Guide to the Human Genome
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Name: KIAA2022 Sequence: fasta or formatted (1516aa) NCBI GI: 56711286
Description:

hypothetical protein LOC340533

Referenced in:

DNA Polymerases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         77           3
 C cysteine            2.0         30           1
 D aspartate           6.3         96           3
 E glutamate           7.2        109           3
 F phenylalanine       3.6         55           2
 G glycine             6.3         96           2
 H histidine           1.6         24           2
 I isoleucine          4.3         65           3
 K lysine              9.3        141           4
 L leucine             7.8        118           3
 M methionine          2.7         41           2
 N asparagine          6.2         94           2
 P proline             5.7         86           2
 Q glutamine           4.8         73           2
 R arginine            3.2         49           2
 S serine             12.4        188           4
 T threonine           5.0         76           2
 V valine              3.7         56           2
 W tryptophan          0.8         12           1
 Y tyrosine            2.0         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC340533 
REV3L                 0.034   DNA polymerase zeta 
BOD1L                 0.008   biorientation of chromosomes in cell division 1-like...
DSPP                  0.006   dentin sialophosphoprotein preproprotein 
MED1                  0.006   mediator complex subunit 1 
FAM133B               0.005   hypothetical protein LOC257415 isoform 2 
FAM133B               0.005   hypothetical protein LOC257415 isoform 1 
RTF1                  0.004   Paf1/RNA polymerase II complex component 
ACAP2                 0.004   centaurin, beta 2 
LOC390561             0.004   PREDICTED: similar to hect domain and RLD 2 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.004   PREDICTED: hypothetical protein LOC643677 
CYLC1                 0.004   cylicin, basic protein of sperm head cytoskeleton 1...
CYLC2                 0.004   cylicin 2 
USP6                  0.004   ubiquitin specific protease 6 
ANKRD36               0.004   PREDICTED: ankyrin repeat domain 36 
KIF13A                0.004   kinesin family member 13A isoform a 
SASH1                 0.004   SAM and SH3 domain containing 1 
GTF2F1                0.004   general transcription factor IIF, polypeptide 1, 74...
CTR9                  0.004   SH2 domain binding protein 1 
LOC643446             0.004   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.004   PREDICTED: similar to ribonucleic acid binding prot...
PPIG                  0.004   peptidylprolyl isomerase G 
TRDN                  0.004   triadin 
RNPS1                 0.004   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.004   RNA-binding protein S1, serine-rich domain 
CASP8AP2              0.003   caspase 8 associated protein 2 
CASP8AP2              0.003   caspase 8 associated protein 2 
CASP8AP2              0.003   caspase 8 associated protein 2 
SIPA1L1               0.003   signal-induced proliferation-associated 1 like 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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