Guide to the Human Genome
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Name: TULP4 Sequence: fasta or formatted (678aa) NCBI GI: 55953102
Description:

tubby like protein 4 isoform 2

Referenced in:

Additional Genes in Development
WD Repeat Proteins

Other entries for this name:
alt prot [1543aa] tubby like protein 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         33           2
 C cysteine            2.2         15           1
 D aspartate           6.8         46           2
 E glutamate           5.0         34           2
 F phenylalanine       2.8         19           1
 G glycine             6.5         44           2
 H histidine           2.1         14           1
 I isoleucine          5.8         39           2
 K lysine              4.1         28           2
 L leucine             9.7         66           2
 M methionine          1.9         13           1
 N asparagine          3.7         25           2
 P proline             7.1         48           2
 Q glutamine           3.7         25           2
 R arginine            6.5         44           3
 S serine              9.4         64           2
 T threonine           5.2         35           1
 V valine              7.4         50           2
 W tryptophan          2.1         14           1
 Y tyrosine            3.2         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubby like protein 4 isoform 2 
TULP4                 0.988   tubby like protein 4 isoform 1 
WDR35                 0.087   WD repeat domain 35 isoform 2 
WDR35                 0.087   WD repeat domain 35 isoform 1 
WDR5                  0.018   WD repeat domain 5 
WDR5                  0.018   WD repeat domain 5 
WDR5B                 0.018   WD repeat domain 5B 
ARPC1A                0.012   actin related protein 2/3 complex subunit 1A 
ANKHD1-EIF4EBP3       0.011   ANKHD1-EIF4EBP3 protein 
TBL1Y                 0.011   transducin beta-like 1Y 
TBL1Y                 0.011   transducin beta-like 1Y 
TBL1Y                 0.011   transducin beta-like 1Y 
SEC13                 0.010   SEC13 protein isoform 2 
SEC13                 0.010   SEC13 protein isoform 1 
SMU1                  0.010   smu-1 suppressor of mec-8 and unc-52 homolog 
TBL1XR1               0.009   transducin (beta)-like 1 X-linked receptor 1 
TBL1X                 0.009   transducin beta-like 1X isoform b 
TBL1X                 0.009   transducin beta-like 1X isoform b 
TBL1X                 0.009   transducin beta-like 1X isoform a 
TBL1X                 0.009   transducin beta-like 1X isoform a 
CIAO1                 0.007   WD repeat domain 39 
NUP153                0.007   nucleoporin 153kDa 
TULP2                 0.007   tubby like protein 2 
STRN                  0.007   striatin, calmodulin binding protein 
WDR69                 0.007   WD repeat domain 69 
FZR1                  0.007   Fzr1 protein isoform 1 
FZR1                  0.007   Fzr1 protein isoform 3 
FZR1                  0.007   Fzr1 protein isoform 2 
WDFY2                 0.007   WD repeat and FYVE domain containing 2 
SPSB4                 0.006   splA/ryanodine receptor domain and SOCS box containi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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