKSPGELLRWLGQNPSKVRAHHYSVALRR 120
+ PS P QGL + + + ELL + P K + +
Sbjct: 570 PTVSPS----------AKQPPSQGLPKTICPLCNTTELLLHV---PEKANFNTCTECQTT 616
Query: 121 LGQLLGSRPRPPPVEQVTLQDLSQLIIRNC----------------PSFDIHTIHVCLHL 164
+ L G P P L ++ + + NC P + T V
Sbjct: 617 VCSLCGFNPNP------HLTEVKEWLCLNCQMKRALGGDLAPVPSSPQPKLKTAPVTTTS 670
Query: 165 AVLLGFP---SDGPLVCALEQERRLRLP-PKPPPPL--QPLLRGGQGLEA 208
AV P P A ++ + P PK PPPL QP L G +A
Sbjct: 671 AVSKSSPQPQQTSPKKDAAPKQDLSKAPEPKKPPPLVKQPTLHGSPSAKA 720
Score = 32.0 bits (71), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 4 PRGEPGPRAPRPTEGATCAGPGESWSPSPNS 34
P+G P P PRPT G T P +S P S
Sbjct: 872 PKGSPTPPGPRPTAGQTVPTPQQSPKPQEQS 902
>gi|216547575 Fas apoptotic inhibitory molecule 3 isoform a [Homo
sapiens]
Length = 390
Score = 33.1 bits (74), Expect = 0.68
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 2 RRPRGEPGPRA--------PRPTEGATCAGPGESWSPSPNSML 36
+RPRG P PR+ PR GA AG GE+ P P + L
Sbjct: 300 QRPRGSPRPRSQNNIYSACPRRARGADAAGTGEAPVPGPGAPL 342
>gi|216547554 Fas apoptotic inhibitory molecule 3 isoform b [Homo
sapiens]
Length = 278
Score = 33.1 bits (74), Expect = 0.68
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 2 RRPRGEPGPRA--------PRPTEGATCAGPGESWSPSPNSML 36
+RPRG P PR+ PR GA AG GE+ P P + L
Sbjct: 188 QRPRGSPRPRSQNNIYSACPRRARGADAAGTGEAPVPGPGAPL 230
>gi|4885641 Fas apoptotic inhibitory molecule 3 isoform a [Homo
sapiens]
Length = 390
Score = 33.1 bits (74), Expect = 0.68
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 2 RRPRGEPGPRA--------PRPTEGATCAGPGESWSPSPNSML 36
+RPRG P PR+ PR GA AG GE+ P P + L
Sbjct: 300 QRPRGSPRPRSQNNIYSACPRRARGADAAGTGEAPVPGPGAPL 342
>gi|164519146 GATA zinc finger domain containing 2A [Homo sapiens]
Length = 633
Score = 32.7 bits (73), Expect = 0.88
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 69 GDRPVGGGPSAGPVQGLQRLLE---QAKSPGELLRWLGQNPSKVRAHHYSVALRRLGQLL 125
GD V P AGP QGL R E A GE L +G P +R H + R
Sbjct: 44 GDMRVTPEPGAGPTQGLLRATEATAMAMGRGEGL--VGDGPVDMRTSHSDMKSER----- 96
Query: 126 GSRPRPPPVEQVTLQDLSQ 144
RPP + + L D Q
Sbjct: 97 ----RPPSPDVIVLSDNEQ 111
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 32.3 bits (72), Expect = 1.2
Identities = 32/104 (30%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 4 PRGEPGPRAPRPTEGATCAGPGESWSPSPNSMLRVLLS----AQTSPARLSGLLL----- 54
P +P PR P A A PG SP P + R LL+ Q SP R+ +
Sbjct: 1881 PASQPLPRKRPPVTQAAGALPGPGASPVPKTPARTLLAKQHKTQRSPVRIPFMQRPARRG 1940
Query: 55 IPPVQPCCLGPSKWGDRPVGGGPSA-GPVQGLQRLLEQAKSPGE 97
PP+ P G GP A G GL R+ S E
Sbjct: 1941 PPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVRVASALSSGSE 1984
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,707,051
Number of Sequences: 37866
Number of extensions: 1509221
Number of successful extensions: 8159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 7937
Number of HSP's gapped (non-prelim): 281
length of query: 549
length of database: 18,247,518
effective HSP length: 107
effective length of query: 442
effective length of database: 14,195,856
effective search space: 6274568352
effective search space used: 6274568352
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.